Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTCGATAACTGTATACAGCTGAGCACCGCCGCCGCCATGTGCGCCACCACTTCCATCCCCAAATCTCACCCCTTCTCTTCAAATTTCCACCAAAAGACCACCTTATCCCTTCAACGCCTCAACAAATTCCCCACTTCCACTTCCCGATTCAGCCTCTTCTCATCTTCCACTCTCAGAAAACCCACCGCCGTCACCTGTAAAGCTCGCGGAGCCGTTGACGACGGTTAGTCACCGATCTATCTCCCTCCACCAAATTTTTATCGGTATAACGAATTTTACACCAACATCTTCGTTTTTCTGCCTTGTGGGGTTTGCAAATTTGACTCTGTTTTTTCACAAAAATTGCAGTGAAAGAGGTTACAGAGTCGAGCTGGAACGAGCTGGTGGTGGGCAGTCAGAAGACTGTGCTGGTGGAGTTCTGGGCGCCGTGGTGTGGACCGTGTAAGATGATCGAGCCAGTGATTAAGGATTTGGCGCAGGAATATGCAGGGAAAATTGTATGTTTGAAGTTGAATACGGACGTTAGCCCGAATGTGGCCTCGAAATATGGGATTAGAAGCATTCCCACGGTTCTGTTCTTCAAGAATGGGCAGAAGAGAGAGAGCATAATTGGGGCTGTGCCCAAATCGACCTTGTCCGCCACCATTGATAAGTATCTCGAGGTTTGA
mRNA sequence
ATGGCACTCGATAACTGTATACAGCTGAGCACCGCCGCCGCCATGTGCGCCACCACTTCCATCCCCAAATCTCACCCCTTCTCTTCAAATTTCCACCAAAAGACCACCTTATCCCTTCAACGCCTCAACAAATTCCCCACTTCCACTTCCCGATTCAGCCTCTTCTCATCTTCCACTCTCAGAAAACCCACCGCCGTCACCTGTAAAGCTCGCGGAGCCGTTGACGACGTGAAAGAGGTTACAGAGTCGAGCTGGAACGAGCTGGTGGTGGGCAGTCAGAAGACTGTGCTGGTGGAGTTCTGGGCGCCGTGGTGTGGACCGTGTAAGATGATCGAGCCAGTGATTAAGGATTTGGCGCAGGAATATGCAGGGAAAATTGTATGTTTGAAGTTGAATACGGACGTTAGCCCGAATGTGGCCTCGAAATATGGGATTAGAAGCATTCCCACGGTTCTGTTCTTCAAGAATGGGCAGAAGAGAGAGAGCATAATTGGGGCTGTGCCCAAATCGACCTTGTCCGCCACCATTGATAAGTATCTCGAGGTTTGA
Coding sequence (CDS)
ATGGCACTCGATAACTGTATACAGCTGAGCACCGCCGCCGCCATGTGCGCCACCACTTCCATCCCCAAATCTCACCCCTTCTCTTCAAATTTCCACCAAAAGACCACCTTATCCCTTCAACGCCTCAACAAATTCCCCACTTCCACTTCCCGATTCAGCCTCTTCTCATCTTCCACTCTCAGAAAACCCACCGCCGTCACCTGTAAAGCTCGCGGAGCCGTTGACGACGTGAAAGAGGTTACAGAGTCGAGCTGGAACGAGCTGGTGGTGGGCAGTCAGAAGACTGTGCTGGTGGAGTTCTGGGCGCCGTGGTGTGGACCGTGTAAGATGATCGAGCCAGTGATTAAGGATTTGGCGCAGGAATATGCAGGGAAAATTGTATGTTTGAAGTTGAATACGGACGTTAGCCCGAATGTGGCCTCGAAATATGGGATTAGAAGCATTCCCACGGTTCTGTTCTTCAAGAATGGGCAGAAGAGAGAGAGCATAATTGGGGCTGTGCCCAAATCGACCTTGTCCGCCACCATTGATAAGTATCTCGAGGTTTGA
Protein sequence
MALDNCIQLSTAAAMCATTSIPKSHPFSSNFHQKTTLSLQRLNKFPTSTSRFSLFSSSTLRKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIKDLAQEYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATIDKYLEV
Homology
BLAST of Lag0029137 vs. NCBI nr
Match:
KAG7032842.1 (hypothetical protein SDJN02_06892 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 315.8 bits (808), Expect = 2.4e-82
Identity = 160/186 (86.02%), Postives = 169/186 (90.86%), Query Frame = 0
Query: 1 MALDNCIQLSTAAAMCATTSIPKSHPFSSNFHQKTTLSLQRLNKFPTSTSRFSLFSSST- 60
MALDNCIQLSTAAAM TTSIPKSHPFSS FHQK TLSLQRLNKFPTST+RF FS+ST
Sbjct: 1 MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKPTLSLQRLNKFPTSTARFKSFSTSTS 60
Query: 61 ---LRKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIK 120
K +VTCKARGAVDDVKEVTESSWNELVV S+KTVLVEFWAPWCGPCKMIEPVI+
Sbjct: 61 VSSFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIR 120
Query: 121 DLAQEYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATI 180
+LAQ+YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNGQKRE +IGAVPKSTLSA+I
Sbjct: 121 ELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASI 180
Query: 181 DKYLEV 183
DKYLEV
Sbjct: 181 DKYLEV 186
BLAST of Lag0029137 vs. NCBI nr
Match:
XP_022989806.1 (uncharacterized protein LOC111486882 [Cucurbita maxima])
HSP 1 Score: 315.1 bits (806), Expect = 4.0e-82
Identity = 160/186 (86.02%), Postives = 168/186 (90.32%), Query Frame = 0
Query: 1 MALDNCIQLSTAAAMCATTSIPKSHPFSSNFHQKTTLSLQRLNKFPTSTSRFSLFSS--- 60
MALDNCIQLSTAAAM TTSIPKSHPFSS FHQKTTLSLQRLNKFPTS +RF FS
Sbjct: 1 MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKTTLSLQRLNKFPTSIARFKSFSPSTS 60
Query: 61 -STLRKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIK 120
ST K +VTCKARGAVDDVKEVTESSWNELVV S+KTVLVEFWAPWCGPCKMIEPVI+
Sbjct: 61 VSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIR 120
Query: 121 DLAQEYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATI 180
+LAQ+YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNGQKRE +IGAVPKSTLSA+I
Sbjct: 121 ELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASI 180
Query: 181 DKYLEV 183
DKYLEV
Sbjct: 181 DKYLEV 186
BLAST of Lag0029137 vs. NCBI nr
Match:
XP_022955939.1 (uncharacterized protein LOC111457772 [Cucurbita moschata])
HSP 1 Score: 315.1 bits (806), Expect = 4.0e-82
Identity = 160/186 (86.02%), Postives = 168/186 (90.32%), Query Frame = 0
Query: 1 MALDNCIQLSTAAAMCATTSIPKSHPFSSNFHQKTTLSLQRLNKFPTSTSRFSLFSS--- 60
MALDNCIQLSTAAAM TTSIPKSHPFSS FHQK TLSLQRLNKFPTST+RF FS
Sbjct: 1 MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKPTLSLQRLNKFPTSTARFKSFSPSTS 60
Query: 61 -STLRKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIK 120
ST K +VTCKARGAVDDVKEVTESSWNELVV S+KTVLVEFWAPWCGPCKMIEPVI+
Sbjct: 61 VSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIR 120
Query: 121 DLAQEYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATI 180
+LAQ+YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNGQKRE +IGAVPKSTLSA+I
Sbjct: 121 ELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASI 180
Query: 181 DKYLEV 183
DKYLEV
Sbjct: 181 DKYLEV 186
BLAST of Lag0029137 vs. NCBI nr
Match:
KAG6602152.1 (hypothetical protein SDJN03_07385, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 313.9 bits (803), Expect = 8.9e-82
Identity = 159/186 (85.48%), Postives = 168/186 (90.32%), Query Frame = 0
Query: 1 MALDNCIQLSTAAAMCATTSIPKSHPFSSNFHQKTTLSLQRLNKFPTSTSRFSLFSSST- 60
MALDNCIQLSTAAAM TTSIPKSHPFSS FHQK TLSLQRLNKFPT+T+RF FS ST
Sbjct: 1 MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKPTLSLQRLNKFPTTTARFKSFSPSTS 60
Query: 61 ---LRKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIK 120
K +VTCKARGAVDDVKEVTESSWNELVV S+KTVLVEFWAPWCGPCKMIEPVI+
Sbjct: 61 VSSFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIR 120
Query: 121 DLAQEYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATI 180
+LAQ+YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNGQKRE +IGAVPKSTLSA+I
Sbjct: 121 ELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASI 180
Query: 181 DKYLEV 183
DKYLEV
Sbjct: 181 DKYLEV 186
BLAST of Lag0029137 vs. NCBI nr
Match:
XP_023524932.1 (uncharacterized protein LOC111788711 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 159/186 (85.48%), Postives = 167/186 (89.78%), Query Frame = 0
Query: 1 MALDNCIQLSTAAAMCATTSIPKSHPFSSNFHQKTTLSLQRLNKFPTSTSRFSLFSS--- 60
MALDNCIQLSTAAAM TTSIPKSHPFSS FHQK TLSLQR NKFPTST+RF FS
Sbjct: 1 MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKPTLSLQRFNKFPTSTARFKSFSPSTS 60
Query: 61 -STLRKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIK 120
ST K +VTCKARGAVDDVKEVTESSWNELVV S+KTVLVEFWAPWCGPCKMIEPVI+
Sbjct: 61 VSTFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIR 120
Query: 121 DLAQEYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATI 180
+LAQ+YAGKIVCLKLNTD SPNVASKYGIRSIPTVLFFKNGQKRE +IGAVPKSTLSA+I
Sbjct: 121 ELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASI 180
Query: 181 DKYLEV 183
DKYLEV
Sbjct: 181 DKYLEV 186
BLAST of Lag0029137 vs. ExPASy Swiss-Prot
Match:
P07591 (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=2)
HSP 1 Score: 179.9 bits (455), Expect = 2.6e-44
Identity = 98/184 (53.26%), Postives = 131/184 (71.20%), Query Frame = 0
Query: 1 MALDNCIQLSTAAAMCATTSIPKSHPF----SSNFHQKTTLSLQRLNKFPTSTSRFSLFS 60
MA++NC+QLST+A++ T KSH SS + T L+R FP +S S S
Sbjct: 1 MAIENCLQLSTSASV--GTVAVKSHVHHLQPSSKVNVPTFRGLKR--SFPALSSSVSSSS 60
Query: 61 SSTLRKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIK 120
R ++V CKA AV +V++V +SSW E V+ S+ V+V+FWAPWCGPCK+I PVI
Sbjct: 61 PRQFRY-SSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVID 120
Query: 121 DLAQEYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATI 180
+LA+EY+GKI KLNTD +P +A++Y IRSIPTVLFFKNG+++ESIIGAVPKSTL+ +I
Sbjct: 121 ELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSI 179
BLAST of Lag0029137 vs. ExPASy Swiss-Prot
Match:
P48384 (Thioredoxin M-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 5.0e-43
Identity = 87/164 (53.05%), Postives = 116/164 (70.73%), Query Frame = 0
Query: 30 NFHQKTTLS-------------LQRLNKFPTSTSRFSLFSSSTLRKPTAVTCKARGAVDD 89
+ H KT+LS L ++ S + + F+S L V AR AV++
Sbjct: 9 SIHTKTSLSSSIVFIFKGKACLLTSKSRIQESFAELNSFTSLVLLIENHVLLHAREAVNE 68
Query: 90 VKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIKDLAQEYAGKIVCLKLNTDVS 149
V+ V +SSW+ELV+GS+ VLV+FWAPWCGPC+MI P+I +LA+EYAGKI C KLNTD S
Sbjct: 69 VQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDES 128
Query: 150 PNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATIDKYL 181
PN A+KYGIRSIPTVLFFKNG++++S+IGAVPK+TLS ++KY+
Sbjct: 129 PNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172
BLAST of Lag0029137 vs. ExPASy Swiss-Prot
Match:
Q9ZP20 (Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TRXM PE=2 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 5.5e-42
Identity = 79/133 (59.40%), Postives = 100/133 (75.19%), Query Frame = 0
Query: 48 STSRFSLFSSSTLRKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGP 107
S R S+ S S LR + C+ VD+V E +W+ +V+GS+ VLVEFWAPWCGP
Sbjct: 38 SKPRLSVASPSPLRPASRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGP 97
Query: 108 CKMIEPVIKDLAQEYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAV 167
C+MI PVI +LA+EY GKI C K+NTD SPN+A+ YGIRSIPTVL FKNG+K+ES+IGAV
Sbjct: 98 CRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAV 157
Query: 168 PKSTLSATIDKYL 181
PK+TL+ IDKY+
Sbjct: 158 PKTTLATIIDKYV 170
BLAST of Lag0029137 vs. ExPASy Swiss-Prot
Match:
Q41864 (Thioredoxin M-type, chloroplastic OS=Zea mays OX=4577 GN=TRM1 PE=2 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 1.8e-40
Identity = 77/120 (64.17%), Postives = 96/120 (80.00%), Query Frame = 0
Query: 61 RKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIKDLAQ 120
R+P V C+++ AVD+V E +W+ LV+ + VLVEFWAPWCGPC+MI PVI +LA+
Sbjct: 46 RRPRHV-CQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAK 105
Query: 121 EYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATIDKYL 180
+YAGKI C K+NTD SPNVAS YGIRSIPTVL FK G+K+ES+IGAVPKSTL+ IDKY+
Sbjct: 106 DYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164
BLAST of Lag0029137 vs. ExPASy Swiss-Prot
Match:
Q9ZP21 (Thioredoxin M-type, chloroplastic OS=Triticum aestivum OX=4565 PE=2 SV=1)
HSP 1 Score: 164.9 bits (416), Expect = 8.8e-40
Identity = 71/120 (59.17%), Postives = 92/120 (76.67%), Query Frame = 0
Query: 61 RKPTAVTCKARGAVDDVKEVTESSWNELVVGSQKTVLVEFWAPWCGPCKMIEPVIKDLAQ 120
R+P+ CK + VD+V E +W+ +V+ + VLVEFWAPWCGPC+MI PVI +LA+
Sbjct: 54 RRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAK 113
Query: 121 EYAGKIVCLKLNTDVSPNVASKYGIRSIPTVLFFKNGQKRESIIGAVPKSTLSATIDKYL 180
+Y GKI C K+NTD PN+AS YGIRSIPTVL FK+G+K+ES+IGAVPK+TL IDKY+
Sbjct: 114 DYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7032842.1 | 2.4e-82 | 86.02 | hypothetical protein SDJN02_06892 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_022989806.1 | 4.0e-82 | 86.02 | uncharacterized protein LOC111486882 [Cucurbita maxima] | [more] |
XP_022955939.1 | 4.0e-82 | 86.02 | uncharacterized protein LOC111457772 [Cucurbita moschata] | [more] |
KAG6602152.1 | 8.9e-82 | 85.48 | hypothetical protein SDJN03_07385, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023524932.1 | 1.2e-81 | 85.48 | uncharacterized protein LOC111788711 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
P07591 | 2.6e-44 | 53.26 | Thioredoxin M-type, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=2 | [more] |
P48384 | 5.0e-43 | 53.05 | Thioredoxin M-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1 | [more] |
Q9ZP20 | 5.5e-42 | 59.40 | Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TRXM P... | [more] |
Q41864 | 1.8e-40 | 64.17 | Thioredoxin M-type, chloroplastic OS=Zea mays OX=4577 GN=TRM1 PE=2 SV=1 | [more] |
Q9ZP21 | 8.8e-40 | 59.17 | Thioredoxin M-type, chloroplastic OS=Triticum aestivum OX=4565 PE=2 SV=1 | [more] |