Lag0029094 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029094
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr8: 35283253 .. 35284995 (-)
RNA-Seq Expression	Lag0029094
Synteny	Lag0029094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTCCTATGGCCTCTCTTCTGTATGCTTCTTTGCTTCTATTGTTTGTCTCTCTAATTTTGCCCTCAACAGCCACTGCGAATCCTGTTTATGAATATCCGCCGCAGCCGCCACCGCGAACGGCGGTTCAAGAGCCAGCCTTCAACAAACGATACAAACTTCTTTCGATTCATTCCACAATATCAACCATGAGTAAACATAAGCAAGCACAATTACAAGGTCAGCTCCAGTCACCTGACGGTTATCAGTGGCCACCTAAACACGAACTTGACGCGTCACCTCCTCCTTTTTGATAAGTTGAATGGTGGGAATACGATCAAAATCTTATACTTTATTAGATAAAGAGAAGAAGGAGTCGTAGTATATAAATAAAAATAACTATTTCTGTTAGTACAAGATCTTATAAGTGAAATTAAGGACAATATCACATCATAACTTCTTAGATGTAGAACTTGGTTTGTAATTTTTATTACTCAGCTGGATTGGTATGTTATGGATGTAAATGTACTAATGTAGGGTATCGTGAGTAACCACAAACTCTTGTGTTGTGGCCTTTTTCAAAAAAAAACTCCGATTTGTATGTTGTGATTTCTTAATCTTATTCTTAATAGATTAAAGGCAATCATGTTAATTAGGAGACGAGAATACTCTACAAATCTTCATAATGGTATGATATTGTCTACTTTGGACATAAGCTCTCATGGTTTATACTTGTCATCCTTTATATACCGACAATCATCCCCTTATATCTAACTAATGTGTGGGACTTTGATGGCTATATAACTCTTTTGGAAAAAATATATATAAATGTTTCGTTGTATCTGTAATCTTTGAAGCCATTTCATTCAAACTTGCTTTCAAAATTTATGTCAAACTCAACCTAAAACAGGAGGAAAAGAAACAAAAGGAAATATTTTCATTATTTTTTTTTACTTAATGGCTGACATATCACATATCCTCCACGAGTGTAGTTTTCAAAGCAAGAATAATATTGGAATCTCGCAATATATAATGCCATATACATTATTGTCTAAAAAATCTCTCTAAATTTTTATTTACTCTAACATGTATATCTCTCTAATTTAAAAAAAAAATAGTTATCATATGATTTTTTTTTTTTGGTTAAATTACATGTTTAGTCTCTGTCTCTGAAATTTAAGGTTTGTGTCTATTTGCTCCCTAAATTTTAAGAAATGTCTAATATAGGTCTTTGAACTTTTAATTTTCCATGTCTAATAGGTCTATGAACTTTTAATTTTGTATCTGAATAGTTTCCTGAACTTTAAAATGTGTTTGATAAGTTTTTAAACTTTCAATTTCAGTCCTTTAACACGGCGGACAGATTACAAGCGGTCTTCAAGAACTGTGCCTTCAACCCGAGCTGCTGCATTTTGTGTCATAGCCACTCGGAGACCTTAGACCACCTCTTAATTCACTGCCCCCTTGCTTCAAGCTTTTGGCAATCTCTTCATGCTGCCATGGGGGTTCACTTCCTGCCTCAGGCTATGGCTCATCATTTCTGCAAGGAGGCCTTTTTCTTGAAGGGCAATTCCCATCGAAGTATTATTATTCAGACGTTATCTGCAGCTATTTTGTGGTCACTTTGGTCGGAGCGAAACTCTCGGATTTTTAACAATATATCTCGCTCAGCCTCTCAAATTTGGGAAGATATCATTGCTAGCGCTTCGTTTTCGGTTCTTCTTCTTCCAAGCTTTTTGCTAGCTAAAATGCATCCTTAA

mRNA sequence

ATGTCTTCTCCTATGGCCTCTCTTCTGTATGCTTCTTTGCTTCTATTGTTTGTCTCTCTAATTTTGCCCTCAACAGCCACTGCGAATCCTGTTTATGAATATCCGCCGCAGCCGCCACCGCGAACGGCGGTTCAAGAGCCAGCCTTCAACAAACGATACAAACTTCTTTCGATTCATTCCACAATATCAACCATGAGTAAACATAAGCAAGCACAATTACAAGGTCAGCTCCAGTCACCTGACGCTGGATTGTCCTTTAACACGGCGGACAGATTACAAGCGGTCTTCAAGAACTGTGCCTTCAACCCGAGCTGCTGCATTTTGTGTCATAGCCACTCGGAGACCTTAGACCACCTCTTAATTCACTGCCCCCTTGCTTCAAGCTTTTGGCAATCTCTTCATGCTGCCATGGGGGTTCACTTCCTGCCTCAGGCTATGGCTCATCATTTCTGCAAGGAGGCCTTTTTCTTGAAGGGCAATTCCCATCGAAGTATTATTATTCAGACGTTATCTGCAGCTATTTTGTGGTCACTTTGGTCGGAGCGAAACTCTCGGATTTTTAACAATATATCTCGCTCAGCCTCTCAAATTTGGGAAGATATCATTGCTAGCGCTTCGTTTTCGGTTCTTCTTCTTCCAAGCTTTTTGCTAGCTAAAATGCATCCTTAA

Coding sequence (CDS)

ATGTCTTCTCCTATGGCCTCTCTTCTGTATGCTTCTTTGCTTCTATTGTTTGTCTCTCTAATTTTGCCCTCAACAGCCACTGCGAATCCTGTTTATGAATATCCGCCGCAGCCGCCACCGCGAACGGCGGTTCAAGAGCCAGCCTTCAACAAACGATACAAACTTCTTTCGATTCATTCCACAATATCAACCATGAGTAAACATAAGCAAGCACAATTACAAGGTCAGCTCCAGTCACCTGACGCTGGATTGTCCTTTAACACGGCGGACAGATTACAAGCGGTCTTCAAGAACTGTGCCTTCAACCCGAGCTGCTGCATTTTGTGTCATAGCCACTCGGAGACCTTAGACCACCTCTTAATTCACTGCCCCCTTGCTTCAAGCTTTTGGCAATCTCTTCATGCTGCCATGGGGGTTCACTTCCTGCCTCAGGCTATGGCTCATCATTTCTGCAAGGAGGCCTTTTTCTTGAAGGGCAATTCCCATCGAAGTATTATTATTCAGACGTTATCTGCAGCTATTTTGTGGTCACTTTGGTCGGAGCGAAACTCTCGGATTTTTAACAATATATCTCGCTCAGCCTCTCAAATTTGGGAAGATATCATTGCTAGCGCTTCGTTTTCGGTTCTTCTTCTTCCAAGCTTTTTGCTAGCTAAAATGCATCCTTAA

Protein sequence

MSSPMASLLYASLLLLFVSLILPSTATANPVYEYPPQPPPRTAVQEPAFNKRYKLLSIHSTISTMSKHKQAQLQGQLQSPDAGLSFNTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLPQAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDIIASASFSVLLLPSFLLAKMHP

Homology

[Close]

BLAST of Lag0029094 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-13
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 87  NTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLP--- 146
           NTADRLQ    N A +P+ C +C+   E ++HL IHCP +   W    A +  +  P   
Sbjct: 344 NTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDV 403

Query: 147 QAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDIIA 204
           Q++  + C     L   + + +I    SA +LW +W ERN+RIF    + +  +WEDI+A
Sbjct: 404 QSLVQNICS----LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILA 459

[Close]

BLAST of Lag0029094 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-13
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 87  NTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLP--- 146
           NTADRLQ    N A +P+ C +C+   E ++HL IHCP +   W    A +  +  P   
Sbjct: 301 NTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDV 360

Query: 147 QAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDIIA 204
           Q++  + C     L   + + +I    SA +LW +W ERN+RIF    + +  +WEDI+A
Sbjct: 361 QSLVQNICS----LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILA 416

[Close]

BLAST of Lag0029094 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-12
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 87   NTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLP--- 146
            NTADRLQ    N   +P+ C +C+   E ++HL IHCP +   W    A +  +  P   
Sbjct: 1001 NTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPTDV 1060

Query: 147  QAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDIIA 204
            Q++  + C     L   + + +I    +A ILW +W ERN+RIF    ++   +WED +A
Sbjct: 1061 QSLIQNICS----LNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLA 1116

[Close]

BLAST of Lag0029094 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-12
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 85   SFNTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSL--HAAMGVHFL 144
            S NTA++L     N    PS C++C  + E   HL I CP+A S W+S+  H +  V+ L
Sbjct: 912  SVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCL 971

Query: 145  -PQAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDI 204
             P+ +    C      K  + +++I+    A+ LW++W ERN+RIFN   ++ ++IWEDI
Sbjct: 972  SPKELCITMCS----WKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDI 1031

Query: 205  IASA 206
             A A
Sbjct: 1032 KALA 1031

[Close]

BLAST of Lag0029094 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-12
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 85   SFNTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSL--HAAMGVHFL 144
            S NTA++L     N    PS C++C  + E   HL I CP+A S W+S+  H +  V+ L
Sbjct: 912  SVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCL 971

Query: 145  -PQAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDI 204
             P+ +    C      K  + +++I+    A+ LW++W ERN+RIFN   ++ ++IWEDI
Sbjct: 972  SPKELCITMCS----WKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDI 1031

Query: 205  IASA 206
             A A
Sbjct: 1032 KALA 1031

[Close]

BLAST of Lag0029094 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 87  NTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLP--- 146
           NTADRLQ    N A +P+ C +C+   E ++HL IHCP +   W    A +  +  P   
Sbjct: 344 NTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDV 403

Query: 147 QAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDIIA 204
           Q++  + C     L   + + +I    SA +LW +W ERN+RIF    + +  +WEDI+A
Sbjct: 404 QSLVQNICS----LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILA 459

[Close]

BLAST of Lag0029094 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 87  NTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLP--- 146
           NTADRLQ    N A +P+ C +C+   E ++HL IHCP +   W    A +  +  P   
Sbjct: 301 NTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDV 360

Query: 147 QAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDIIA 204
           Q++  + C     L   + + +I    SA +LW +W ERN+RIF    + +  +WEDI+A
Sbjct: 361 QSLVQNICS----LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILA 416

[Close]

BLAST of Lag0029094 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.9e-13
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 87   NTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLP--- 146
            NTADRLQ    N   +P+ C +C+   E ++HL IHCP +   W    A +  +  P   
Sbjct: 1001 NTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPTDV 1060

Query: 147  QAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDIIA 204
            Q++  + C     L   + + +I    +A ILW +W ERN+RIF    ++   +WED +A
Sbjct: 1061 QSLIQNICS----LNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLA 1116

[Close]

BLAST of Lag0029094 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 85   SFNTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSL--HAAMGVHFL 144
            S NTA++L     N    PS C++C  + E   HL I CP+A S W+S+  H +  V+ L
Sbjct: 912  SVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCL 971

Query: 145  -PQAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDI 204
             P+ +    C      K  + +++I+    A+ LW++W ERN+RIFN   ++ ++IWEDI
Sbjct: 972  SPKELCITMCS----WKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDI 1031

Query: 205  IASA 206
             A A
Sbjct: 1032 KALA 1031

[Close]

BLAST of Lag0029094 vs. ExPASy TrEMBL
Match: A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 85   SFNTADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSL--HAAMGVHFL 144
            S NTA++L     N    PS C++C  + E   HL I CP+A S W+S+  H +  V+ L
Sbjct: 912  SVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCL 971

Query: 145  -PQAMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDI 204
             P+ +    C      K  + +++I+    A+ LW++W ERN+RIFN   ++ ++IWEDI
Sbjct: 972  SPKELCITMCS----WKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDI 1031

Query: 205  IASA 206
             A A
Sbjct: 1032 KALA 1031

[Close]

BLAST of Lag0029094 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.7e-06
Identity = 31/116 (26.72%), Postives = 56/116 (48.28%), Query Frame = 0


Query: 87  NTADRLQAVFKNCAFN-PSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLPQA 146
           +T DRLQ    N   + P+ C+LC++H ++  HL   C  +   W+   A+  ++  P A
Sbjct: 155 HTRDRLQ----NWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLN--PPA 214

Query: 147 MAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDI 202
                           +  +II+    + ++++W ERN R+ + +SRS   I +DI
Sbjct: 215 QLMDCLNWLLSPSREKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDI 264

[Close]

BLAST of Lag0029094 vs. TAIR 10
Match: AT5G18880.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-05
Identity = 40/130 (30.77%), Postives = 59/130 (45.38%), Query Frame = 0


Query: 88  TADRLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQ---SLHAAMGVHFLPQ 147
           T DRL+    N    PS  +LC +  ET  HL   C  + + W+   S         LP 
Sbjct: 154 TRDRLRGWGMNI---PSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSPPFGLPA 213

Query: 148 AMAHHFCKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDIIAS 207
           A +         L   SH + I++ L  + ++ +W ERN+RIF +IS SAS +   I  +
Sbjct: 214 ASSW-----ILQLPLRSHSTTILKLLLQSAVYHVWKERNARIFTSISSSASSLRLAIDRT 273

Query: 208 ASFSVLLLPS 215
               +L  PS
Sbjct: 274 MRNRLLSFPS 275

[Close]

BLAST of Lag0029094 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.2e-05
Identity = 24/95 (25.26%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 103 PSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLPQAMAHHFCKEAFFLKGNSH 162
           P  C+ C++H ET  HL   C  A   W  ++    VH  P  +     +       + +
Sbjct: 82  PPLCLFCNTHDETRQHLFFDCEFAREVW--IYFTSRVHVFPPLLFEDGIRWLKNPCQDKN 141

Query: 163 RSIIIQTLSAAILWSLWSERNSRIFNNISRSASQI 198
            + I++    A ++++W ERN+R+ ++ SR A+ +
Sbjct: 142 VTTILRLSHHASVYTIWKERNARLHDSASRPAAAL 174

[Close]

BLAST of Lag0029094 vs. TAIR 10
Match: AT4G05095.1 (BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 2.0e-04
Identity = 26/99 (26.26%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 103 PSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLPQAMAHHFCKEAFFLKGNSH 162
           PS C+LC  ++E  +HL   C ++ + W +          P  +             + +
Sbjct: 9   PSDCVLCSGNAEFREHLFFGCGVSFAVWGNF--MFRASLTPPLLFMDCLTWVLSPSRDPN 68

Query: 163 RSIIIQTLSAAILWSLWSERNSRIFNNISRSASQIWEDI 202
            S+II+ +  A ++ LW ERN R+ ++ SRS++ I ++I
Sbjct: 69  ISLIIKLVFQASIYFLWKERNRRLHDHASRSSTAIIKEI 105

[Close]

BLAST of Lag0029094 vs. TAIR 10
Match: AT4G10613.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 42.0 bits (97), Expect = 7.5e-04
Identity = 28/98 (28.57%), Postives = 46/98 (46.94%), Query Frame = 0


Query: 91  RLQAVFKNCAFNPSCCILCHSHSETLDHLLIHCPLASSFWQSLHAAMGVHFLPQAMAHHF 150
           R + V      +P CC LC    ET DHL++ C  +SS W  + A + +  + Q      
Sbjct: 12  RARLVSWGLQISPLCC-LCSQSVETRDHLILTCGFSSSIWNMVQARLRLQPV-QFRVWES 71

Query: 151 CKEAFFLKGNSHRSIIIQTLSAAILWSLWSERNSRIFN 189
                 L   S  SII + ++ A + ++W +RN+ + N
Sbjct: 72  LLSWIKLSTASSPSIIRKLVAQATVCAIWKQRNNLLHN 107

The following BLAST results are available for this feature:

BLAST of Lag0029094 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044451.1	2.2e-13	35.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	2.2e-13	35.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	1.8e-12	33.33	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
XP_016902461.1	2.4e-12	36.29	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]
KAA0039770.1	2.4e-12	36.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247...	[more]

BLAST of Lag0029094 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0029094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSA7	1.0e-13	35.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	1.0e-13	35.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	8.9e-13	33.33	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DM72	1.2e-12	36.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S4E2K5	1.2e-12	36.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079...	[more]

BLAST of Lag0029094 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04650.1	4.7e-06	26.72	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT5G18880.1	1.8e-05	30.77	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT2G02520.1	5.2e-05	25.26	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G05095.1	2.0e-04	26.26	BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse...	[more]
AT4G10613.1	7.5e-04	28.57	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029094.1	Lag0029094.1	mRNA