Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAGCCAGCGAAAAGGGCGGAGGATCAACATCCGGATTCTGATCTCCTCAAATTTTTTGTCGATGCAGCCTGGTTATCCATCCCTCCAGAAACAGGAATTGGAGTCATCTGCATGAACCACCATGGTAATGTAGTTGGCGCTAGTGCTTCCTTCATAGAAATGGATTTTGAAGCCCCCCTTGCTGAGTTGAAGGCCATAAAAGAAGGGATGAAGCTTGCTTTAAATTTTGACTGCCCTAAAATCGAAATTTATTCTGACTGTCTACAAGCAATTAAATTCGTGTCAAAAGCCACAGAGCCTTGGTGTAATGTGGAGGTGCAAGTGGAGGATATTTGGAATTTGTCTAATCTGTTTGCAGAATGTAGTTTTAAGTATATCCCAAGAGAGCTGAATTCCCTAGCTGATAGCTTAGCTAAGAAGGCTAAACGATCGGGTATTAATGATGTATGGGTTGGTTCAATCCCAGAGTGGATTGTTTCGTTGGTCGAGTATGACCGTTCTATCTCTGCCCACGTGGCGTAA mRNA sequence
ATGTTTGAGCCAGCGAAAAGGGCGGAGGATCAACATCCGGATTCTGATCTCCTCAAATTTTTTGTCGATGCAGCCTGGTTATCCATCCCTCCAGAAACAGGAATTGGAGTCATCTGCATGAACCACCATGGTAATGTAGTTGGCGCTAGTGCTTCCTTCATAGAAATGGATTTTGAAGCCCCCCTTGCTGAGTTGAAGGCCATAAAAGAAGGGATGAAGCTTGCTTTAAATTTTGACTGCCCTAAAATCGAAATTTATTCTGACTGTCTACAAGCAATTAAATTCGTGTCAAAAGCCACAGAGCCTTGGTGTAATGTGGAGGTGCAAGTGGAGGATATTTGGAATTTGTCTAATCTGTTTGCAGAATGTAGTTTTAAGTATATCCCAAGAGAGCTGAATTCCCTAGCTGATAGCTTAGCTAAGAAGGCTAAACGATCGGGTATTAATGATGTATGGGTTGGTTCAATCCCAGAGTGGATTGTTTCGTTGGTCGAGTATGACCGTTCTATCTCTGCCCACGTGGCGTAA Coding sequence (CDS)
ATGTTTGAGCCAGCGAAAAGGGCGGAGGATCAACATCCGGATTCTGATCTCCTCAAATTTTTTGTCGATGCAGCCTGGTTATCCATCCCTCCAGAAACAGGAATTGGAGTCATCTGCATGAACCACCATGGTAATGTAGTTGGCGCTAGTGCTTCCTTCATAGAAATGGATTTTGAAGCCCCCCTTGCTGAGTTGAAGGCCATAAAAGAAGGGATGAAGCTTGCTTTAAATTTTGACTGCCCTAAAATCGAAATTTATTCTGACTGTCTACAAGCAATTAAATTCGTGTCAAAAGCCACAGAGCCTTGGTGTAATGTGGAGGTGCAAGTGGAGGATATTTGGAATTTGTCTAATCTGTTTGCAGAATGTAGTTTTAAGTATATCCCAAGAGAGCTGAATTCCCTAGCTGATAGCTTAGCTAAGAAGGCTAAACGATCGGGTATTAATGATGTATGGGTTGGTTCAATCCCAGAGTGGATTGTTTCGTTGGTCGAGTATGACCGTTCTATCTCTGCCCACGTGGCGTAA Protein sequence
MFEPAKRAEDQHPDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVEDIWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYDRSISAHVA
Homology
BLAST of Lag0029089 vs. NCBI nr
Match:
XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])
HSP 1 Score: 101.3 bits (251), Expect = 8.8e-18
Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = 0
Query: 13 PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGM 72 P + +K VDAAW P +G I ++ G++ S I+ + PLAE + +G+ Sbjct: 59 PPTSFIKLNVDAAWKFSPYSSGFSAIIRDNQGSLKVVQISSIDAVYPPPLAEAFVVLQGL 118 Query: 73 KLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVEDIWNLSNLFAECSFKYIPREL 132 +L + KI + SDC AI K +V V +E+IW +S +F +F YIPR + Sbjct: 119 RLTSKMNFKKIIVKSDCSGAIDLFLKILISDSSVRVWLEEIWEISIVFYPINFAYIPRNI 178 Query: 133 NSLADSLAKKAKRSGINDVWVGS 156 N LAD +AK+ + GINDVW+ S Sbjct: 179 NKLADIVAKRTRILGINDVWMDS 201
BLAST of Lag0029089 vs. NCBI nr
Match:
XP_027093792.1 (uncharacterized protein LOC113714198 [Coffea arabica])
HSP 1 Score: 91.3 bits (225), Expect = 9.1e-15
Identity = 49/155 (31.61%), Postives = 74/155 (47.74%), Query Frame = 0
Query: 13 PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGM 72 P +++ DAA +I TG+G+I N HG +V A EA E AI+ + Sbjct: 88 PKEGIMRINTDAAISAIMVRTGLGIIARNWHGQIVKAQGIIGRRRSEAATEESLAIRSAL 147 Query: 73 KLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVEDIWNLSNLFAECSFKYIPREL 132 ++ KIE+ SDC + ++ C ++ +EDI L N F C F ++PR + Sbjct: 148 EMTQLAGWTKIEVQSDCKNIVSSINPDNVQDCKIQTILEDIEALKNSFDSCLFSFVPRTV 207 Query: 133 NSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD 168 N + +LA+ A RS N W S P W+ L D Sbjct: 208 NICSHALAQFAVRSVQNFEWKDSFPIWLSQLASKD 242
BLAST of Lag0029089 vs. NCBI nr
Match:
XP_027119939.1 (uncharacterized protein LOC113736922 [Coffea arabica])
HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 50/161 (31.06%), Postives = 81/161 (50.31%), Query Frame = 0
Query: 13 PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGM 72 PD+ ++K DAA + G+G+I + HGN+V A + A + AI++G+ Sbjct: 89 PDAGVVKINTDAAIPTKLAGAGLGMIAKDDHGNLVEARGTRKYSRGGAEMEMADAIRQGL 148 Query: 73 KLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVEDIWNLSNLFAECSFKYIPREL 132 +A +IE+ DC AI+ + K E ++ +EDI LS +F CSF ++ R+ Sbjct: 149 LMAKEVGWQRIEMQFDCKAAIEQIHKKGEEETPIDTIMEDIKQLSGMFQYCSFSFVYRDG 208 Query: 133 NSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYDRSISAH 174 N A LA+ A + N VW S P W+ ++ D + H Sbjct: 209 NRCAYQLAQFATKLVSNIVWKQSFPLWLKESIQEDNRTNVH 249
BLAST of Lag0029089 vs. NCBI nr
Match:
XP_027061983.1 (uncharacterized protein LOC113688376 [Coffea arabica])
HSP 1 Score: 85.5 bits (210), Expect = 5.0e-13
Identity = 46/155 (29.68%), Postives = 73/155 (47.10%), Query Frame = 0
Query: 13 PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGM 72 P ++K DAA + TG+G+I N HG +V A EA E AI+ + Sbjct: 88 PKEGVMKINTDAAISATMVRTGLGIIARNWHGVIVRAKGITERKRGEAATEETLAIRGEL 147 Query: 73 KLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVEDIWNLSNLFAECSFKYIPREL 132 ++A IE+ SDC + ++ C ++ +EDI L F C+F ++PR Sbjct: 148 EMAQIAGWTNIEVQSDCKNVVSLINTGNVQDCKLQTILEDIEILKMRFDRCAFSFVPRTA 207 Query: 133 NSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD 168 N + ++A+ A +S N W S P W+ +L D Sbjct: 208 NGCSHAMAQFAVKSVRNIEWESSFPNWLSALARKD 242
BLAST of Lag0029089 vs. NCBI nr
Match:
XP_027088768.1 (uncharacterized protein LOC113710130 [Coffea arabica])
HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 47/155 (30.32%), Postives = 76/155 (49.03%), Query Frame = 0
Query: 13 PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGM 72 P +K DAA+ TGIGV+ N G ++ A E + E AI+ GM Sbjct: 38 PSRGTIKLNTDAAFSQNLERTGIGVVARNAEGELMKVWARAELKRSEPQVEEAAAIRMGM 97 Query: 73 KLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVEDIWNLSNLFAECSFKYIPREL 132 ++A + +E+ SDC + + ++K + N+ V +EDI N+ LF +C+F ++ R+ Sbjct: 98 QMAWKANWRAVELQSDCKEVVDMINKKQKQQNNIVVILEDIANMRCLFEQCTFSFVHRDG 157 Query: 133 NSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD 168 N A S+AK A + N W P W+ + D Sbjct: 158 NRCAHSVAKFAVKLTTNVEWDECFPMWLQEEAQND 192
The following BLAST results are available for this feature:
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G T T T G A G C C A G C G A A A A G G G C G G A G G A T C A A C A T C C G G A T T C T G A T C T C C T C A A A T T T T T T G T C G A T G C A G C C T G G T T A T C C A T C C C T C C A G A A A C A G G A A T T G G A G T C A T C T G C A T G A A C C A C C A T G G T A A T G T A G T T G G C G C T A G T G C T T C C T T C A T A G A A A T G G A T T T T G A A G C C C C C C T T G C T G A G T T G A A G G C C A T A A A A G A A G G G A T G A A G C T T G C T T T A A A T T T T G A C T G C C C T A A A A T C G A A A T T T A T T C T G A C T G T C T A C A A G C A A T T A A A T T C G T G T C A A A A G C C A C A G A G C C T T G G T G T A A T G T G G A G G T G C A A G T G G A G G A T A T T T G G A A T T T G T C T A A T C T G T T T G C A G A A T G T A G T T T T A A G T A T A T C C C A A G A G A G C T G A A T T C C C T A G C T G A T A G C T T A G C T A A G A A G G C T A A A C G A T C G G G T A T T A A T G A T G T A T G G G T T G G T T C A A T C C C A G A G T G G A T T G T T T C G T T G G T C G A G T A T G A C C G T T C T A T C T C T G C C C A C G T G G C G T A A 50 100 150 200 250 300 350 400 450 500 Expect = 8.7E-23 / Score = 80.5 Expect = 1.5E-17 / Score = 65.9 Score = Score = Expect = 7.27487E-27 / Score = 96.2292 Score = Sequence PF13456 G3DSA:3.30.420.10 PTHR33033 PTHR33033:SF67 cd06222 SSF53098
IPR Term IPR Description Source Source Term Source Description Alignment
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 22..143 e-value: 8.7E-23 score: 80.5
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 17..144 e-value: 1.5E-17 score: 65.9
None No IPR available PANTHER PTHR33033 POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED coord: 13..164
None No IPR available PANTHER PTHR33033:SF67 SUBFAMILY NOT NAMED coord: 13..164
IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 21..141 e-value: 7.27487E-27 score: 96.2292
IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 17..145
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
molecular_function
GO:0004523
RNA-DNA hybrid ribonuclease activity