Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAGTGGGGACGCTGAACGGAGATCAACGATGGTCCCTCCCCGGGAAGACTGCTCCTGTCACCGACGAGACCCAGGGCATAGGGTTTGTTTATTATTCTTCTACACATCCACCATTTTAATTTTCTTTATAATTACTTATGTCCTATTTGATAACCGTTTTTTTTTTTTTTTTGACAACATGTGAGGGTGGGGGATTCAAACCATAGACCTTTTGGTCATTAGTATAAGACTTATGCTAGTTGAGTTATGTTCATGTTGGTTTATAAACATCTATTCATCAGTTTATTATTTAATCATCTACATTTTTTTTTCTATGTTCTCAAAAATTTAAGAATGTTTTGAAAATTAAAAAGAATGGTTTTCAAAAACTTATTTTAATTTTGTTTAGAATTCAAATGTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTAGAAGAATTCAAATGTATTCTTAACAAAAGATGAAAACTATTATTAGAAAATTAGAAGAAAAAAACATTATTTTAAAAAATCAAATGTCTATCAAATGGGATTTTAAAAATTCAAATGTGATGAAGTTAGGTTTAAAATGTATTTTGAGATTCTTTTTTTTTTATTTTAAAACTAATTTTCCTTATTATTTTGAAGTTAGTTTTTGTTTATTCGATAACAACAACAATAATTTTCATTCCAAAAGAGTACCATGTAAATATATTTATCAAATTTGTAGACAAAAAACCTGAATTTATTGAAAAGGACTGAAATTGAATATTTTATAATATGAAGATTAGAAAAGAAAAAAAAGTTACAAAGTATAAAAACTAAAAGCAGTATTTTTAATTATAGCTTTAATTTATTGTTGGAGATTATTTGGTTGCATACCGCTTAAGTATCTCCACACACACCATCAATACAAATTTCTCATTTTATACATTTCTCTCTCTTATTTGTACGATCACGTATTACTTTTTATTATTACATGACTAAATTGAAGTAATGCTGGCCAAATTTGTAATTGAACTTCCTTTTTAACTCCTTTTTTCTCTTCCATTTTCATTTACTTGTGTGTTGAAATAAAATAATGACACAGTGTGGAAGAACTAGCAGCAGTTGGAGCCAGAGTCCACACTTGTTCTCGTCACCAAGCAGAGATCGATCAATGTCTACAAGAATGGCGAAGCAAGGGCTTTCAAGTGACCGCCTCCGTCTGTGATAATGTTTCTGTTTCTCGTTTCTCGTTTTTCATTTCTCGTTACAATAGATATTAAGAAGTTTGTTTTGTTTTGTTTTCAATCTTAGGTTAATAATGCTGGGTTGAGTTTGTTCAAGAGCAGCACAACAGTTACAGATCAAGACATTTCATCAGTAATGGGTACAAATTTTGAGGCATCGTTTAATTTTTCCCAACTTGCCACACCCATTGCTCAAAGCATCAGAATCTGGAAGCATTGTGTTCATCTCTTCAGTTGCAGAGGTCACTTCACTTCCATTTGGTACTCTTTATGCTGCTTCTAA
mRNA sequence
ATGGCGGCAGTGGGGACGCTGAACGGAGATCAACGATGGTCCCTCCCCGGGAAGACTGCTCCTGTCACCGACGAGACCCAGGGCATAGGTGTGGAAGAACTAGCAGCAGTTGGAGCCAGAGTCCACACTTGTTCTCGTCACCAAGCAGAGATCGATCAATGTCTACAAGAATGGCGAAGCAAGGGCTTTCAAGTGACCGCCTCCGTCTGTGATAATGTTAATAATGCTGGGTTGAGTTTGTTCAAGAGCAGCACAACAGTTACAGATCAAGACATTTCATCAGTAATGGGTACAAATTTTGAGGCATCGTTTAATTTTTCCCAACTTGCCACACCCATTGCTCAAAGCATCAGAATCTGGAAGCATTGTGTTCATCTCTTCAGTTGCAGAGGTCACTTCACTTCCATTTGGTACTCTTTATGCTGCTTCTAA
Coding sequence (CDS)
ATGGCGGCAGTGGGGACGCTGAACGGAGATCAACGATGGTCCCTCCCCGGGAAGACTGCTCCTGTCACCGACGAGACCCAGGGCATAGGTGTGGAAGAACTAGCAGCAGTTGGAGCCAGAGTCCACACTTGTTCTCGTCACCAAGCAGAGATCGATCAATGTCTACAAGAATGGCGAAGCAAGGGCTTTCAAGTGACCGCCTCCGTCTGTGATAATGTTAATAATGCTGGGTTGAGTTTGTTCAAGAGCAGCACAACAGTTACAGATCAAGACATTTCATCAGTAATGGGTACAAATTTTGAGGCATCGTTTAATTTTTCCCAACTTGCCACACCCATTGCTCAAAGCATCAGAATCTGGAAGCATTGTGTTCATCTCTTCAGTTGCAGAGGTCACTTCACTTCCATTTGGTACTCTTTATGCTGCTTCTAA
Protein sequence
MAAVGTLNGDQRWSLPGKTAPVTDETQGIGVEELAAVGARVHTCSRHQAEIDQCLQEWRSKGFQVTASVCDNVNNAGLSLFKSSTTVTDQDISSVMGTNFEASFNFSQLATPIAQSIRIWKHCVHLFSCRGHFTSIWYSLCCF
Homology
BLAST of Lag0027176 vs. NCBI nr
Match:
XP_022159090.1 (tropinone reductase homolog At5g06060-like isoform X1 [Momordica charantia])
HSP 1 Score: 151.8 bits (382), Expect = 4.6e-33
Identity = 85/143 (59.44%), Postives = 99/143 (69.23%), Query Frame = 0
Query: 1 MAAVGTLNGDQRWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQE 60
MA VG L+ DQRWSL GK A VT T+GIG VEELAA+GA VHTCSR+Q E+DQ LQ+
Sbjct: 31 MAEVGMLSRDQRWSLTGKAALVTGGTRGIGRAIVEELAALGASVHTCSRNQVELDQILQQ 90
Query: 61 WRSKGFQVTASVCD------------------------NVNNAGLSLFKSSTTVTDQDIS 117
WR++GFQV+ SVCD VNNAGLSLFKSST VT+QDIS
Sbjct: 91 WRNQGFQVSGSVCDVLVKEQREKLIETVSSLFGGKLNILVNNAGLSLFKSSTAVTEQDIS 150
BLAST of Lag0027176 vs. NCBI nr
Match:
XP_022159091.1 (senescence-associated protein 13-like isoform X2 [Momordica charantia])
HSP 1 Score: 151.8 bits (382), Expect = 4.6e-33
Identity = 85/143 (59.44%), Postives = 99/143 (69.23%), Query Frame = 0
Query: 1 MAAVGTLNGDQRWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQE 60
MA VG L+ DQRWSL GK A VT T+GIG VEELAA+GA VHTCSR+Q E+DQ LQ+
Sbjct: 31 MAEVGMLSRDQRWSLTGKAALVTGGTRGIGRAIVEELAALGASVHTCSRNQVELDQILQQ 90
Query: 61 WRSKGFQVTASVCD------------------------NVNNAGLSLFKSSTTVTDQDIS 117
WR++GFQV+ SVCD VNNAGLSLFKSST VT+QDIS
Sbjct: 91 WRNQGFQVSGSVCDVLVKEQREKLIETVSSLFGGKLNILVNNAGLSLFKSSTAVTEQDIS 150
BLAST of Lag0027176 vs. NCBI nr
Match:
XP_015897157.1 (tropinone reductase homolog isoform X1 [Ziziphus jujuba])
HSP 1 Score: 125.9 bits (315), Expect = 2.7e-25
Identity = 66/136 (48.53%), Postives = 90/136 (66.18%), Query Frame = 0
Query: 8 NGDQRWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQEWRSKGFQ 67
+G+ RW+L GKTA VT T+GIG VEELA GA +HTCSR+Q E+DQCL +W+SKGFQ
Sbjct: 8 SGENRWTLQGKTALVTGGTKGIGHAIVEELAGFGATIHTCSRNQNELDQCLGKWKSKGFQ 67
Query: 68 VTASVCD------------------------NVNNAGLSLFKSSTTVTDQDISSVMGTNF 117
V+ SVCD VNNAG+++ KS+T VT QD S++MGTNF
Sbjct: 68 VSGSVCDVLYRDQREKLIETLSSLFEGKLNILVNNAGMTIPKSTTEVTAQDFSTIMGTNF 127
BLAST of Lag0027176 vs. NCBI nr
Match:
XP_022941371.1 (tropinone reductase homolog [Cucurbita moschata])
HSP 1 Score: 124.8 bits (312), Expect = 6.0e-25
Identity = 69/134 (51.49%), Postives = 84/134 (62.69%), Query Frame = 0
Query: 10 DQRWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQEWRSKGFQVT 69
DQRWSL G TA VT T GIG VEELAA GA VHTCSR Q ++D+CL+EW GF V+
Sbjct: 7 DQRWSLQGMTALVTGGTHGIGRATVEELAAFGATVHTCSRSQGDLDKCLKEWEEMGFNVS 66
Query: 70 ASVCD------------------------NVNNAGLSLFKSSTTVTDQDISSVMGTNFEA 117
SVCD VNNAG S +KSS VT++++SSVM TNFEA
Sbjct: 67 GSVCDVHSREQRMQLIETVSSLFNGSLNILVNNAGTSAYKSSLEVTEEELSSVMSTNFEA 126
BLAST of Lag0027176 vs. NCBI nr
Match:
KAF3449095.1 (hypothetical protein FNV43_RR09819 [Rhamnella rubrinervis])
HSP 1 Score: 124.0 bits (310), Expect = 1.0e-24
Identity = 67/134 (50.00%), Postives = 86/134 (64.18%), Query Frame = 0
Query: 10 DQRWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQEWRSKGFQVT 69
D RWSL G TA VT T+GIG VEELA GA +HTCSR+QA++DQCL+EW+SKGF V+
Sbjct: 10 DTRWSLKGTTALVTGGTRGIGHAIVEELAGFGATIHTCSRNQAQLDQCLEEWKSKGFNVS 69
Query: 70 ASVCD------------------------NVNNAGLSLFKSSTTVTDQDISSVMGTNFEA 117
SVCD VNNAG L K++ VT Q++S++MGTNFE+
Sbjct: 70 GSVCDLLYWDQRQKLMGTVSSVFQGKLNILVNNAGTVLLKNTEDVTAQELSTIMGTNFES 129
BLAST of Lag0027176 vs. ExPASy Swiss-Prot
Match:
P50165 (Tropinone reductase homolog OS=Datura stramonium OX=4076 PE=2 SV=1)
HSP 1 Score: 113.2 bits (282), Expect = 2.4e-24
Identity = 62/135 (45.93%), Postives = 82/135 (60.74%), Query Frame = 0
Query: 9 GDQRWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQEWRSKGFQV 68
GD+RWSL G TA VT T+GIG VEELA GA V+TCSR Q ++D+CL++WR KGF+V
Sbjct: 9 GDRRWSLRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKV 68
Query: 69 TASVCD------------------------NVNNAGLSLFKSSTTVTDQDISSVMGTNFE 117
+ VCD +NNAG ++ K +T T +D S +MGTNFE
Sbjct: 69 SGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFE 128
BLAST of Lag0027176 vs. ExPASy Swiss-Prot
Match:
Q9ZW18 (Senescence-associated protein 13 OS=Arabidopsis thaliana OX=3702 GN=SAG13 PE=1 SV=1)
HSP 1 Score: 110.9 bits (276), Expect = 1.2e-23
Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = 0
Query: 1 MAAVGTLNGDQRWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQE 60
MA G L + RWSL G TA VT ++GIG VEELA +GA+VHTC+R + ++ + L+E
Sbjct: 1 MAKEGGLGENSRWSLGGMTALVTGGSKGIGEAVVEELAMLGAKVHTCARDETQLQERLRE 60
Query: 61 WRSKGFQVTASVCD------------------------NVNNAGLSLFKSSTTVTDQDIS 117
W++KGFQVT SVCD VNN G S+FK +T T +D S
Sbjct: 61 WQAKGFQVTTSVCDVSSRDQRVKLMETVSSLYQGKLNILVNNVGTSIFKPTTEYTAEDFS 120
BLAST of Lag0027176 vs. ExPASy Swiss-Prot
Match:
Q9ZW04 (Tropinone reductase homolog At2g29170 OS=Arabidopsis thaliana OX=3702 GN=At2g29170 PE=3 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 8.5e-22
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 0
Query: 12 RWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQEWRSKGFQVTAS 71
RWSL G TA VT ++G+G VEELA +GARVHTC+R++ ++ +C++EW++KGF+VT S
Sbjct: 13 RWSLGGMTALVTGGSKGLGEAVVEELAMLGARVHTCARNETQLQECVREWQAKGFEVTTS 72
Query: 72 VCD------------------------NVNNAGLSLFKSSTTVTDQDISSVMGTNFEASF 117
VCD VNNAG + K +T T QD S +M TN +++F
Sbjct: 73 VCDVSSRDQREKLMENVASIFQGKLNILVNNAGTGITKPTTEYTAQDYSFLMATNLDSAF 132
BLAST of Lag0027176 vs. ExPASy Swiss-Prot
Match:
A7DY56 (Tropinone reductase OS=Cochlearia officinalis OX=270110 GN=TR PE=1 SV=1)
HSP 1 Score: 104.4 bits (259), Expect = 1.1e-21
Identity = 59/132 (44.70%), Postives = 78/132 (59.09%), Query Frame = 0
Query: 12 RWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQEWRSKGFQVTAS 71
RWSL G TA VT ++GIG VEELA +GARVHTC+R + ++ + L+EW++KGFQVT S
Sbjct: 13 RWSLEGMTALVTGGSKGIGEAVVEELAMLGARVHTCARDETQLQESLREWQAKGFQVTTS 72
Query: 72 VCD------------------------NVNNAGLSLFKSSTTVTDQDISSVMGTNFEASF 117
VCD VNNAG + K + T +D S +M TN E+SF
Sbjct: 73 VCDVSSRDQREKLMETVSSLFQGKLNILVNNAGTCITKPTIDYTSEDFSFLMSTNLESSF 132
BLAST of Lag0027176 vs. ExPASy Swiss-Prot
Match:
Q9ZW03 (Tropinone reductase homolog At2g29150 OS=Arabidopsis thaliana OX=3702 GN=At2g29150 PE=1 SV=1)
HSP 1 Score: 103.6 bits (257), Expect = 1.9e-21
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 0
Query: 1 MAAVGTLNGDQ-RWSLPGKTAPVTDETQGIG---VEELAAVGARVHTCSRHQAEIDQCLQ 60
MA G + D+ RWSL G TA VT ++G+G VEELA +GARVHTC+R + ++ + L+
Sbjct: 1 MAKAGENSRDKSRWSLEGMTALVTGGSKGLGEAVVEELAMLGARVHTCARDETQLQERLR 60
Query: 61 EWRSKGFQVTASVCD------------------------NVNNAGLSLFKSSTTVTDQDI 117
EW++KGF+VT SVCD VNNAG + K ST T +D
Sbjct: 61 EWQAKGFEVTTSVCDVSSREQREKLMETVSSVFQGKLNILVNNAGTGIIKPSTEYTAEDY 120
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022159090.1 | 4.6e-33 | 59.44 | tropinone reductase homolog At5g06060-like isoform X1 [Momordica charantia] | [more] |
| XP_022159091.1 | 4.6e-33 | 59.44 | senescence-associated protein 13-like isoform X2 [Momordica charantia] | [more] |
| XP_015897157.1 | 2.7e-25 | 48.53 | tropinone reductase homolog isoform X1 [Ziziphus jujuba] | [more] |
| XP_022941371.1 | 6.0e-25 | 51.49 | tropinone reductase homolog [Cucurbita moschata] | [more] |
| KAF3449095.1 | 1.0e-24 | 50.00 | hypothetical protein FNV43_RR09819 [Rhamnella rubrinervis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P50165 | 2.4e-24 | 45.93 | Tropinone reductase homolog OS=Datura stramonium OX=4076 PE=2 SV=1 | [more] |
| Q9ZW18 | 1.2e-23 | 44.06 | Senescence-associated protein 13 OS=Arabidopsis thaliana OX=3702 GN=SAG13 PE=1 S... | [more] |
| Q9ZW04 | 8.5e-22 | 42.42 | Tropinone reductase homolog At2g29170 OS=Arabidopsis thaliana OX=3702 GN=At2g291... | [more] |
| A7DY56 | 1.1e-21 | 44.70 | Tropinone reductase OS=Cochlearia officinalis OX=270110 GN=TR PE=1 SV=1 | [more] |
| Q9ZW03 | 1.9e-21 | 41.67 | Tropinone reductase homolog At2g29150 OS=Arabidopsis thaliana OX=3702 GN=At2g291... | [more] |
