Sequences
The following sequences are available for this feature:
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACTGTTCTATCTCGGAGAAGAATTCTCTCAGTTTCAAGGTTTTCTTCGCAATCCAAAGCTGCAGTTTCCACGGCCTGTTCTTTAACCATACTTTCAATTTTAGTTCTAACGATGATAACCAGAAGCCTGCGCCGATTCCTTCAACGATCCTTTTCGTCTCCG GCTGTACTCTGCCCACTGCCTGGTTATAGGGTTCTGCCATTGTTTAACTGCATATTCATGGGATTGTTTGATGTTGCAGGGCAGAATGAGGGAAGTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATTTGGTGAAGTTGTTCAGG AAGAAGCAGAGAAAGGAATGAAAGGGATGGATGCACAG TTTTTTGATGGGTGGGTGATATTTGCAGGATATGCAAGGCCTAGAAGTCCCCAAGGGTATACATCTTCTCCAAATAAACCAATCTGCTAG
ATGAAAACTGTTCTATCTCGGAGAAGAATTCTCTCAGTTTCAAGGTTTTCTTCGCAATCCAAAGCTGCAGTTTCCACGGCCTGTTCTTTAACCATACTTTCAATTTTAGTTCTAACGATGATAACCAGAAGCCTGCGCCGATTCCTTCAACGATCCTTTTCGTCTCCGGCTGTACTCTGCCCACTGCCTGGTTATAGGGTTCTGCCATTGTTTAACTGCATATTCATGGGATTGTTTGATGTTGCAGGGCAGAATGAGGGAAGTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATTTGGTGAAGTTGTTCAGGAAGAAGCAGAGAAAGGAATGAAAGGGATGGATGCACAGTTTTTTGATGGGTGGGTGATATTTGCAGGATATGCAAGGCCTAGAAGTCCCCAAGGGTATACATCTTCTCCAAATAAACCAATCTGCTAG
ATGAAAACTGTTCTATCTCGGAGAAGAATTCTCTCAGTTTCAAGGTTTTCTTCGCAATCCAAAGCTGCAGTTTCCACGGCCTGTTCTTTAACCATACTTTCAATTTTAGTTCTAACGATGATAACCAGAAGCCTGCGCCGATTCCTTCAACGATCCTTTTCGTCTCCGGCTGTACTCTGCCCACTGCCTGGTTATAGGGTTCTGCCATTGTTTAACTGCATATTCATGGGATTGTTTGATGTTGCAGGGCAGAATGAGGGAAGTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATTTGGTGAAGTTGTTCAGGAAGAAGCAGAGAAAGGAATGAAAGGGATGGATGCACAGTTTTTTGATGGGTGGGTGATATTTGCAGGATATGCAAGGCCTAGAAGTCCCCAAGGGTATACATCTTCTCCAAATAAACCAATCTGCTAG
MKTVLSRRRILSVSRFSSQSKAAVSTACSLTILSILVLTMITRSLRRFLQRSFSSPAVLCPLPGYRVLPLFNCIFMGLFDVAGQNEGSTSEKLGEAFSKFGEVVQEEAEKGMKGMDAQFFDGWVIFAGYARPRSPQGYTSSPNKPIC
Homology
BLAST of Lag0027140 vs. NCBI nr
Match:
XP_011624062.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Amborella trichopoda])
HSP 1 Score: 78.2 bits (191), Expect = 6.7e-11
Identity = 56/128 (43.75%), Postives = 64/128 (50.00%), Query Frame = 0
BLAST of Lag0027140 vs. NCBI nr
Match:
XP_042455208.1 (organelle RRM domain-containing protein 2, mitochondrial-like isoform X2 [Zingiber officinale])
HSP 1 Score: 75.5 bits (184), Expect = 4.3e-10
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 0
BLAST of Lag0027140 vs. NCBI nr
Match:
XP_042462953.1 (organelle RRM domain-containing protein 2, mitochondrial-like isoform X2 [Zingiber officinale])
HSP 1 Score: 75.1 bits (183), Expect = 5.6e-10
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 0
BLAST of Lag0027140 vs. NCBI nr
Match:
KAG0451244.1 (hypothetical protein HPP92_026544 [Vanilla planifolia])
HSP 1 Score: 75.1 bits (183), Expect = 5.6e-10
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0
BLAST of Lag0027140 vs. NCBI nr
Match:
KAG9444964.1 (hypothetical protein H6P81_016304 [Aristolochia fimbriata])
HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 0
BLAST of Lag0027140 vs. ExPASy Swiss-Prot
Match:
Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)
HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_011624062.1 6.7e-11 43.75 glycine-rich RNA-binding protein 3, mitochondrial-like [Amborella trichopoda] [more] XP_042455208.1 4.3e-10 56.34 organelle RRM domain-containing protein 2, mitochondrial-like isoform X2 [Zingib... [more] XP_042462953.1 5.6e-10 56.34 organelle RRM domain-containing protein 2, mitochondrial-like isoform X2 [Zingib... [more] KAG0451244.1 5.6e-10 66.04 hypothetical protein HPP92_026544 [Vanilla planifolia] [more] KAG9444964.1 2.8e-09 48.10 hypothetical protein H6P81_016304 [Aristolochia fimbriata] [more]
Match Name E-value Identity Description
Q9FIU6 1.7e-04 53.49 Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G A A A A C T G T T C T A T C T C G G A G A A G A A T T C T C T C A G T T T C A A G G T T T T C T T C G C A A T C C A A A G C T G C A G T T T C C A C G G C C T G T T C T T T A A C C A T A C T T T C A A T T T T A G T T C T A A C G A T G A T A A C C A G A A G C C T G C G C C G A T T C C T T C A A C G A T C C T T T T C G T C T C C G G C T G T A C T C T G C C C A C T G C C T G G T T A T A G G G T T C T G C C A T T G T T T A A C T G C A T A T T C A T G G G A T T G T T T G A T G T T G C A G G G C A G A A T G A G G G A A G T A C A T C T G A A A A A C T T G G G G A A G C A T T C T C C A A A T T T G G T G A A G T T G T T C A G G A A G A A G C A G A G A A A G G A A T G A A A G G G A T G G A T G C A C A G T T T T T T G A T G G G T G G G T G A T A T T T G C A G G A T A T G C A A G G C C T A G A A G T C C C C A A G G G T A T A C A T C T T C T C C A A A T A A A C C A A T C T G C T A G 50 100 150 200 250 300 350 400 Score = Score = Score = Sequence PTHR48029:SF5 PTHR48029 SSF54928
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PANTHER PTHR48029:SF5 ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 2, MITOCHONDRIAL-LIKE coord: 106..140 None No IPR available PANTHER PTHR48029 NUCLEOLAR PROTEIN 8 coord: 106..140 IPR035979 RNA-binding domain superfamily SUPERFAMILY 54928 RNA-binding domain, RBD coord: 86..133
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
