Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGATTGCAGTTCTTTGACTGAGTCTGGTGGGTCTTCCACTTCTTCCCCACCCAATTCATCAGCTGAATCACTCAATGGCCTCAAATTTGGACAGAAGATTTACTTTGAAGATGTGGGTATTGGAGAGCTTCCCAAATCAGGTGGGGGATCTTTCTCATCTTCAGCTGTTATTGCATCAACACCCACCAAGAAGCCTAGGGGAGGCGTTGTTCAGGCGGCTCAGCCCCCTAGGTGTCAGGTTGAAGGCTGTAAAGTAGATCTAAGTGATGCTAAGGCTTACTATTCCAGACACAAAGTTTGTACTATGCACTCCAAATCCCCTAAGGTCATTGTTGCTGGTCTTGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTCAGCTGGTTTCTCTCAATCTTGGTTTTGCAATCATTCTCCTTATGAGTTCTAA
mRNA sequence
ATGGAAATGGATTGCAGTTCTTTGACTGAGTCTGGTGGGTCTTCCACTTCTTCCCCACCCAATTCATCAGCTGAATCACTCAATGGCCTCAAATTTGGACAGAAGATTTACTTTGAAGATGTGGGTATTGGAGAGCTTCCCAAATCAGGTGGGGGATCTTTCTCATCTTCAGCTGTTATTGCATCAACACCCACCAAGAAGCCTAGGGGAGGCGTTGTTCAGGCGGCTCAGCCCCCTAGGTGTCAGGTTGAAGGCTGTAAAGTAGATCTAAGTGATGCTAAGGCTTACTATTCCAGACACAAAGTTTGTACTATGCACTCCAAATCCCCTAAGGTCATTGTTGCTGGTCTTGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTCAGCTGGTTTCTCTCAATCTTGGTTTTGCAATCATTCTCCTTATGAGTTCTAA
Coding sequence (CDS)
ATGGAAATGGATTGCAGTTCTTTGACTGAGTCTGGTGGGTCTTCCACTTCTTCCCCACCCAATTCATCAGCTGAATCACTCAATGGCCTCAAATTTGGACAGAAGATTTACTTTGAAGATGTGGGTATTGGAGAGCTTCCCAAATCAGGTGGGGGATCTTTCTCATCTTCAGCTGTTATTGCATCAACACCCACCAAGAAGCCTAGGGGAGGCGTTGTTCAGGCGGCTCAGCCCCCTAGGTGTCAGGTTGAAGGCTGTAAAGTAGATCTAAGTGATGCTAAGGCTTACTATTCCAGACACAAAGTTTGTACTATGCACTCCAAATCCCCTAAGGTCATTGTTGCTGGTCTTGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTCAGCTGGTTTCTCTCAATCTTGGTTTTGCAATCATTCTCCTTATGAGTTCTAA
Protein sequence
MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQCSRSAGFSQSWFCNHSPYEF
Homology
BLAST of Lag0026621 vs. NCBI nr
Match:
XP_004136576.1 (squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315.1 hypothetical protein Csa_001653 [Cucumis sativus])
HSP 1 Score: 248.8 bits (634), Expect = 2.8e-62
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 0
Query: 1 MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60
MEMDCSSLTESGGSS SSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI
Sbjct: 1 MEMDCSSLTESGGSSNSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60
Query: 61 ASTPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120
ASTPTKKPRGGVVQAAQPPRCQVEGC+VDL+DAKAYYSRHKVCTMHSKSPKVIVAGLEQR
Sbjct: 61 ASTPTKKPRGGVVQAAQPPRCQVEGCRVDLTDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120
Query: 121 FCQQCSR 128
FCQQCSR
Sbjct: 121 FCQQCSR 127
BLAST of Lag0026621 vs. NCBI nr
Match:
XP_038905618.1 (squamosa promoter-binding-like protein 17 [Benincasa hispida])
HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 123/127 (96.85%), Postives = 126/127 (99.21%), Query Frame = 0
Query: 1 MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60
MEMDCS+LTESGGSS SSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSA+I
Sbjct: 1 MEMDCSTLTESGGSSNSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAII 60
Query: 61 ASTPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120
ASTPTKKPRGGVVQAAQPPRCQVEGC+VDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR
Sbjct: 61 ASTPTKKPRGGVVQAAQPPRCQVEGCRVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120
Query: 121 FCQQCSR 128
FCQQCSR
Sbjct: 121 FCQQCSR 127
BLAST of Lag0026621 vs. NCBI nr
Match:
KAA0043721.1 (squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa] >TYK25412.1 squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 124/133 (93.23%), Postives = 128/133 (96.24%), Query Frame = 0
Query: 3 MDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIAS 62
MDCSSLTESGGSS SSPPNSSAESLNGLKFGQKIYFEDVGI ELPKSGGGSFSSSAVIAS
Sbjct: 1 MDCSSLTESGGSSNSSPPNSSAESLNGLKFGQKIYFEDVGIAELPKSGGGSFSSSAVIAS 60
Query: 63 TPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFC 122
TPTKKPRGGVV AQPPRCQVEGC+VDL+DAKAYYSRHKVCTMHSKSPKVIVAGLEQRFC
Sbjct: 61 TPTKKPRGGVVHPAQPPRCQVEGCRVDLTDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFC 120
Query: 123 QQCSRSAGFSQSW 136
QQCSRS GFS+S+
Sbjct: 121 QQCSRSVGFSKSF 133
BLAST of Lag0026621 vs. NCBI nr
Match:
XP_008443072.1 (PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo])
HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0
Query: 1 MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60
MEMDCSSLTESGGSS SSPPNSSAESLNGLKFGQKIYFEDVGI ELPKSGGGSFSSSAVI
Sbjct: 1 MEMDCSSLTESGGSSNSSPPNSSAESLNGLKFGQKIYFEDVGIAELPKSGGGSFSSSAVI 60
Query: 61 ASTPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120
ASTPTKKPRGGVV AQPPRCQVEGC+VDL+DAKAYYSRHKVCTMHSKSPKVIVAGLEQR
Sbjct: 61 ASTPTKKPRGGVVHPAQPPRCQVEGCRVDLTDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120
Query: 121 FCQQCSR 128
FCQQCSR
Sbjct: 121 FCQQCSR 127
BLAST of Lag0026621 vs. NCBI nr
Match:
XP_022971504.1 (squamosa promoter-binding-like protein 9 [Cucurbita maxima])
HSP 1 Score: 241.1 bits (614), Expect = 5.8e-60
Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 0
Query: 1 MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60
MEMDCSSLTESGGS+TSSPP SSAESLNGLKFG KIYFEDVGIGELPKSGGGSFSSSAVI
Sbjct: 12 MEMDCSSLTESGGSTTSSPPISSAESLNGLKFGHKIYFEDVGIGELPKSGGGSFSSSAVI 71
Query: 61 ASTPTKKPR-GGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQ 120
ASTPTKKPR GGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAG+EQ
Sbjct: 72 ASTPTKKPRGGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGIEQ 131
Query: 121 RFCQQCSR 128
RFCQQCSR
Sbjct: 132 RFCQQCSR 139
BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match:
Q700W2 (Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=SPL9 PE=2 SV=2)
HSP 1 Score: 118.6 bits (296), Expect = 5.7e-26
Identity = 70/119 (58.82%), Postives = 81/119 (68.07%), Query Frame = 0
Query: 10 ESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTPTKKPR 69
ESGGSST S S GL FGQKIYFED GGGS SSS+ ++ R
Sbjct: 17 ESGGSSTESSSFS-----GGLMFGQKIYFED--------GGGGSGSSSS--GGRSNRRVR 76
Query: 70 -GGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQCSR 128
GG Q+ Q PRCQVEGC +DL++AK YYSRH+VC +HSK+PKV VAG+EQRFCQQCSR
Sbjct: 77 GGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSR 120
BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match:
Q7EXZ2 (Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL14 PE=2 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 5.4e-24
Identity = 68/133 (51.13%), Postives = 77/133 (57.89%), Query Frame = 0
Query: 12 GGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGE-LPKSGGGSFSSSAVIASTPTKKPRG 71
GGS L+GLKFG+KIYFED +G GS S+SA S+ +K G
Sbjct: 18 GGSGGGGGGGDEHRQLHGLKFGKKIYFEDAAAAAGGGGTGSGSGSASAAPPSSSSKAAGG 77
Query: 72 -----------GVVQAA-----QPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIV 128
GV AA PPRCQVEGC DLS K YY RHKVC MHSK+P+V+V
Sbjct: 78 GRGGGGKNKGKGVAAAAPPPPPPPPRCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVV 137
BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match:
S4WUL1 (Squamosa promoter-binding protein-like 15 OS=Arabis alpina OX=50452 GN=SPL15 PE=2 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 65/119 (54.62%), Postives = 79/119 (66.39%), Query Frame = 0
Query: 9 TESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTPTKKP 68
TESGGSS++ S+ GL+FGQKIYFED SG GS SS + +T K
Sbjct: 12 TESGGSSST----ESSSLSGGLRFGQKIYFED-------GSGSGSGSSKNRVHNTGRK-- 71
Query: 69 RGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQCSR 128
+ RCQVEGC++DL++AK+YYSRHKVC +HSKS KVIV+GL QRFCQQCSR
Sbjct: 72 -------SLTARCQVEGCRMDLTNAKSYYSRHKVCCIHSKSSKVIVSGLPQRFCQQCSR 110
BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match:
Q9M2Q6 (Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=SPL15 PE=1 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 65/123 (52.85%), Postives = 78/123 (63.41%), Query Frame = 0
Query: 5 CSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTP 64
CS ESGGSS++ S+ GL+FGQKIYFED G GS S + V
Sbjct: 6 CSGQAESGGSSST----ESSSLSGGLRFGQKIYFED---------GSGSRSKNRV----- 65
Query: 65 TKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQ 124
V +++ RCQVEGC++DLS+ KAYYSRHKVC +HSKS KVIV+GL QRFCQQ
Sbjct: 66 -----NTVRKSSTTARCQVEGCRMDLSNVKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQ 105
Query: 125 CSR 128
CSR
Sbjct: 126 CSR 105
BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match:
A3C057 (Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL17 PE=2 SV=2)
HSP 1 Score: 108.2 bits (269), Expect = 7.7e-23
Identity = 60/121 (49.59%), Postives = 72/121 (59.50%), Query Frame = 0
Query: 11 SGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTPTKKPRG 70
+GGS + ++GLKFG+KIYFE + + SS+ + KK +G
Sbjct: 3 TGGSGGGGGGGGGGDDVHGLKFGKKIYFEQ---DAAASASAAAVESSSTSSGGGGKKGKG 62
Query: 71 GVVQAAQ----PPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQCS 128
AA PPRCQVEGC VDLS K YY RHKVC MH+K P V+VAGLEQRFCQQCS
Sbjct: 63 VAAAAAPPPPLPPRCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCS 120
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_004136576.1 | 2.8e-62 | 97.64 | squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315.1 hypotheti... | [more] |
XP_038905618.1 | 3.6e-62 | 96.85 | squamosa promoter-binding-like protein 17 [Benincasa hispida] | [more] |
KAA0043721.1 | 3.6e-62 | 93.23 | squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa] >... | [more] |
XP_008443072.1 | 2.0e-60 | 95.28 | PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo] | [more] |
XP_022971504.1 | 5.8e-60 | 96.09 | squamosa promoter-binding-like protein 9 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Q700W2 | 5.7e-26 | 58.82 | Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=SPL9... | [more] |
Q7EXZ2 | 5.4e-24 | 51.13 | Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica OX=399... | [more] |
S4WUL1 | 1.6e-23 | 54.62 | Squamosa promoter-binding protein-like 15 OS=Arabis alpina OX=50452 GN=SPL15 PE=... | [more] |
Q9M2Q6 | 1.6e-23 | 52.85 | Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=SPL... | [more] |
A3C057 | 7.7e-23 | 49.59 | Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica OX=399... | [more] |