Lag0026621 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026621
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Squamosa-promoter binding-like protein
Location	chr10: 39709834 .. 39710268 (-)
RNA-Seq Expression	Lag0026621
Synteny	Lag0026621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGGATTGCAGTTCTTTGACTGAGTCTGGTGGGTCTTCCACTTCTTCCCCACCCAATTCATCAGCTGAATCACTCAATGGCCTCAAATTTGGACAGAAGATTTACTTTGAAGATGTGGGTATTGGAGAGCTTCCCAAATCAGGTGGGGGATCTTTCTCATCTTCAGCTGTTATTGCATCAACACCCACCAAGAAGCCTAGGGGAGGCGTTGTTCAGGCGGCTCAGCCCCCTAGGTGTCAGGTTGAAGGCTGTAAAGTAGATCTAAGTGATGCTAAGGCTTACTATTCCAGACACAAAGTTTGTACTATGCACTCCAAATCCCCTAAGGTCATTGTTGCTGGTCTTGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTCAGCTGGTTTCTCTCAATCTTGGTTTTGCAATCATTCTCCTTATGAGTTCTAA

mRNA sequence

ATGGAAATGGATTGCAGTTCTTTGACTGAGTCTGGTGGGTCTTCCACTTCTTCCCCACCCAATTCATCAGCTGAATCACTCAATGGCCTCAAATTTGGACAGAAGATTTACTTTGAAGATGTGGGTATTGGAGAGCTTCCCAAATCAGGTGGGGGATCTTTCTCATCTTCAGCTGTTATTGCATCAACACCCACCAAGAAGCCTAGGGGAGGCGTTGTTCAGGCGGCTCAGCCCCCTAGGTGTCAGGTTGAAGGCTGTAAAGTAGATCTAAGTGATGCTAAGGCTTACTATTCCAGACACAAAGTTTGTACTATGCACTCCAAATCCCCTAAGGTCATTGTTGCTGGTCTTGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTCAGCTGGTTTCTCTCAATCTTGGTTTTGCAATCATTCTCCTTATGAGTTCTAA

Coding sequence (CDS)

ATGGAAATGGATTGCAGTTCTTTGACTGAGTCTGGTGGGTCTTCCACTTCTTCCCCACCCAATTCATCAGCTGAATCACTCAATGGCCTCAAATTTGGACAGAAGATTTACTTTGAAGATGTGGGTATTGGAGAGCTTCCCAAATCAGGTGGGGGATCTTTCTCATCTTCAGCTGTTATTGCATCAACACCCACCAAGAAGCCTAGGGGAGGCGTTGTTCAGGCGGCTCAGCCCCCTAGGTGTCAGGTTGAAGGCTGTAAAGTAGATCTAAGTGATGCTAAGGCTTACTATTCCAGACACAAAGTTTGTACTATGCACTCCAAATCCCCTAAGGTCATTGTTGCTGGTCTTGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTCAGCTGGTTTCTCTCAATCTTGGTTTTGCAATCATTCTCCTTATGAGTTCTAA

Protein sequence

MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQCSRSAGFSQSWFCNHSPYEF

Homology

[Close]

BLAST of Lag0026621 vs. NCBI nr
Match: XP_004136576.1 (squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315.1 hypothetical protein Csa_001653 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 2.8e-62
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60
           MEMDCSSLTESGGSS SSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI
Sbjct: 1   MEMDCSSLTESGGSSNSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60

Query: 61  ASTPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120
           ASTPTKKPRGGVVQAAQPPRCQVEGC+VDL+DAKAYYSRHKVCTMHSKSPKVIVAGLEQR
Sbjct: 61  ASTPTKKPRGGVVQAAQPPRCQVEGCRVDLTDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120

Query: 121 FCQQCSR 128
           FCQQCSR
Sbjct: 121 FCQQCSR 127

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BLAST of Lag0026621 vs. NCBI nr
Match: XP_038905618.1 (squamosa promoter-binding-like protein 17 [Benincasa hispida])

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 123/127 (96.85%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60
           MEMDCS+LTESGGSS SSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSA+I
Sbjct: 1   MEMDCSTLTESGGSSNSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAII 60

Query: 61  ASTPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120
           ASTPTKKPRGGVVQAAQPPRCQVEGC+VDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR
Sbjct: 61  ASTPTKKPRGGVVQAAQPPRCQVEGCRVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120

Query: 121 FCQQCSR 128
           FCQQCSR
Sbjct: 121 FCQQCSR 127

[Close]

BLAST of Lag0026621 vs. NCBI nr
Match: KAA0043721.1 (squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa] >TYK25412.1 squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 124/133 (93.23%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 3   MDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIAS 62
           MDCSSLTESGGSS SSPPNSSAESLNGLKFGQKIYFEDVGI ELPKSGGGSFSSSAVIAS
Sbjct: 1   MDCSSLTESGGSSNSSPPNSSAESLNGLKFGQKIYFEDVGIAELPKSGGGSFSSSAVIAS 60

Query: 63  TPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFC 122
           TPTKKPRGGVV  AQPPRCQVEGC+VDL+DAKAYYSRHKVCTMHSKSPKVIVAGLEQRFC
Sbjct: 61  TPTKKPRGGVVHPAQPPRCQVEGCRVDLTDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFC 120

Query: 123 QQCSRSAGFSQSW 136
           QQCSRS GFS+S+
Sbjct: 121 QQCSRSVGFSKSF 133

[Close]

BLAST of Lag0026621 vs. NCBI nr
Match: XP_008443072.1 (PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60
           MEMDCSSLTESGGSS SSPPNSSAESLNGLKFGQKIYFEDVGI ELPKSGGGSFSSSAVI
Sbjct: 1   MEMDCSSLTESGGSSNSSPPNSSAESLNGLKFGQKIYFEDVGIAELPKSGGGSFSSSAVI 60

Query: 61  ASTPTKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120
           ASTPTKKPRGGVV  AQPPRCQVEGC+VDL+DAKAYYSRHKVCTMHSKSPKVIVAGLEQR
Sbjct: 61  ASTPTKKPRGGVVHPAQPPRCQVEGCRVDLTDAKAYYSRHKVCTMHSKSPKVIVAGLEQR 120

Query: 121 FCQQCSR 128
           FCQQCSR
Sbjct: 121 FCQQCSR 127

[Close]

BLAST of Lag0026621 vs. NCBI nr
Match: XP_022971504.1 (squamosa promoter-binding-like protein 9 [Cucurbita maxima])

HSP 1 Score: 241.1 bits (614), Expect = 5.8e-60
Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVI 60
           MEMDCSSLTESGGS+TSSPP SSAESLNGLKFG KIYFEDVGIGELPKSGGGSFSSSAVI
Sbjct: 12  MEMDCSSLTESGGSTTSSPPISSAESLNGLKFGHKIYFEDVGIGELPKSGGGSFSSSAVI 71

Query: 61  ASTPTKKPR-GGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQ 120
           ASTPTKKPR GGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAG+EQ
Sbjct: 72  ASTPTKKPRGGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGIEQ 131

Query: 121 RFCQQCSR 128
           RFCQQCSR
Sbjct: 132 RFCQQCSR 139

[Close]

BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match: Q700W2 (Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=SPL9 PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 5.7e-26
Identity = 70/119 (58.82%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 10  ESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTPTKKPR 69
           ESGGSST S   S      GL FGQKIYFED         GGGS SSS+       ++ R
Sbjct: 17  ESGGSSTESSSFS-----GGLMFGQKIYFED--------GGGGSGSSSS--GGRSNRRVR 76

Query: 70  -GGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQCSR 128
            GG  Q+ Q PRCQVEGC +DL++AK YYSRH+VC +HSK+PKV VAG+EQRFCQQCSR
Sbjct: 77  GGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSR 120

[Close]

BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match: Q7EXZ2 (Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL14 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.4e-24
Identity = 68/133 (51.13%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 12  GGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGE-LPKSGGGSFSSSAVIASTPTKKPRG 71
           GGS            L+GLKFG+KIYFED         +G GS S+SA   S+ +K   G
Sbjct: 18  GGSGGGGGGGDEHRQLHGLKFGKKIYFEDAAAAAGGGGTGSGSGSASAAPPSSSSKAAGG 77

Query: 72  -----------GVVQAA-----QPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIV 128
                      GV  AA      PPRCQVEGC  DLS  K YY RHKVC MHSK+P+V+V
Sbjct: 78  GRGGGGKNKGKGVAAAAPPPPPPPPRCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVV 137

[Close]

BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match: S4WUL1 (Squamosa promoter-binding protein-like 15 OS=Arabis alpina OX=50452 GN=SPL15 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 65/119 (54.62%), Postives = 79/119 (66.39%), Query Frame = 0


Query: 9   TESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTPTKKP 68
           TESGGSS++     S+    GL+FGQKIYFED        SG GS SS   + +T  K  
Sbjct: 12  TESGGSSST----ESSSLSGGLRFGQKIYFED-------GSGSGSGSSKNRVHNTGRK-- 71

Query: 69  RGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQCSR 128
                  +   RCQVEGC++DL++AK+YYSRHKVC +HSKS KVIV+GL QRFCQQCSR
Sbjct: 72  -------SLTARCQVEGCRMDLTNAKSYYSRHKVCCIHSKSSKVIVSGLPQRFCQQCSR 110

[Close]

BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match: Q9M2Q6 (Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=SPL15 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 65/123 (52.85%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 5   CSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTP 64
           CS   ESGGSS++     S+    GL+FGQKIYFED         G GS S + V     
Sbjct: 6   CSGQAESGGSSST----ESSSLSGGLRFGQKIYFED---------GSGSRSKNRV----- 65

Query: 65  TKKPRGGVVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQ 124
                  V +++   RCQVEGC++DLS+ KAYYSRHKVC +HSKS KVIV+GL QRFCQQ
Sbjct: 66  -----NTVRKSSTTARCQVEGCRMDLSNVKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQ 105

Query: 125 CSR 128
           CSR
Sbjct: 126 CSR 105

[Close]

BLAST of Lag0026621 vs. ExPASy Swiss-Prot
Match: A3C057 (Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL17 PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 7.7e-23
Identity = 60/121 (49.59%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 11  SGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSGGGSFSSSAVIASTPTKKPRG 70
           +GGS          + ++GLKFG+KIYFE         +   +  SS+  +    KK +G
Sbjct: 3   TGGSGGGGGGGGGGDDVHGLKFGKKIYFEQ---DAAASASAAAVESSSTSSGGGGKKGKG 62

Query: 71  GVVQAAQ----PPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQCS 128
               AA     PPRCQVEGC VDLS  K YY RHKVC MH+K P V+VAGLEQRFCQQCS
Sbjct: 63  VAAAAAPPPPLPPRCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCS 120

The following BLAST results are available for this feature:

BLAST of Lag0026621 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136576.1	2.8e-62	97.64	squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315.1 hypotheti...	[more]
XP_038905618.1	3.6e-62	96.85	squamosa promoter-binding-like protein 17 [Benincasa hispida]	[more]
KAA0043721.1	3.6e-62	93.23	squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa] >...	[more]
XP_008443072.1	2.0e-60	95.28	PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo]	[more]
XP_022971504.1	5.8e-60	96.09	squamosa promoter-binding-like protein 9 [Cucurbita maxima]	[more]

BLAST of Lag0026621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q700W2	5.7e-26	58.82	Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=SPL9...	[more]
Q7EXZ2	5.4e-24	51.13	Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica OX=399...	[more]
S4WUL1	1.6e-23	54.62	Squamosa promoter-binding protein-like 15 OS=Arabis alpina OX=50452 GN=SPL15 PE=...	[more]
Q9M2Q6	1.6e-23	52.85	Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=SPL...	[more]
A3C057	7.7e-23	49.59	Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica OX=399...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 77..139 e-value: 4.0E-25 score: 89.9
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 78..127
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 81..128 e-value: 3.7E-19 score: 68.8
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 78..144 score: 18.785311
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR31251:SF128	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17	coord: 1..127
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026621.1	Lag0026621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding