Lag0026608 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026608
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 39625991 .. 39627123 (+)
RNA-Seq Expression	Lag0026608
Synteny	Lag0026608

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCAGGATAAGCTAGTTTGGCATAGTGAAAATGACCTTTATACGGTTCAGAGCGACTATAAGTTGGCTAATATGTTGAAAGAAGGGGCAAACTGCTCAAATCTGAAACTGATGAGGAAATGGTGGAAGTTCTTGTGGGGAAGACAGATGCCAAACAAAATTAAGATCTTTTGCTGGAGGTTGTACCATGACTTTTTACCCACTGTGGTTAATCTCCAAAGAAGAGGTATGGATATTTTGGCAATGTGTCCTAGGTGCAAAATGAAATAGGAGACCAATTTTCATGCTGTTTGGGAGTGTAGGTGGCCAAAGAAGCAATGGAGGCTTTAGCCTTTCTTCCCTATTCTTGGCCCACAATCAATTAGAAATCTGGTTGATTTGCTATGGTGGTGTAGTGTGAATATGGATGCTTCCTATTTTGAGGGTTTTGTTGTCTTATGTTGGTGGGTGTGGAATGGGAGAAATAAGGAGTTGTTTAATGGAGGGGATGCTGGAGGGAGGGATGAGGGGGGTGGAGTTGGGTTTCAGAATATCTGACCCATTTTAGGACTTTTCAAGGGAGGAGAATAGATGAGGGAGGGGCTTGAAAGGAAGAAGTAGAGTGGATTCCTCCAAATTTACCTAATTATAAACTCAATACAGATGTAGCAACAAGCAGAGAAACCCAAACCAGTAGCTTTGGAGCTATTATTAGAAATGGAAAAGGGGAAGTGATGCTTACCGTTGGAAGGTTGGTACAATTTGTGCAAGACGTGGACTCGTTGGAAGCTATGGCAATCCAAGAGAGCTTGTTACTAGAAGGAGAGGTTGGGTTCACGAGGTTGGAGGTGGAGACTGACTCAGCTCGTGTGGCGGCCATGGTTCAATCAAACCAGAGAGATTTTTCGAAGGTTGACATGTTGGTGGATGAAATCAAGTAGATTTTGAGGGAGATGCAGTTTTGTTCGATGTCCTAGTGCCGGAGAGAAGCCAACCGGGTGGCACACGCAGCAGCGAAAATGGTGTTGGAGCGAGGTGTGAAAGGGATCTGGCTGGAGGAGGTGTTGGCGATGTTAGATGAGGTTTATTGCAACGAGGTTTTGGGCATTCAGCCTGTGGTGTCGAGGGCCCCTGTATTTGGTCTTTGTTAG

mRNA sequence

ATGAGTCAGGATAAGCTAGTTTGGCATAGTGAAAATGACCTTTATACGGTTCAGAGCGACTATAAGTTGGCTAATATGTTGAAAGAAGGGGCAAACTGCTCAAATCTGAAACTGATGAGGAAATGGTGGAAGTTCTTGTGGGGAAGACAGATGCCAAACAAAATTAAGATCTTTTGCTGGAGGTTGTACCATGACTTTTTACCCACTGTGGTTAATCTCCAAAGAAGAGATGTAGCAACAAGCAGAGAAACCCAAACCAGTAGCTTTGGAGCTATTATTAGAAATGGAAAAGGGGAAGTGATGCTTACCGTTGGAAGGTTGGTACAATTTGTGCAAGACGTGGACTCGTTGGAAGCTATGGCAATCCAAGAGAGCTTGTTACTAGAAGGAGAGGTTGGGTTCACGAGGTTGGAGGTGGAGACTGACTCAGCTCGTGTGGCGGCCATGGTTCAATCAAACCAGAGAGATTTTTCGAAGTGCCGGAGAGAAGCCAACCGGGTGGCACACGCAGCAGCGAAAATGGTGTTGGAGCGAGGTGTGAAAGGGATCTGGCTGGAGGAGGTGTTGGCGATGTTAGATGAGGTTTATTGCAACGAGGTTTTGGGCATTCAGCCTGTGGTGTCGAGGGCCCCTGTATTTGGTCTTTGTTAG

Coding sequence (CDS)

ATGAGTCAGGATAAGCTAGTTTGGCATAGTGAAAATGACCTTTATACGGTTCAGAGCGACTATAAGTTGGCTAATATGTTGAAAGAAGGGGCAAACTGCTCAAATCTGAAACTGATGAGGAAATGGTGGAAGTTCTTGTGGGGAAGACAGATGCCAAACAAAATTAAGATCTTTTGCTGGAGGTTGTACCATGACTTTTTACCCACTGTGGTTAATCTCCAAAGAAGAGATGTAGCAACAAGCAGAGAAACCCAAACCAGTAGCTTTGGAGCTATTATTAGAAATGGAAAAGGGGAAGTGATGCTTACCGTTGGAAGGTTGGTACAATTTGTGCAAGACGTGGACTCGTTGGAAGCTATGGCAATCCAAGAGAGCTTGTTACTAGAAGGAGAGGTTGGGTTCACGAGGTTGGAGGTGGAGACTGACTCAGCTCGTGTGGCGGCCATGGTTCAATCAAACCAGAGAGATTTTTCGAAGTGCCGGAGAGAAGCCAACCGGGTGGCACACGCAGCAGCGAAAATGGTGTTGGAGCGAGGTGTGAAAGGGATCTGGCTGGAGGAGGTGTTGGCGATGTTAGATGAGGTTTATTGCAACGAGGTTTTGGGCATTCAGCCTGTGGTGTCGAGGGCCCCTGTATTTGGTCTTTGTTAG

Protein sequence

MSQDKLVWHSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATSRETQTSSFGAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDSARVAAMVQSNQRDFSKCRREANRVAHAAAKMVLERGVKGIWLEEVLAMLDEVYCNEVLGIQPVVSRAPVFGLC

Homology

[Close]

BLAST of Lag0026608 vs. NCBI nr
Match: XP_030495196.1 (uncharacterized protein LOC115710989 [Cannabis sativa])

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-12
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 2   SQDKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCW 61
           S D LVW H+ N +YTVQS Y LA+ L E  + S+     KWWK  W  Q+P KIKIF W
Sbjct: 763 SNDCLVWHHTNNGIYTVQSGYHLASSLAEQPHSSSSSSESKWWKSFWSLQLPEKIKIFAW 822

Query: 62  RLYHDFLPTVVNLQRRDVAT 81
           R+ HD LP   +L +R V T
Sbjct: 823 RVIHDALPVATSLVKRKVIT 842

[Close]

BLAST of Lag0026608 vs. NCBI nr
Match: XP_041028005.1 (uncharacterized protein LOC121267980 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 81.6 bits (200), Expect = 8.9e-12
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 0


Query: 1   MSQDKLVWHSE-NDLYTVQSDYKLA--NMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKI 60
           +S+DK +W +E N++++V+S Y     +M  + A  S ++ +   WK LW  ++PNK+KI
Sbjct: 233 VSEDKRLWANEKNEMFSVRSCYWFIFYHMGSQSAESSTMQNLNVLWKHLWKMKVPNKVKI 292

Query: 61  FCWRLYHDFLPTVVNLQRRDVATS-------RETQTSSFGAIIRNGKGEVMLTVGRLVQF 120
           F WR+  + LPT  NL ++ V T         E   +   A++R+  G V++ V +    
Sbjct: 293 FAWRVCKNSLPTGANLMQKRVLTEDMYRLLFSELGRTYIVAVLRDASGRVLMAVSKAKTD 352

Query: 121 VQDVDSLEAMAIQESLLLEGEVGFTRLEVETDS 144
           +  + +LE MAI   L L   +G  +L +E+DS
Sbjct: 353 MDGIKALELMAILRRLQLCVTMGLPKLVIESDS 385

[Close]

BLAST of Lag0026608 vs. NCBI nr
Match: XP_037480834.1 (uncharacterized protein LOC119358354 [Triticum dicoccoides])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-10
Identity = 67/254 (26.38%), Postives = 101/254 (39.76%), Query Frame = 0


Query: 9   HSENDLYTVQSDYKLA-------NMLKEGA-NCSNLKLMRKWWKFLWGRQMPNKIKIFCW 68
           +++N +YTV+S Y L        N    G+ + SN  +M+K WK LW  Q P+K+KI  W
Sbjct: 122 YTKNGIYTVRSGYNLVRTNQFWINRSSVGSGSSSNQDVMQKLWKNLWRIQCPDKMKIVLW 181

Query: 69  RLYHDFLPTVVNLQRRDVAT------SRETQTS--------------------------- 128
           R+ H+ LPT   L +R +AT       RE Q S                           
Sbjct: 182 RIAHNCLPTGDQLHKRSIATRSAGSNRREHQVSIPKWSPPPAESVKVNVDAVIFAQTKRM 241

Query: 129 SFGAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDSARVA 188
             G +IRN  G V+      +  V + +  EA+A++ +L    + GF ++ VETD A + 
Sbjct: 242 GIGVVIRNHLGRVLAASRGFIHHVDNPELGEAIAMRHALFFAEDSGFQKILVETDCASLI 301

Query: 189 AMVQSNQRD----------------------FSKCRREANRVAHAAAKMVLERGVKGIWL 200
             ++S   D                      F+   R  N  AH  AK   E      W 
Sbjct: 302 NKIKSKMDDRSHTGAVIFDIKSRAPRFLSCCFTHVSRSCNEAAHVLAKSA-EHDEGSCWF 361

[Close]

BLAST of Lag0026608 vs. NCBI nr
Match: KAF4380736.1 (hypothetical protein F8388_017090 [Cannabis sativa] >KAF4393151.1 hypothetical protein G4B88_001885 [Cannabis sativa])

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-10
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 4   DKLVWH-SENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRL 63
           D + WH + N  Y+V S YKL  +    A CSNL  ++ WWKF+WG  +  K+K F WRL
Sbjct: 262 DWITWHPTPNGTYSVASGYKLRFINPATAECSNLSSIKAWWKFVWGSILTPKMKNFLWRL 321

Query: 64  YHDFLPTVVNLQRRDVA 80
           +H +LPT + L RR +A
Sbjct: 322 FHHWLPTKIELTRRGMA 338

[Close]

BLAST of Lag0026608 vs. NCBI nr
Match: KAF4347944.1 (hypothetical protein G4B88_014951 [Cannabis sativa])

HSP 1 Score: 75.9 bits (185), Expect = 4.9e-10
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 4   DKLVWHSE-NDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRL 63
           D + WHS  N +Y+V S YKL       A CSN   ++ WWKF+WG  + +K+K F WR+
Sbjct: 59  DWITWHSSPNGIYSVASGYKLRFTNPITAECSNKSSIKAWWKFVWGSILTSKMKNFLWRM 118

Query: 64  YHDFLPTVVNLQRRDVA 80
           +H +LPT + L RR +A
Sbjct: 119 FHHWLPTKIELTRRGMA 135

[Close]

BLAST of Lag0026608 vs. ExPASy TrEMBL
Match: A0A2N9IZ60 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57412 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-13
Identity = 71/274 (25.91%), Postives = 114/274 (41.61%), Query Frame = 0


Query: 3    QDKLVWHSEN-DLYTVQSDYKL--ANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFC 62
            +DKL+W  E   +Y+V+S Y+L    M      CS+  + +++WK +W  Q+P+K++ F 
Sbjct: 897  EDKLIWSREKCGIYSVRSAYRLLCEEMYANEPGCSDTGVWKQFWKKVWSVQVPHKLRQFL 956

Query: 63   WRLYHDFLPTVVNLQRRDVATSRETQTSSF------------------------------ 122
            WR   + LPT+VN+QRR +  S       F                              
Sbjct: 957  WRACTESLPTMVNMQRRCIVPSARCSFCHFEDEDVRHVLWSCPVLSSVWASHGFACKLFR 1016

Query: 123  ------------------GAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGE 182
                              G IIR+G+G  +  + +    +  VD  EA+A +E+L   GE
Sbjct: 1017 RRHFSFLDILSDLFVLGLGVIIRDGQGLPIAALCKRFMCLHSVDDAEAIAAREALQFVGE 1076

Query: 183  VGFTRLEVETDSARVAAMVQSNQRDF-----------------SKC-----RREANRVAH 203
            +G T  E E DS  +   ++S  + F                 S+C     + E N VAH
Sbjct: 1077 IGITDAEFEGDSLTICNALRSQDQSFASFGDIIDEACLLASSLSRCSFSHVKWEGNCVAH 1136

[Close]

BLAST of Lag0026608 vs. ExPASy TrEMBL
Match: A0A803QH76 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 4    DKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRL 63
            DK++W HS++  YTVQS Y LA  L    + S+    RKWW  LW  Q+P K+KIF WRL
Sbjct: 1333 DKIMWHHSDSGCYTVQSGYHLAVSLDSRDDHSSSSTNRKWWNRLWSLQLPKKVKIFAWRL 1392

Query: 64   YHDFLPTVVNLQRRDVATS 82
             +D LPT VNL  R +A+S
Sbjct: 1393 VNDALPTAVNLAHRKIASS 1411

[Close]

BLAST of Lag0026608 vs. ExPASy TrEMBL
Match: A0A2N9GSM5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33308 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 69/267 (25.84%), Postives = 111/267 (41.57%), Query Frame = 0


Query: 3    QDKLVWHSEN-DLYTVQSDYKL--ANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFC 62
            +DKL+W  E   +Y+V+S Y+L    M      CS+  + +++WK +W  Q+P+K++ F 
Sbjct: 897  EDKLIWSREKCGIYSVRSAYRLLCEEMYANEPGCSDTGVWKQFWKKVWSVQVPHKLRQFL 956

Query: 63   WRLYHDFLPTVVNLQRRDVATSRETQTSSF------------------------------ 122
            WR   + LPT+VN+QRR +  S       F                              
Sbjct: 957  WRACTESLPTMVNMQRRCIVPSARCSFCHFEDEDVRHVLWSCPVLSSVWASHGFACKLFR 1016

Query: 123  ------------------GAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGE 182
                              G IIR+G+G  +  + +    +  VD  EA+A +E+L   GE
Sbjct: 1017 RRHFSFLDILSDLFVLGLGVIIRDGQGLPIAALCKRFMCLHSVDDAEAIAAREALQFVGE 1076

Query: 183  VGFTRLEVETDSARVAAMVQSNQRDF-----------------SKC-----RREANRVAH 196
            +G T  E E DS  +   ++S  + F                 S+C     + E N VAH
Sbjct: 1077 IGITDAEFEGDSLTICNALRSQDQSFASFGDIIDEACLLASSLSRCSFSHVKWEGNCVAH 1136

[Close]

BLAST of Lag0026608 vs. ExPASy TrEMBL
Match: A0A803P623 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 2    SQDKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCW 61
            S D LVW H+ N +YTVQS Y LA+ L E  + S+     KWWK  W  Q+P KIKIF W
Sbjct: 1095 SNDCLVWHHTNNGIYTVQSGYHLASSLAEQPHSSSSSSESKWWKSFWSLQLPEKIKIFAW 1154

Query: 62   RLYHDFLPTVVNLQRRDVAT 81
            R+ HD LP   +L +R V T
Sbjct: 1155 RVIHDALPVATSLVKRKVIT 1174

[Close]

BLAST of Lag0026608 vs. ExPASy TrEMBL
Match: A0A803Q7D4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 3   QDKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWR 62
           +DKL+W HSEN  YTV+S Y LA  L++  + S    +R WW  LW   +P K+KIF WR
Sbjct: 769 EDKLIWHHSENGSYTVKSGYHLAENLEKMNDSSTSNTIRSWWNRLWALNLPKKVKIFSWR 828

Query: 63  LYHDFLPTVVNLQRRDVATS 82
           + +D LPT VNL  R ++ S
Sbjct: 829 VINDALPTAVNLMHRKISPS 848

The following BLAST results are available for this feature:

BLAST of Lag0026608 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030495196.1	3.0e-12	50.00	uncharacterized protein LOC115710989 [Cannabis sativa]	[more]
XP_041028005.1	8.9e-12	32.03	uncharacterized protein LOC121267980 [Juglans microcarpa x Juglans regia]	[more]
XP_037480834.1	1.3e-10	26.38	uncharacterized protein LOC119358354 [Triticum dicoccoides]	[more]
KAF4380736.1	2.9e-10	45.45	hypothetical protein F8388_017090 [Cannabis sativa] >KAF4393151.1 hypothetical p...	[more]
KAF4347944.1	4.9e-10	44.16	hypothetical protein G4B88_014951 [Cannabis sativa]	[more]

BLAST of Lag0026608 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0026608 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IZ60	3.0e-13	25.91	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57412 PE=4 SV=1	[more]
A0A803QH76	1.1e-12	50.63	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2N9GSM5	1.1e-12	25.84	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33308 PE=4 SV=1	[more]
A0A803P623	1.5e-12	50.00	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803Q7D4	1.5e-12	47.50	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lag0026608 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 15..82 e-value: 8.7E-9 score: 36.0
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 77..155 e-value: 1.6E-8 score: 34.4
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 77..173 e-value: 7.27952E-9 score: 50.3904

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026608.1	Lag0026608.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity