Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTTTCATTTAATCTGAATGGTGTGAAGCAGGGTCATATTATCCCAAGTCGAGGGCTACGACAAGGGGATCCATTATCTCCATACCTATTTTTACTCTGTGCAGAAGGTCTTTCCAGCTTATTACATGGGGCTATGTCACGGAAGCTCACGCCTGGCTTGGCCATTGCGAAACTTAGTCCCCCTATTTCCCACTTGTTCTTCACTGATGACAGCTTGCTACTTTTTATGGCTAAAAGGAGCGAGGTTTCGGCTATTAAGGGGATTTTAGATATGTATGATCATGCTTCTGGGCAATTGATAAATTTTGAGAAGTCAGCGTTGTCTGTTAGCCCAAATACTCCCACGGCTGTTCAAGGGGAGTTGGGGATCTTTTTGGTGTTCCTCCTCTTATGCAATGCCACAAGAAGTATTTGGGTCTCCCAACATTTATGCCTCGATCAAAAACTTCGACCTTGA
mRNA sequence
ATGACGTTTTCATTTAATCTGAATGGTGTGAAGCAGGGTCATATTATCCCAAGTCGAGGGCTACGACAAGGGGATCCATTATCTCCATACCTATTTTTACTCTGTGCAGAAGGTCTTTCCAGCTTATTACATGGGGCTATGTCACGGAAGCTCACGCCTGGCTTGGCCATTGCGAAACTTAGTCCCCCTATTTCCCACTTGTTCTTCACTGATGACAGCTTGCTACTTTTTATGGCTAAAAGGAGCGAGGTTTCGGCTATTAAGGGGATTTTAGATATGTATGATCATGCTTCTGGGCAATTGATAAATTTTGAGAAGTCAGCGTTGTCTGTTAGCCCAAATACTCCCACGGCTGTTCAAGGGGAGTTGGGGATCTTTTTGGTGTTCCTCCTCTTATGCAATGCCACAAGAAGTATTTGGGTCTCCCAACATTTATGCCTCGATCAAAAACTTCGACCTTGA
Coding sequence (CDS)
ATGACGTTTTCATTTAATCTGAATGGTGTGAAGCAGGGTCATATTATCCCAAGTCGAGGGCTACGACAAGGGGATCCATTATCTCCATACCTATTTTTACTCTGTGCAGAAGGTCTTTCCAGCTTATTACATGGGGCTATGTCACGGAAGCTCACGCCTGGCTTGGCCATTGCGAAACTTAGTCCCCCTATTTCCCACTTGTTCTTCACTGATGACAGCTTGCTACTTTTTATGGCTAAAAGGAGCGAGGTTTCGGCTATTAAGGGGATTTTAGATATGTATGATCATGCTTCTGGGCAATTGATAAATTTTGAGAAGTCAGCGTTGTCTGTTAGCCCAAATACTCCCACGGCTGTTCAAGGGGAGTTGGGGATCTTTTTGGTGTTCCTCCTCTTATGCAATGCCACAAGAAGTATTTGGGTCTCCCAACATTTATGCCTCGATCAAAAACTTCGACCTTGA
Protein sequence
MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQGELGIFLVFLLLCNATRSIWVSQHLCLDQKLRP
Homology
BLAST of Lag0026178 vs. NCBI nr
Match:
XP_027090317.1 (uncharacterized protein LOC113711350 [Coffea arabica])
HSP 1 Score: 146.0 bits (367), Expect = 2.7e-31
Identity = 68/123 (55.28%), Postives = 92/123 (74.80%), Query Frame = 0
Query: 1 MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
+++SFNLNG K G+I PSRG+RQGDPLSPYLF+LC EG S+L++ A+ RK G+ ++K
Sbjct: 493 VSYSFNLNGRKVGYIKPSRGIRQGDPLSPYLFILCTEGFSNLINKAVDRKELTGIKVSKD 552
Query: 61 SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
SP +SHLFF DDSLL A + EV IK +++ Y ASGQ++NFEKSA+ S NTP ++
Sbjct: 553 SPMVSHLFFADDSLLCCKASKKEVLKIKEVINHYGQASGQVVNFEKSAMFFSKNTPNRIR 612
Query: 121 GEL 124
E+
Sbjct: 613 KEV 615
BLAST of Lag0026178 vs. NCBI nr
Match:
XP_027171561.1 (uncharacterized protein LOC113771144 [Coffea eugenioides])
HSP 1 Score: 145.6 bits (366), Expect = 3.5e-31
Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 0
Query: 1 MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
+T+SFNLNG K G++ P+RG+RQGDPLSPYLF++CAEGLSSL+H A+ K G+ I +
Sbjct: 43 VTYSFNLNGQKVGNVTPTRGIRQGDPLSPYLFIICAEGLSSLIHKAVQGKELTGVKICRD 102
Query: 61 SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
SP ISHLFF DDSLL A R E +K IL Y +ASGQ++N+EKSAL S NT ++
Sbjct: 103 SPVISHLFFADDSLLCCKATRREALKVKSILTKYGNASGQVVNYEKSALFFSKNTKERME 162
Query: 121 GEL 124
E+
Sbjct: 163 QEI 165
BLAST of Lag0026178 vs. NCBI nr
Match:
XP_027157225.1 (uncharacterized protein LOC113758655 [Coffea eugenioides])
HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 0
Query: 1 MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
+++SFNLNG K GHI P+RG+RQGDPLSPYLF++CAEGLS LLH A+ + G+ I +
Sbjct: 18 VSYSFNLNGQKVGHIQPNRGIRQGDPLSPYLFIICAEGLSCLLHKAVIERELTGIKICRD 77
Query: 61 SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
SP ISHLFF DDSLL A + E +K IL+ Y ASGQ++NF+KSA+ S NT ++
Sbjct: 78 SPSISHLFFADDSLLCCKASKLEARKVKSILERYGKASGQVVNFDKSAIFYSKNTTEKIK 137
Query: 121 GEL 124
E+
Sbjct: 138 EEV 140
BLAST of Lag0026178 vs. NCBI nr
Match:
XP_027154988.1 (uncharacterized protein LOC113755115 [Coffea eugenioides])
HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 0
Query: 1 MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
+++SFNLNG K GHI P+RG+RQGDPLSPYLF++CAEGLS LLH A+ + G+ I +
Sbjct: 249 VSYSFNLNGQKVGHIQPNRGIRQGDPLSPYLFIICAEGLSCLLHKAVIERELTGIKICRD 308
Query: 61 SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
SP ISHLFF DDSLL A + E +K IL+ Y ASGQ++NF+KSA+ S NT ++
Sbjct: 309 SPSISHLFFADDSLLCCKASKLEARKVKSILERYGKASGQVVNFDKSAIFYSKNTTEKIK 368
Query: 121 GEL 124
E+
Sbjct: 369 EEV 371
BLAST of Lag0026178 vs. NCBI nr
Match:
XP_027120381.1 (uncharacterized protein LOC113737334 [Coffea arabica])
HSP 1 Score: 141.4 bits (355), Expect = 6.7e-30
Identity = 64/123 (52.03%), Postives = 89/123 (72.36%), Query Frame = 0
Query: 1 MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
+ +SFNLNG K G + PSRG+RQGDPLSPYLF++C EGLS+L+ A+ K G+ I +
Sbjct: 483 VAYSFNLNGQKVGRVKPSRGIRQGDPLSPYLFIICTEGLSNLIKKAVDNKHLTGIKICRD 542
Query: 61 SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
SP +SHLFF DDSLL A + E +K +L +Y ASGQ++NF+KSA+ +S N+P ++
Sbjct: 543 SPMVSHLFFADDSLLCCKASKKEAQKLKEVLRIYGQASGQVVNFDKSAMFLSRNSPKRIR 602
Query: 121 GEL 124
GE+
Sbjct: 603 GEV 605
BLAST of Lag0026178 vs. ExPASy Swiss-Prot
Match:
P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 0
Query: 5 FNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPI 64
F +NG QG + PSRGLRQGDPLSPYLF+LC E LS L A + PG+ ++ SP I
Sbjct: 12 FIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRI 71
Query: 65 SHLFFTDDS 74
+HL F DD+
Sbjct: 72 NHLLFADDT 80
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| P92555 | 2.8e-15 | 55.07 | Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ... | [more] |
