|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTATCGGGAAGTCGTCGTCGTCGCTCCAGTAAGTCCTCTTCTCCTTTTTTCCCTCGACACCCACGATTTTTTTTTCTCATCCTTGTTTTTTTTCTCCTTCCTCTCTTTTCTCTCGACAAACCATCTCACTCTTCATCTCTCTTCTCCTTCCGCTCTGTATCTACCATGTGTTTTTGCTGAAAATCTCCTAATCTCTGTAATTTCAAAGCCGTAAAAAAGTAAGTTACACCGTTCTATAGTTTTCATATTTTTTTTGTTCTCCTTATACTTTCACTTCTCGTTTTCATGTTTTTGTTGACCACGAGGGCTTCACTAGGGTTTTGGGTTTTGGTTCGATCATGGTTTTAGGTCTTCTTTTATGAACACTGATTAAGTAGAACTGGTTTTCTGTGAATTTTGTGGGAGACTTATCTTTAATCTTCTAGTTCTAGTTCATTGGTAATCGTAGTTGGGAATCAATTTAATTCACCTAAAAATTTGAGCATTTGGGTTAATTTGTTACTGGTCCTGCATTGAAAAATGTTTAAGATTTGTGATTCACTTTAATTTCTTTTATTTATATTTTGGTTGTTTGGTTTGGTTGACGCAGAATGGTATTCTCCAACTTGTTTTTAGGTTTACATTGTGTTAAACCCCACTTCAGTTCCTCTTATCGCCACTTCCATGGCTCTGTCCTCGTAATCGACGCTACCCCAATAAGGTTGCCTCTTAATCCTTTACTCTGCCCCCAAAATTTCGAGGTTATGTTCTTAATTGTGTTCATGATTGAAAAATTGAATTCTTCTATGTTGGGTTTTGCCTTTTTGAGTTCTTTCTGTCGATAAATATCATTTGCTCTCAAGGAACCAAAAAGGAGATCCAAACTCTTTAATTTGTTTGCAAATCTATCATATGGGTTAAACAATTCTTGTGCATAGTTTATTATTGGTTCGAAGTAAAGGCTGAATGTTGTTTTGTGATTTTTTCCTGAAATGTCGGTTTGATATGTAAGCAACCAAAACTAGTCTACACGCTCGTTCATAATTGCATCATTTAAGTTTCGTGTGCAGTTTTTTGTTGGCAAATGTTTTTGAAGAAGCAAGTTGTTGGAATCAAGTCCAATGTAATGACAAGCTTGTGACTTAATATTTTGCAAGCACCCTTAAGCTTCCTCAAAATTTTATTTGCTTGTGGTTGTTCTCTGATTGAACGTTGTTTATTGAACTTTAGAAACTTGATATTAATTTACAAAATGATTTGGAGTTAAGGTAGAATTTGTGCTTTCCTTCAACAATTTTAGCATAAACTCACTCTTGTGAAGTAATGTTTTGTTGTTTTGCATGGTTACTTTGTTTAATTTATAGATTACTCTGTTCATAGTTTCCATGGAAGACAATCCTATATCCTCTCTCGTGTGGATGCTTGCTCATATTGCAGTTTAATTCTAGGTGGAATTTTTGTAAGTTTATGTGAACTGATCTTCTTTTGTTTTACATATTTTCCACGTTACAGTTTTAAAGGTGAATCTCACCAATTCATATGTTGCATCAAACTTATTTTATCAAGTACAAACATAGTTATGTTCAATTATTTGTTCATTGTTATGGTATTGTGTTCTATTTCTGAGATTTGAATTACCAAATGTGCCATTGCCAGAGTTATGTTTCTAAGACTGACATAATTCATGTTTAGTTTGAGATTGGTGGTTGAAGGTGGTGTAAGACAACCTTACTTGAACATAATCTTACTTGAATATGATCTGTTATATAAAGGTTGTACAACTATGCCCTTAAGTTCTAAGGATGAAGGTGGTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAGTTAATGATGTTAAAATGTCTTTCGACTCATATCGGTCTCTTGGGTTTCAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAACAACTAATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGGTGCAGTGTTCTTCCTATTGACCTTATAATTGAAGTTGAGTTAATTGAGTTTTTGACAATTTTTTTTTTGTGTAATAGATCCTTCAAGAAGATATTGGAGGTGTAAACGACCATTTTTGACCCATTAATGCTTTGTCTTTCAATCCTAATGGCAAGAGGTATGTTTATGGTTTATTGCACTGTTTGCATATGAAAACAAAGAAACAACACAATCAAAGAAACCATAGTATTGGATGGTAATTGAGATTCTTTATAGATATGGTTTTGTTGTAGTTTTTAAATTAGAGGTGAAAATGGTTATGTAAGACAACATCATTTTGACCCCGATTACTTCAACATCAAGATTTAAAAGATAAGTTATTTTTAGAAAGAATATAGGACAAGTGCAACTTTTTTTAGAAAGAAACTGTTATAGAGACTTTTAAAAGATAAGTTATTTTTAAAATCAATTAAAGATAAATGTTGAATTGGAAATTTTGGAGTGACATTGAGTCCTGCTGAACCTATGGAAAATAAAGGGAAAAAGATTGGGAACCCTTGAGTTCCTCGCTACATTTGCTCTTTCTTGGACTTGGAGTTCAATCTTCAATCCCCTCTTTTGATTTGACTTTGTTTTACGGTTGATTGGAGGATGATTGTTTTGAATCGATTTGAAAGGCGAGGTACGCATTGATCATTTTCTCATTGTTATCTTTGTTATATTTTTAATTTATATCATCTGAATCGTGCAAATGGTGATCTCTTTGTTTTTCAATATCTTTGTTTCCTGTTTTCTGCTTGGATGCATCGATTCTGCGGTACCTCAAAGAAAGAAACTGGAATACAAAGAAGGCCAATAAAATGTTGAAGGAAGCTTTGAAATGGAGGCTAGAATACAAGTCAGAGAAGATAAGAATCAGGGGTGAGCAAAAACCATCGAAAAACCGATTCGACCGATCGAAACCGATCGAACCGATGTCGGTCGGTCGGTTTTAGAGTATATTCGGTCGGTGTCGACCATTTGGTCGGTCGGCGAGCCCAAGAAGGCTAAAGCTGACCAAACCGACCGACTGCACATAATTAAATTTTTTTTTTGAAAATTTACCACCCTCCCAGCGGTTTCAAAAGATGAAATCAGCTGAAAACCAGCAGTTGATATTTAGGTAATGATTACCTATATTCTTTTTTTTTTTTTTTTTTTAATTGCACCGTTTTTCTTCCGTTTCCCATTTTCCCATTTCCTATTTTCATTTCTGTTATGCTCTCCCTTCTCTCCTTCCCATCTTTTCTTTTCTTTTCTTTTCTTTTCTACATCTTTTTCTTTTTACCCAGAACCACCGTCGGCTCGTCTGCTTCGCCGCCGCCAAAGTTCTTCCATTTTCTTCCTTCTTTTCTTCTTTTATCATATCTGCCACCTCTTTCATGTAAGTTATTTCTTTTCTCCTTTCTTTTCTCCTTTCTTTTCTTCTTTGAATCATAATCGCCGCCTCTTTTTTGTTTCCTCCTTCATCCTCCTCTCTTTTTGTTTCTCTTTCTCGCCTTCTCTCTTTCTCTTTGAACTTTTTTCACCTCCGGAGCCCAAATCGCGAAACTAACGATACTTTTCTCAAGAATCTCGAAACCGACCGAAATCGACCAATATATTCGATCGATCGTTTCCTTAATAACCCAAAAACCGACAACAACCGACCGATTAAAACCGATTGGTCGGTGGTCAGCGTCGGTTTGAGCCCAAAACCGATGCCGACCGACCGATGATGACCCCTAGATAAGATGGGTATGGTTTTATATGCAAACTTCACCATTTAATTAGCACCATTCTAAACTTTAATCTCTCTGGAAAATGTGGCTAATTTTGGGCAGTGGACCAGTGGTAATCGAGAATGTGGTTGCTACTTTTGATGGGGAGCGCCACATTCTTATAAGGTGCACCATTTATTGTGCTTTACTTTGA mRNA sequence ATGCTATCGGGAAGTCGTCGTCGTCGCTCCAGTTTACATTGTGTTAAACCCCACTTCAGTTCCTCTTATCGCCACTTCCATGGCTCTGTCCTCGTAATCGACGCTACCCCAATAAGGTTGCCTCTTAATCCTTTACTCTGCCCCCAAAATTTCGAGAAACTTGATATTAATTTACAAAATGATTTGGAGTTAAGTTTGAGATTGGTGGTTGAAGGTGGTGTAAGACAACCTTACTTGAACATAATCTTACTTGAATATGATCTGTTATATAAAGGTTGTACAACTATGCCCTTAAGTTCTAAGGATGAAGGTGGTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAGTTAATGATGTTAAAATGTCTTTCGACTCATATCGGTCTCTTGGGTTTCAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAACAACTAATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGAACCACCGTCGGCTCGTCTGCTTCGCCGCCGCCAAAGTTCTTCCATTTTCTTCCTTCTTTTCTTCTTTTATCATATCTGCCACCTCTTTCATTGGACCAGTGGTAATCGAGAATGTGGTTGCTACTTTTGATGGGGAGCGCCACATTCTTATAAGGTGCACCATTTATTGTGCTTTACTTTGA Coding sequence (CDS) ATGCTATCGGGAAGTCGTCGTCGTCGCTCCAGTTTACATTGTGTTAAACCCCACTTCAGTTCCTCTTATCGCCACTTCCATGGCTCTGTCCTCGTAATCGACGCTACCCCAATAAGGTTGCCTCTTAATCCTTTACTCTGCCCCCAAAATTTCGAGAAACTTGATATTAATTTACAAAATGATTTGGAGTTAAGTTTGAGATTGGTGGTTGAAGGTGGTGTAAGACAACCTTACTTGAACATAATCTTACTTGAATATGATCTGTTATATAAAGGTTGTACAACTATGCCCTTAAGTTCTAAGGATGAAGGTGGTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAGTTAATGATGTTAAAATGTCTTTCGACTCATATCGGTCTCTTGGGTTTCAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAACAACTAATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGAACCACCGTCGGCTCGTCTGCTTCGCCGCCGCCAAAGTTCTTCCATTTTCTTCCTTCTTTTCTTCTTTTATCATATCTGCCACCTCTTTCATTGGACCAGTGGTAATCGAGAATGTGGTTGCTACTTTTGATGGGGAGCGCCACATTCTTATAAGGTGCACCATTTATTGTGCTTTACTTTGA Protein sequence MLSGSRRRRSSLHCVKPHFSSSYRHFHGSVLVIDATPIRLPLNPLLCPQNFEKLDINLQNDLELSLRLVVEGGVRQPYLNIILLEYDLLYKGCTTMPLSSKDEGGVGVDSLMLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAVTTNHRVGKFEAKFYHKNHRRLVCFAAAKVLPFSSFFSSFIISATSFIGPVVIENVVATFDGERHILIRCTIYCALL
Homology
BLAST of Lag0026169 vs. ExPASy Swiss-Prot
Match: Q38884 (Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=3702 GN=TIF3I1 PE=2 SV=2) HSP 1 Score: 49.7 bits (117), Expect = 5.0e-05 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
Query: 134 VVLGGGQDASAV-TTNHRVGKFEAKFYHK 162
VVLGGGQDASAV TT+HR GKFEAKFY K
Sbjct: 249 VVLGGGQDASAVTTTDHRAGKFEAKFYDK 277
BLAST of Lag0026169 vs. ExPASy Swiss-Prot
Match: Q6CI08 (Eukaryotic translation initiation factor 3 subunit I OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF34 PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 1.1e-04 Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 0
Query: 99 SSKDEGG--VGVDSL-MLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAV-TTNHRVGKF 158
SSKD+ VDSL +L D M+ S V+LGGGQDA V TT+ R GKF
Sbjct: 211 SSKDKTARLTDVDSLKLLKTYKTDTSMNSACITSKKDFVILGGGQDAKDVTTTSSRDGKF 270
Query: 159 EAKFYHK 162
EA+FYHK
Sbjct: 271 EARFYHK 277
BLAST of Lag0026169 vs. ExPASy TrEMBL
Match: A0A2N9H302 (Eukaryotic translation initiation factor 3 subunit I OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33903 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04 Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0
Query: 112 MLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAV-TTNHRVGKFEAKFYHK 162
ML C D+ FD LG +VVLGGGQDASAV TT+HR GKFEAKF+ K
Sbjct: 256 MLSC---DLNAIFD----LGMRVVLGGGQDASAVTTTDHRAGKFEAKFFDK 299
BLAST of Lag0026169 vs. TAIR 10
Match: AT2G46280.1 (TGF-beta receptor interacting protein 1 ) HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
Query: 134 VVLGGGQDASAV-TTNHRVGKFEAKFYHK 162
VVLGGGQDASAV TT+HR GKFEAKFY K
Sbjct: 249 VVLGGGQDASAVTTTDHRAGKFEAKFYDK 277
BLAST of Lag0026169 vs. TAIR 10
Match: AT2G46280.2 (TGF-beta receptor interacting protein 1 ) HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
Query: 134 VVLGGGQDASAV-TTNHRVGKFEAKFYHK 162
VVLGGGQDASAV TT+HR GKFEAKFY K
Sbjct: 249 VVLGGGQDASAVTTTDHRAGKFEAKFYDK 277
BLAST of Lag0026169 vs. TAIR 10
Match: AT2G46290.1 (Transducin/WD40 repeat-like superfamily protein ) HSP 1 Score: 48.1 bits (113), Expect = 1.0e-05 Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0
Query: 134 VVLGGGQDASAV-TTNHRVGKFEAKFY 160
VVLGGGQDASAV TT+HR GKFEAKFY
Sbjct: 276 VVLGGGQDASAVTTTDHRAGKFEAKFY 302
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Q38884 | 5.0e-05 | 86.21 | Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=... | [more] |
| Q6CI08 | 1.1e-04 | 49.25 | Eukaryotic translation initiation factor 3 subunit I OS=Yarrowia lipolytica (str... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A2N9H302 | 5.7e-04 | 62.75 | Eukaryotic translation initiation factor 3 subunit I OS=Fagus sylvatica OX=28930... | [more] |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0002183 |
cytoplasmic translational initiation |
| cellular_component |
GO:0005852 |
eukaryotic translation initiation factor 3 complex |
| molecular_function |
GO:0003723 |
RNA binding |
|
