Lag0026169 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026169
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionEukaryotic translation initiation factor 3 subunit I
Locationchr10: 31242107 .. 31246002 (-)
RNA-Seq ExpressionLag0026169
SyntenyLag0026169
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATCGGGAAGTCGTCGTCGTCGCTCCAGTAAGTCCTCTTCTCCTTTTTTCCCTCGACACCCACGATTTTTTTTTCTCATCCTTGTTTTTTTTCTCCTTCCTCTCTTTTCTCTCGACAAACCATCTCACTCTTCATCTCTCTTCTCCTTCCGCTCTGTATCTACCATGTGTTTTTGCTGAAAATCTCCTAATCTCTGTAATTTCAAAGCCGTAAAAAAGTAAGTTACACCGTTCTATAGTTTTCATATTTTTTTTGTTCTCCTTATACTTTCACTTCTCGTTTTCATGTTTTTGTTGACCACGAGGGCTTCACTAGGGTTTTGGGTTTTGGTTCGATCATGGTTTTAGGTCTTCTTTTATGAACACTGATTAAGTAGAACTGGTTTTCTGTGAATTTTGTGGGAGACTTATCTTTAATCTTCTAGTTCTAGTTCATTGGTAATCGTAGTTGGGAATCAATTTAATTCACCTAAAAATTTGAGCATTTGGGTTAATTTGTTACTGGTCCTGCATTGAAAAATGTTTAAGATTTGTGATTCACTTTAATTTCTTTTATTTATATTTTGGTTGTTTGGTTTGGTTGACGCAGAATGGTATTCTCCAACTTGTTTTTAGGTTTACATTGTGTTAAACCCCACTTCAGTTCCTCTTATCGCCACTTCCATGGCTCTGTCCTCGTAATCGACGCTACCCCAATAAGGTTGCCTCTTAATCCTTTACTCTGCCCCCAAAATTTCGAGGTTATGTTCTTAATTGTGTTCATGATTGAAAAATTGAATTCTTCTATGTTGGGTTTTGCCTTTTTGAGTTCTTTCTGTCGATAAATATCATTTGCTCTCAAGGAACCAAAAAGGAGATCCAAACTCTTTAATTTGTTTGCAAATCTATCATATGGGTTAAACAATTCTTGTGCATAGTTTATTATTGGTTCGAAGTAAAGGCTGAATGTTGTTTTGTGATTTTTTCCTGAAATGTCGGTTTGATATGTAAGCAACCAAAACTAGTCTACACGCTCGTTCATAATTGCATCATTTAAGTTTCGTGTGCAGTTTTTTGTTGGCAAATGTTTTTGAAGAAGCAAGTTGTTGGAATCAAGTCCAATGTAATGACAAGCTTGTGACTTAATATTTTGCAAGCACCCTTAAGCTTCCTCAAAATTTTATTTGCTTGTGGTTGTTCTCTGATTGAACGTTGTTTATTGAACTTTAGAAACTTGATATTAATTTACAAAATGATTTGGAGTTAAGGTAGAATTTGTGCTTTCCTTCAACAATTTTAGCATAAACTCACTCTTGTGAAGTAATGTTTTGTTGTTTTGCATGGTTACTTTGTTTAATTTATAGATTACTCTGTTCATAGTTTCCATGGAAGACAATCCTATATCCTCTCTCGTGTGGATGCTTGCTCATATTGCAGTTTAATTCTAGGTGGAATTTTTGTAAGTTTATGTGAACTGATCTTCTTTTGTTTTACATATTTTCCACGTTACAGTTTTAAAGGTGAATCTCACCAATTCATATGTTGCATCAAACTTATTTTATCAAGTACAAACATAGTTATGTTCAATTATTTGTTCATTGTTATGGTATTGTGTTCTATTTCTGAGATTTGAATTACCAAATGTGCCATTGCCAGAGTTATGTTTCTAAGACTGACATAATTCATGTTTAGTTTGAGATTGGTGGTTGAAGGTGGTGTAAGACAACCTTACTTGAACATAATCTTACTTGAATATGATCTGTTATATAAAGGTTGTACAACTATGCCCTTAAGTTCTAAGGATGAAGGTGGTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAGTTAATGATGTTAAAATGTCTTTCGACTCATATCGGTCTCTTGGGTTTCAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAACAACTAATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGGTGCAGTGTTCTTCCTATTGACCTTATAATTGAAGTTGAGTTAATTGAGTTTTTGACAATTTTTTTTTTGTGTAATAGATCCTTCAAGAAGATATTGGAGGTGTAAACGACCATTTTTGACCCATTAATGCTTTGTCTTTCAATCCTAATGGCAAGAGGTATGTTTATGGTTTATTGCACTGTTTGCATATGAAAACAAAGAAACAACACAATCAAAGAAACCATAGTATTGGATGGTAATTGAGATTCTTTATAGATATGGTTTTGTTGTAGTTTTTAAATTAGAGGTGAAAATGGTTATGTAAGACAACATCATTTTGACCCCGATTACTTCAACATCAAGATTTAAAAGATAAGTTATTTTTAGAAAGAATATAGGACAAGTGCAACTTTTTTTAGAAAGAAACTGTTATAGAGACTTTTAAAAGATAAGTTATTTTTAAAATCAATTAAAGATAAATGTTGAATTGGAAATTTTGGAGTGACATTGAGTCCTGCTGAACCTATGGAAAATAAAGGGAAAAAGATTGGGAACCCTTGAGTTCCTCGCTACATTTGCTCTTTCTTGGACTTGGAGTTCAATCTTCAATCCCCTCTTTTGATTTGACTTTGTTTTACGGTTGATTGGAGGATGATTGTTTTGAATCGATTTGAAAGGCGAGGTACGCATTGATCATTTTCTCATTGTTATCTTTGTTATATTTTTAATTTATATCATCTGAATCGTGCAAATGGTGATCTCTTTGTTTTTCAATATCTTTGTTTCCTGTTTTCTGCTTGGATGCATCGATTCTGCGGTACCTCAAAGAAAGAAACTGGAATACAAAGAAGGCCAATAAAATGTTGAAGGAAGCTTTGAAATGGAGGCTAGAATACAAGTCAGAGAAGATAAGAATCAGGGGTGAGCAAAAACCATCGAAAAACCGATTCGACCGATCGAAACCGATCGAACCGATGTCGGTCGGTCGGTTTTAGAGTATATTCGGTCGGTGTCGACCATTTGGTCGGTCGGCGAGCCCAAGAAGGCTAAAGCTGACCAAACCGACCGACTGCACATAATTAAATTTTTTTTTTGAAAATTTACCACCCTCCCAGCGGTTTCAAAAGATGAAATCAGCTGAAAACCAGCAGTTGATATTTAGGTAATGATTACCTATATTCTTTTTTTTTTTTTTTTTTTAATTGCACCGTTTTTCTTCCGTTTCCCATTTTCCCATTTCCTATTTTCATTTCTGTTATGCTCTCCCTTCTCTCCTTCCCATCTTTTCTTTTCTTTTCTTTTCTTTTCTACATCTTTTTCTTTTTACCCAGAACCACCGTCGGCTCGTCTGCTTCGCCGCCGCCAAAGTTCTTCCATTTTCTTCCTTCTTTTCTTCTTTTATCATATCTGCCACCTCTTTCATGTAAGTTATTTCTTTTCTCCTTTCTTTTCTCCTTTCTTTTCTTCTTTGAATCATAATCGCCGCCTCTTTTTTGTTTCCTCCTTCATCCTCCTCTCTTTTTGTTTCTCTTTCTCGCCTTCTCTCTTTCTCTTTGAACTTTTTTCACCTCCGGAGCCCAAATCGCGAAACTAACGATACTTTTCTCAAGAATCTCGAAACCGACCGAAATCGACCAATATATTCGATCGATCGTTTCCTTAATAACCCAAAAACCGACAACAACCGACCGATTAAAACCGATTGGTCGGTGGTCAGCGTCGGTTTGAGCCCAAAACCGATGCCGACCGACCGATGATGACCCCTAGATAAGATGGGTATGGTTTTATATGCAAACTTCACCATTTAATTAGCACCATTCTAAACTTTAATCTCTCTGGAAAATGTGGCTAATTTTGGGCAGTGGACCAGTGGTAATCGAGAATGTGGTTGCTACTTTTGATGGGGAGCGCCACATTCTTATAAGGTGCACCATTTATTGTGCTTTACTTTGA

mRNA sequence

ATGCTATCGGGAAGTCGTCGTCGTCGCTCCAGTTTACATTGTGTTAAACCCCACTTCAGTTCCTCTTATCGCCACTTCCATGGCTCTGTCCTCGTAATCGACGCTACCCCAATAAGGTTGCCTCTTAATCCTTTACTCTGCCCCCAAAATTTCGAGAAACTTGATATTAATTTACAAAATGATTTGGAGTTAAGTTTGAGATTGGTGGTTGAAGGTGGTGTAAGACAACCTTACTTGAACATAATCTTACTTGAATATGATCTGTTATATAAAGGTTGTACAACTATGCCCTTAAGTTCTAAGGATGAAGGTGGTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAGTTAATGATGTTAAAATGTCTTTCGACTCATATCGGTCTCTTGGGTTTCAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAACAACTAATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGAACCACCGTCGGCTCGTCTGCTTCGCCGCCGCCAAAGTTCTTCCATTTTCTTCCTTCTTTTCTTCTTTTATCATATCTGCCACCTCTTTCATTGGACCAGTGGTAATCGAGAATGTGGTTGCTACTTTTGATGGGGAGCGCCACATTCTTATAAGGTGCACCATTTATTGTGCTTTACTTTGA

Coding sequence (CDS)

ATGCTATCGGGAAGTCGTCGTCGTCGCTCCAGTTTACATTGTGTTAAACCCCACTTCAGTTCCTCTTATCGCCACTTCCATGGCTCTGTCCTCGTAATCGACGCTACCCCAATAAGGTTGCCTCTTAATCCTTTACTCTGCCCCCAAAATTTCGAGAAACTTGATATTAATTTACAAAATGATTTGGAGTTAAGTTTGAGATTGGTGGTTGAAGGTGGTGTAAGACAACCTTACTTGAACATAATCTTACTTGAATATGATCTGTTATATAAAGGTTGTACAACTATGCCCTTAAGTTCTAAGGATGAAGGTGGTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAGTTAATGATGTTAAAATGTCTTTCGACTCATATCGGTCTCTTGGGTTTCAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAACAACTAATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGAACCACCGTCGGCTCGTCTGCTTCGCCGCCGCCAAAGTTCTTCCATTTTCTTCCTTCTTTTCTTCTTTTATCATATCTGCCACCTCTTTCATTGGACCAGTGGTAATCGAGAATGTGGTTGCTACTTTTGATGGGGAGCGCCACATTCTTATAAGGTGCACCATTTATTGTGCTTTACTTTGA

Protein sequence

MLSGSRRRRSSLHCVKPHFSSSYRHFHGSVLVIDATPIRLPLNPLLCPQNFEKLDINLQNDLELSLRLVVEGGVRQPYLNIILLEYDLLYKGCTTMPLSSKDEGGVGVDSLMLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAVTTNHRVGKFEAKFYHKNHRRLVCFAAAKVLPFSSFFSSFIISATSFIGPVVIENVVATFDGERHILIRCTIYCALL
Homology
[Close]
BLAST of Lag0026169 vs. ExPASy Swiss-Prot
Match: Q38884 (Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=3702 GN=TIF3I1 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 5.0e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 134 VVLGGGQDASAV-TTNHRVGKFEAKFYHK 162
           VVLGGGQDASAV TT+HR GKFEAKFY K
Sbjct: 249 VVLGGGQDASAVTTTDHRAGKFEAKFYDK 277

[Close]
BLAST of Lag0026169 vs. ExPASy Swiss-Prot
Match: Q6CI08 (Eukaryotic translation initiation factor 3 subunit I OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF34 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-04
Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 99  SSKDEGG--VGVDSL-MLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAV-TTNHRVGKF 158
           SSKD+      VDSL +L     D  M+     S    V+LGGGQDA  V TT+ R GKF
Sbjct: 211 SSKDKTARLTDVDSLKLLKTYKTDTSMNSACITSKKDFVILGGGQDAKDVTTTSSRDGKF 270

Query: 159 EAKFYHK 162
           EA+FYHK
Sbjct: 271 EARFYHK 277

[Close]
BLAST of Lag0026169 vs. ExPASy TrEMBL
Match: A0A2N9H302 (Eukaryotic translation initiation factor 3 subunit I OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33903 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 112 MLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAV-TTNHRVGKFEAKFYHK 162
           ML C   D+   FD    LG +VVLGGGQDASAV TT+HR GKFEAKF+ K
Sbjct: 256 MLSC---DLNAIFD----LGMRVVLGGGQDASAVTTTDHRAGKFEAKFFDK 299

[Close]
BLAST of Lag0026169 vs. TAIR 10
Match: AT2G46280.1 (TGF-beta receptor interacting protein 1 )

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 134 VVLGGGQDASAV-TTNHRVGKFEAKFYHK 162
           VVLGGGQDASAV TT+HR GKFEAKFY K
Sbjct: 249 VVLGGGQDASAVTTTDHRAGKFEAKFYDK 277

[Close]
BLAST of Lag0026169 vs. TAIR 10
Match: AT2G46280.2 (TGF-beta receptor interacting protein 1 )

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 134 VVLGGGQDASAV-TTNHRVGKFEAKFYHK 162
           VVLGGGQDASAV TT+HR GKFEAKFY K
Sbjct: 249 VVLGGGQDASAVTTTDHRAGKFEAKFYDK 277

[Close]
BLAST of Lag0026169 vs. TAIR 10
Match: AT2G46290.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-05
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 134 VVLGGGQDASAV-TTNHRVGKFEAKFY 160
           VVLGGGQDASAV TT+HR GKFEAKFY
Sbjct: 276 VVLGGGQDASAVTTTDHRAGKFEAKFY 302

The following BLAST results are available for this feature:
BLAST of Lag0026169 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0026169 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q388845.0e-0586.21Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=... [more]
Q6CI081.1e-0449.25Eukaryotic translation initiation factor 3 subunit I OS=Yarrowia lipolytica (str... [more]
BLAST of Lag0026169 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9H3025.7e-0462.75Eukaryotic translation initiation factor 3 subunit I OS=Fagus sylvatica OX=28930... [more]
BLAST of Lag0026169 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G46280.13.6e-0686.21TGF-beta receptor interacting protein 1 [more]
AT2G46280.23.6e-0686.21TGF-beta receptor interacting protein 1 [more]
AT2G46290.11.0e-0588.89Transducin/WD40 repeat-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026169.1Lag0026169.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002183 cytoplasmic translational initiation
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0003723 RNA binding