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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAGATTATAAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAACAGAGCAGGAGCACTGCCAGAGTTCGTAAGTAGAGTCATTTCCCAGTACAAGTGGCAAGAGTTCTGTGCTCACCCTCAAGAGGCTATAGTGCCTTTAGTTCGAGAATTTTACGCTGGCCTAAGGGAGGAAAGCATTAGTATGGCGGTGGTGAGAGGCAAGATGGTTAGCTTCTCTTCAGAGGATATTAATCCGGTGTACAGGATCAAGGCACCCCTGAATCCAAGAGGGAACGATGTTATCAGGAACCCCTCGGCCAAGCAAATGAAGGAAGCATTGAAACTTGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCCCAAACAAAAGTGAAGACTCTAGTGCCAAGCGATTTAAAGCCAAAATCGGCAGTTTGA mRNA sequence ATGAAGATTATAAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAACAGAGCAGGAGCACTGCCAGAGTTCGTAAGTAGAGTCATTTCCCAGTACAAGTGGCAAGAGTTCTGTGCTCACCCTCAAGAGGCTATAGTGCCTTTAGTTCGAGAATTTTACGCTGGCCTAAGGGAGGAAAGCATTAGTATGGCGGTGGTGAGAGGCAAGATGGTTAGCTTCTCTTCAGAGGATATTAATCCGGTGTACAGGATCAAGGCACCCCTGAATCCAAGAGGGAACGATGTTATCAGGAACCCCTCGGCCAAGCAAATGAAGGAAGCATTGAAACTTGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCCCAAACAAAAGTGAAGACTCTAGTGCCAAGCGATTTAAAGCCAAAATCGGCAGTTTGA Coding sequence (CDS) ATGAAGATTATAAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAACAGAGCAGGAGCACTGCCAGAGTTCGTAAGTAGAGTCATTTCCCAGTACAAGTGGCAAGAGTTCTGTGCTCACCCTCAAGAGGCTATAGTGCCTTTAGTTCGAGAATTTTACGCTGGCCTAAGGGAGGAAAGCATTAGTATGGCGGTGGTGAGAGGCAAGATGGTTAGCTTCTCTTCAGAGGATATTAATCCGGTGTACAGGATCAAGGCACCCCTGAATCCAAGAGGGAACGATGTTATCAGGAACCCCTCGGCCAAGCAAATGAAGGAAGCATTGAAACTTGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCCCAAACAAAAGTGAAGACTCTAGTGCCAAGCGATTTAAAGCCAAAATCGGCAGTTTGA Protein sequence MKIIRKRDFLNEKGFSNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLREESISMAVVRGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKPKSAV
Homology
BLAST of Lag0026142 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]) HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15 Identity = 55/141 (39.01%), Postives = 82/141 (58.16%), Query Frame = 0
Query: 4 IRKRDFLNEKGF----SNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLRE 63
I+ R EKGF S G LP F+++VI+Q+ W++FCAHP++ IVPLVREFYA L +
Sbjct: 38 IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 97
Query: 64 ESISMAVVRGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQW 123
+ VRG VS+S E IN V+ + P++ ++ I+N + + + L+ VA G +W
Sbjct: 98 PEENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEW 157
Query: 124 KESQTKVKTLVPSDLKPKSAV 141
S T + S L P + V
Sbjct: 158 NVSAQGAYTCIRSALTPAAKV 176
BLAST of Lag0026142 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]) HSP 1 Score: 91.3 bits (225), Expect = 7.2e-15 Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = 0
Query: 4 IRKRDFLNEKGF----SNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLRE 63
I+ R EKGF S G LP F+++VI+Q+ W++FCAHP++ IVPLVREFYA L +
Sbjct: 29 IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 88
Query: 64 ESISMAVVRGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQW 123
+ VRG VS+S E IN V+ + P++ ++ I N + + L+ VA G +W
Sbjct: 89 PVENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SEFIENITEHDLITVLETVAVAGAEW 148
Query: 124 KESQTKVKTLVPSDLKPKSAV 141
S T + S L P + V
Sbjct: 149 NVSAQGAYTCIRSALTPAAKV 167
BLAST of Lag0026142 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii]) HSP 1 Score: 82.4 bits (202), Expect = 3.4e-12 Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 0
Query: 4 IRKRDFLNEKGF---SNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLREE 63
I+ R EKGF +++ P F++ VI+Q+ WQ FCAHP++ IVPLVREFYA +
Sbjct: 29 IQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANMTNP 88
Query: 64 SISMAVVRGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWK 123
VRG V SSE IN +Y + P++ ++ + + ++ L+ VA G +W
Sbjct: 89 DDDTVYVRGVQVLLSSEAINTIYGLGDPIDEH-SEFVEAITEPELATVLETVAIAGAEWN 148
BLAST of Lag0026142 vs. NCBI nr
Match: PON32444.1 (hypothetical protein PanWU01x14_361130 [Parasponia andersonii]) HSP 1 Score: 80.9 bits (198), Expect = 9.8e-12 Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 0
Query: 25 FVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLREESISMAVVRGKMVSFSSEDINPVYR 84
FV++VI+Q+ W++FCAHP++ IVPLVREFYA L + VRG V +S E IN VY
Sbjct: 6 FVAQVINQHNWRQFCAHPEDPIVPLVREFYAHLTDPEEDTVYVRGMQVPWSEEAINAVYG 65
Query: 85 IKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKPKSAV 141
+ P++ ++ I + + ++ L+ +A G +W S T + S L P + V
Sbjct: 66 LGDPVDEH-SEFIADLTEPELITVLETIAAAGAEWNVSAHGAYTCLRSVLTPAAKV 120
BLAST of Lag0026142 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida]) HSP 1 Score: 78.6 bits (192), Expect = 4.9e-11 Identity = 43/131 (32.82%), Postives = 72/131 (54.96%), Query Frame = 0
Query: 8 DFLNEKGFSNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLREESISMAVV 67
D + E GF + LP+F S V+ ++ W+ F I +VR FY G + ++
Sbjct: 175 DMMMEMGFIPASTPLPDFTS-VVLEHGWETFYQCLSIIIPTVVRAFYKGRLHGTKDAVIM 234
Query: 68 RGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQTKVK 127
+G +V FS+ DIN +Y++K + GN +I +P ++M++AL+ + G QW S +K
Sbjct: 235 KGCIVPFSARDINELYKMKDIPDASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKGIK 294
Query: 128 TLVPSDLKPKS 139
TL S L P++
Sbjct: 295 TLASSKLLPEA 304
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| PON46472.1 | 1.5e-15 | 39.01 | hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii] | [more] |
| PON35554.1 | 7.2e-15 | 39.01 | hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii] | [more] |
| PON65868.1 | 3.4e-12 | 36.89 | hypothetical protein PanWU01x14_113570 [Parasponia andersonii] | [more] |
| PON32444.1 | 9.8e-12 | 37.93 | hypothetical protein PanWU01x14_361130 [Parasponia andersonii] | [more] |
| XP_038904385.1 | 4.9e-11 | 32.82 | uncharacterized protein LOC120090747 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
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Relationships
The following mRNA feature(s) are a part of this gene:
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