Lag0026142 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026142
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationchr10: 30470642 .. 30471064 (+)
RNA-Seq ExpressionLag0026142
SyntenyLag0026142
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTATAAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAACAGAGCAGGAGCACTGCCAGAGTTCGTAAGTAGAGTCATTTCCCAGTACAAGTGGCAAGAGTTCTGTGCTCACCCTCAAGAGGCTATAGTGCCTTTAGTTCGAGAATTTTACGCTGGCCTAAGGGAGGAAAGCATTAGTATGGCGGTGGTGAGAGGCAAGATGGTTAGCTTCTCTTCAGAGGATATTAATCCGGTGTACAGGATCAAGGCACCCCTGAATCCAAGAGGGAACGATGTTATCAGGAACCCCTCGGCCAAGCAAATGAAGGAAGCATTGAAACTTGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCCCAAACAAAAGTGAAGACTCTAGTGCCAAGCGATTTAAAGCCAAAATCGGCAGTTTGA

mRNA sequence

ATGAAGATTATAAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAACAGAGCAGGAGCACTGCCAGAGTTCGTAAGTAGAGTCATTTCCCAGTACAAGTGGCAAGAGTTCTGTGCTCACCCTCAAGAGGCTATAGTGCCTTTAGTTCGAGAATTTTACGCTGGCCTAAGGGAGGAAAGCATTAGTATGGCGGTGGTGAGAGGCAAGATGGTTAGCTTCTCTTCAGAGGATATTAATCCGGTGTACAGGATCAAGGCACCCCTGAATCCAAGAGGGAACGATGTTATCAGGAACCCCTCGGCCAAGCAAATGAAGGAAGCATTGAAACTTGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCCCAAACAAAAGTGAAGACTCTAGTGCCAAGCGATTTAAAGCCAAAATCGGCAGTTTGA

Coding sequence (CDS)

ATGAAGATTATAAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAACAGAGCAGGAGCACTGCCAGAGTTCGTAAGTAGAGTCATTTCCCAGTACAAGTGGCAAGAGTTCTGTGCTCACCCTCAAGAGGCTATAGTGCCTTTAGTTCGAGAATTTTACGCTGGCCTAAGGGAGGAAAGCATTAGTATGGCGGTGGTGAGAGGCAAGATGGTTAGCTTCTCTTCAGAGGATATTAATCCGGTGTACAGGATCAAGGCACCCCTGAATCCAAGAGGGAACGATGTTATCAGGAACCCCTCGGCCAAGCAAATGAAGGAAGCATTGAAACTTGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCCCAAACAAAAGTGAAGACTCTAGTGCCAAGCGATTTAAAGCCAAAATCGGCAGTTTGA

Protein sequence

MKIIRKRDFLNEKGFSNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLREESISMAVVRGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKPKSAV
Homology
BLAST of Lag0026142 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 55/141 (39.01%), Postives = 82/141 (58.16%), Query Frame = 0

Query: 4   IRKRDFLNEKGF----SNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLRE 63
           I+ R    EKGF    S   G LP F+++VI+Q+ W++FCAHP++ IVPLVREFYA L +
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 97

Query: 64  ESISMAVVRGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQW 123
              +   VRG  VS+S E IN V+ +  P++   ++ I+N + + +   L+ VA  G +W
Sbjct: 98  PEENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEW 157

Query: 124 KESQTKVKTLVPSDLKPKSAV 141
             S     T + S L P + V
Sbjct: 158 NVSAQGAYTCIRSALTPAAKV 176

BLAST of Lag0026142 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 91.3 bits (225), Expect = 7.2e-15
Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = 0

Query: 4   IRKRDFLNEKGF----SNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLRE 63
           I+ R    EKGF    S   G LP F+++VI+Q+ W++FCAHP++ IVPLVREFYA L +
Sbjct: 29  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 88

Query: 64  ESISMAVVRGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQW 123
              +   VRG  VS+S E IN V+ +  P++   ++ I N +   +   L+ VA  G +W
Sbjct: 89  PVENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SEFIENITEHDLITVLETVAVAGAEW 148

Query: 124 KESQTKVKTLVPSDLKPKSAV 141
             S     T + S L P + V
Sbjct: 149 NVSAQGAYTCIRSALTPAAKV 167

BLAST of Lag0026142 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-12
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 0

Query: 4   IRKRDFLNEKGF---SNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLREE 63
           I+ R    EKGF   +++    P F++ VI+Q+ WQ FCAHP++ IVPLVREFYA +   
Sbjct: 29  IQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANMTNP 88

Query: 64  SISMAVVRGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWK 123
                 VRG  V  SSE IN +Y +  P++   ++ +   +  ++   L+ VA  G +W 
Sbjct: 89  DDDTVYVRGVQVLLSSEAINTIYGLGDPIDEH-SEFVEAITEPELATVLETVAIAGAEWN 148

BLAST of Lag0026142 vs. NCBI nr
Match: PON32444.1 (hypothetical protein PanWU01x14_361130 [Parasponia andersonii])

HSP 1 Score: 80.9 bits (198), Expect = 9.8e-12
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 0

Query: 25  FVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLREESISMAVVRGKMVSFSSEDINPVYR 84
           FV++VI+Q+ W++FCAHP++ IVPLVREFYA L +       VRG  V +S E IN VY 
Sbjct: 6   FVAQVINQHNWRQFCAHPEDPIVPLVREFYAHLTDPEEDTVYVRGMQVPWSEEAINAVYG 65

Query: 85  IKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQTKVKTLVPSDLKPKSAV 141
           +  P++   ++ I + +  ++   L+ +A  G +W  S     T + S L P + V
Sbjct: 66  LGDPVDEH-SEFIADLTEPELITVLETIAAAGAEWNVSAHGAYTCLRSVLTPAAKV 120

BLAST of Lag0026142 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-11
Identity = 43/131 (32.82%), Postives = 72/131 (54.96%), Query Frame = 0

Query: 8   DFLNEKGFSNRAGALPEFVSRVISQYKWQEFCAHPQEAIVPLVREFYAGLREESISMAVV 67
           D + E GF   +  LP+F S V+ ++ W+ F       I  +VR FY G    +    ++
Sbjct: 175 DMMMEMGFIPASTPLPDFTS-VVLEHGWETFYQCLSIIIPTVVRAFYKGRLHGTKDAVIM 234

Query: 68  RGKMVSFSSEDINPVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQTKVK 127
           +G +V FS+ DIN +Y++K   +  GN +I +P  ++M++AL+ +   G QW  S   +K
Sbjct: 235 KGCIVPFSARDINELYKMKDIPDASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKGIK 294

Query: 128 TLVPSDLKPKS 139
           TL  S L P++
Sbjct: 295 TLASSKLLPEA 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON46472.11.5e-1539.01hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON35554.17.2e-1539.01hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
PON65868.13.4e-1236.89hypothetical protein PanWU01x14_113570 [Parasponia andersonii][more]
PON32444.19.8e-1237.93hypothetical protein PanWU01x14_361130 [Parasponia andersonii][more]
XP_038904385.14.9e-1132.82uncharacterized protein LOC120090747 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026142.1Lag0026142.1mRNA