Lag0025787 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025787
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr10: 20404016 .. 20404782 (-)
RNA-Seq ExpressionLag0025787
SyntenyLag0025787
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAGGACAACAAAAGGAAGGAGAAACAAGCAAAGGAACCTCAAATGCATCTCAGCTAGAGGTAACAGTCTTCAGTAAGCAGCTTGGAAACCTGAAACTCACTGATGATGAAAAAGGAAAAGCCTTGGTCATGGAAGACGAAGAACTAAATGTCAAGATTCAAGACCTGAAACATATAGCGGTATGCAAAATTTACACAGAAAAATACATAAACCTAGAGATTTTCAGGAATATGATACCAAGAATATGGAATATAGAAGGGAAGGTTACCATAAAGAAAGTGGGTGAGAATCTATTCGAATGCACCTTTAACTCGATGAGCATCAAGAGGAAAGTCATAGAGGGACGTCTGTGGCATTTTGACAGAGCCATGCTGCTATTTGAAAGATAAAAGGCAATTAGAGGTATTCCATCTTGAAATTCCAGTATGCCTCATTTTGGATCCACTACCTGGATATCCCAAGAGTTTGTATAAACAGGAAATGGGCGGAAGCATTAGGCAACACAGCAGACGACTTCAAAAGGGTAGATTTAGAAGAGGAAGAGGAAGAAGGGAAAGACTCAATGAGAATCAGAGTGAAGATAGACGTCAAAAAGCCTCTAAGAAGGGGGATAGTGATTAAAATAGGAAGCAAGGTAGAAGAAGAATGGATAGAAATGAGGAATGAAAAACTGTCGGATTTCTGTTATGGTTGCGGTAGATTGGGCCATTTAGCAAGAGAATGTAGCGATCAAGAGGCCCTCAAGAATGATAAACTCTAA

mRNA sequence

ATGGATGAAGGACAACAAAAGGAAGGAGAAACAAGCAAAGGAACCTCAAATGCATCTCAGCTAGAGGTAACAGTCTTCAGTAAGCAGCTTGGAAACCTGAAACTCACTGATGATGAAAAAGGAAAAGCCTTGGTCATGGAAGACGAAGAACTAAATGTCAAGATTCAAGACCTGAAACATATAGCGTATGCCTCATTTTGGATCCACTACCTGGATATCCCAAGAGTTTGTATAAACAGGAAATGGGCGGAAGCATTAGGCAACACAGCAGACGACTTCAAAAGGGTAGATTTAGAAGAGGAAGAGGAAGAAGGGAAAGACTCAATGAGAATCAGAGTGAAGATAGACGTCAAAAAGCCTCTAAGAAGGGGGATAGTGATTAAAATAGGAAGCAAGGTAGAAGAAGAATGGATAGAAATGAGGAATGAAAAACTGTCGGATTTCTGTTATGGTTGCGGTAGATTGGGCCATTTAGCAAGAGAATGTAGCGATCAAGAGGCCCTCAAGAATGATAAACTCTAA

Coding sequence (CDS)

ATGGATGAAGGACAACAAAAGGAAGGAGAAACAAGCAAAGGAACCTCAAATGCATCTCAGCTAGAGGTAACAGTCTTCAGTAAGCAGCTTGGAAACCTGAAACTCACTGATGATGAAAAAGGAAAAGCCTTGGTCATGGAAGACGAAGAACTAAATGTCAAGATTCAAGACCTGAAACATATAGCGTATGCCTCATTTTGGATCCACTACCTGGATATCCCAAGAGTTTGTATAAACAGGAAATGGGCGGAAGCATTAGGCAACACAGCAGACGACTTCAAAAGGGTAGATTTAGAAGAGGAAGAGGAAGAAGGGAAAGACTCAATGAGAATCAGAGTGAAGATAGACGTCAAAAAGCCTCTAAGAAGGGGGATAGTGATTAAAATAGGAAGCAAGGTAGAAGAAGAATGGATAGAAATGAGGAATGAAAAACTGTCGGATTTCTGTTATGGTTGCGGTAGATTGGGCCATTTAGCAAGAGAATGTAGCGATCAAGAGGCCCTCAAGAATGATAAACTCTAA

Protein sequence

MDEGQQKEGETSKGTSNASQLEVTVFSKQLGNLKLTDDEKGKALVMEDEELNVKIQDLKHIAYASFWIHYLDIPRVCINRKWAEALGNTADDFKRVDLEEEEEEGKDSMRIRVKIDVKKPLRRGIVIKIGSKVEEEWIEMRNEKLSDFCYGCGRLGHLARECSDQEALKNDKL
Homology
BLAST of Lag0025787 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 0

Query: 44  LVMEDEELNVKIQDLKHIAYASFWIHYLDIPRVCINRKWAEALGNTADDFKRVDLEEEEE 103
           L++ + + NV+  D++ +    FW+H  ++P V +N+K  E +GN    F  +D E+   
Sbjct: 105 LMLGEMDPNVQPSDIQ-LTRVQFWVHVCNLPLVLMNKKVGEIVGNAVGQFIDMDYEDGGI 164

Query: 104 EGKDSMRIRVKIDVKKPLRRGIVIKIGSKVEEEWIEMRNEKLSDFCYGCGRLGHLARECS 163
               +MRIRV +DV+KPLRRG+ + + S  E  W++ + E+L  +CY CGRLGH  REC 
Sbjct: 165 VWGRTMRIRVALDVRKPLRRGMKLAL-SSAEPIWVDFKYERLPIYCYFCGRLGHSERECD 224

Query: 164 DQ 166
           D+
Sbjct: 225 DK 224

BLAST of Lag0025787 vs. NCBI nr
Match: TXG73753.1 (hypothetical protein EZV62_002332 [Acer yangbiense])

HSP 1 Score: 92.4 bits (228), Expect = 4.0e-15
Identity = 47/129 (36.43%), Postives = 76/129 (58.91%), Query Frame = 0

Query: 41  GKALVMEDEELNVKIQDLKHIAYASFWIHYLDIPRVCINRKWAEALGNTADDFKRVDLEE 100
           GK+L+  ++ L V          A FW+   DIP +C+NR+ A+ +     +   + LE 
Sbjct: 74  GKSLIALEKPLGVGSISKLRFNKADFWVQIHDIPILCMNRRTAKWMAEQLGEVVEIPLES 133

Query: 101 EEEEGKDSMRIRVKIDVKKPLRRGIVIKIGSKVEEEWIEMRNEKLSDFCYGCGRLGHLAR 160
           +E  GK  MR++V++D+ KPL+R +  K+G   E   + +R E+L DF Y CGR+GH+ +
Sbjct: 134 KECWGK-YMRVKVRLDILKPLKRWLRPKLGKSDEITMVGLRYERLPDFYYTCGRIGHVLQ 193

Query: 161 ECSDQEALK 170
           EC D++A K
Sbjct: 194 ECQDEDARK 201

BLAST of Lag0025787 vs. NCBI nr
Match: XP_028124075.1 (uncharacterized protein LOC114321128 [Camellia sinensis])

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-14
Identity = 45/122 (36.89%), Postives = 75/122 (61.48%), Query Frame = 0

Query: 44  LVMEDEELNVKIQDLKHIAYASFWIHYLDIPRVCINRKWAEALGNTADDFKRVDLEEEEE 103
           L++ + + NV+  D++ +    FW+H  ++P V +N++  + +GN    F  +D E+   
Sbjct: 105 LMLGEMDPNVQPSDIQ-LTGVQFWVHVCNLPLVLMNKQVGQIVGNAVGQFIDMDYEDGGI 164

Query: 104 EGKDSMRIRVKIDVKKPLRRGIVIKIGSKVEEEWIEMRNEKLSDFCYGCGRLGHLARECS 163
               +MRIRV IDV+KPLRRG+ + + S  +  W++ + E+L  +CY CGRLGH  REC 
Sbjct: 165 AWGRTMRIRVAIDVRKPLRRGMKLAL-SSADPIWVDFKYERLPIYCYFCGRLGHSDRECD 224

Query: 164 DQ 166
           D+
Sbjct: 225 DK 224

BLAST of Lag0025787 vs. NCBI nr
Match: XP_028071384.1 (uncharacterized protein LOC114273772 [Camellia sinensis])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-14
Identity = 44/119 (36.97%), Postives = 74/119 (62.18%), Query Frame = 0

Query: 44  LVMEDEELNVKIQDLKHIAYASFWIHYLDIPRVCINRKWAEALGNTADDFKRVDLEEEEE 103
           L++ + + NV+  D++ + +  FW+H  ++P + +N+K  + +GN    F  +D E+   
Sbjct: 105 LMLGEMDPNVQPSDIQ-LTWVQFWVHVCNLPLILMNKKVGQIVGNAVGQFIDMDYEDGGI 164

Query: 104 EGKDSMRIRVKIDVKKPLRRGIVIKIGSKVEEEWIEMRNEKLSDFCYGCGRLGHLAREC 163
               +M IRV +DV+KPLRRG+ + + S VE  W++ + E+L  +CY CGRLGH  REC
Sbjct: 165 AWGRTMLIRVALDVRKPLRRGMKLAL-SSVEPIWVDFKYERLPIYCYFCGRLGHSDREC 221

BLAST of Lag0025787 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-14
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 42  KALVMEDEELNVKIQDLKHIAYASFWIHYLDIPRVCINRKWAEALGNTADDFKRVDLEEE 101
           KAL++  +  + K          +FWIH  D+P   +N+  A  LGN   +F  VD  E+
Sbjct: 104 KALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEK 163

Query: 102 EEEGKDSMRIRVKIDVKKPLRRGIVIKIGSKVEEEWIEMRNEKLSDFCYGCGRLGHLARE 161
                 S+RIRV ID+ KPLRRGI I I   +   WI ++ E+L DFCY CG +GH + +
Sbjct: 164 GFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHD 223

Query: 162 C 163
           C
Sbjct: 224 C 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_028122006.11.4e-1538.52uncharacterized protein LOC114319195 [Camellia sinensis][more]
TXG73753.14.0e-1536.43hypothetical protein EZV62_002332 [Acer yangbiense][more]
XP_028124075.11.5e-1436.89uncharacterized protein LOC114321128 [Camellia sinensis][more]
XP_028071384.12.6e-1436.97uncharacterized protein LOC114273772 [Camellia sinensis][more]
XP_022156185.13.4e-1439.67uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 115..163
e-value: 4.4E-13
score: 48.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR31286:SF26BNAC07G15150D PROTEINcoord: 53..171
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 53..171
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 149..162
score: 10.279065
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 146..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025787.1Lag0025787.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding