Lag0025366 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025366
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ribonuclease H2 subunit C
Location	chr10: 11888817 .. 11891536 (+)
RNA-Seq Expression	Lag0025366
Synteny	Lag0025366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTGAAAACGAGAGAGAAAGGGAAATAACGGTGGATTTTGAGTTTGGGAGGGACTCTGTAGCTGTCGATCTCAGCGGCAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCCCAGTATTTCAAACCCAAATCCACTGGTAATGCCCTAATTTTCTCTTTTTCTCCTTGTCCGCTTTATGTATTTGGGTAATTTGTTTGTAATTTACCTAGTGGTTTCTTTTTCAAAGGAGTTGAGGTTGATGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGTACGGCCTTCCTTAACATTGTCTATGTTTTCATTTACTTGTTTAAATTCATGTAGTTAATGTTTAGTATGGTAGTAGTTTCAAGGCCCACTTCTATCGACTTTGGTGAATAATAATTCAAATAAGCAGAAGTTTGAACATTATGATTCTGGTAGTTCTTGTTCTCAGATTTAGCTGCGACTGTTTGTCTTATATGTGGGTTGGTTGGGATTCACTGAGATGATTGGTGAAGAAATTTTCTGCAACTCTTAGGTTATTGTTCTGATTAATGTTCTTATTTCACTTGTAATAAAAAGATGCTATATGATGGTACACTGGTTGAAGATGAACAGGATATTTCAACTGGAACAAGTTTATGAATTTAATCCGAGGAATCTTTGTCTGTTGTCTTATTCTAAGGTTGTGTTTAGCATTAACTATCTATTTTATTCTCTTTTCATGATTAACTTCTGATAGGCCCCAAATTACTAAAGTATATGAACGTAGGCGCGTGAGGAAGAAGGACAGTGAGTAATAGGGGTCTTTGTGCGTTTTTTTGAGGGACCAACTTATATGCTGTTAGTTAGAATGAGAGTGAGGAGGGACAGTTGTTTATAAGGAGAGTGTGTTTGAGGGATACGGTATCTTTTTGGCTATTGTGGTTTTGTATTTCTCTGAGGAGAACTTGGGAGAGAAAGGAAGCTCTCAAATCTTCCCTGTTCTGTATTGATAAATAAAATTGTTGGCTGGGCCCTATCAACTTCATTTGAGATCTATTTAATTTTCTGGGACCAATTGTGTTTTACCGAATTACACAAAAAATTTGAGTTTATTGTTTTACTGCCCTATGTAGTATTAATTCTGCTTTTAGGATTGTCAACAGCCTATGGCCTAAGCATTTCATGAGTAAAATAATACTTTCCCTGAGTCTCTCTCTCTCTTTAGCTCCTTCAGCTACATTTTCATGAGGCAAGTTATTTTCAGAAACTTCTGTTGGGTTAGTTCCCCAGTTCCTATTCCTTGTTTTGCATTGCATGACCGTTTTGAAGAAGAGATAACAGGGAAAGAGATAACTTCGACCTTCTCATTTTGTATGAGTATGGTATGTTTTTGGGAGATTTGGAATGAAATAACCATCGATTTTTTGATGATTATAGGGAAGAAAAAAGAAGGAACGGGACTATTCATTTTCATGTTTCTTTTTAGTTTGTAGGCTGCTATATAAGAACAGTTTTGTAACTCCCTTTTTTGTTTTTGTGATTGTAGCCAATTGGAAAGTCTTTATATATATAAAAATATTTGATAAGAAACAACACTTTGAGAAAAAAAATATATGAAAGAATACACCAACGCAGACAAAAAACAACCAAAAAAAAAAAACACCCACAAAAACTACAAGAACAGATTCCAATCCAAAAGAATAAGACCAAGTTGATACTTACAGAAGGGCCTAGTCACAGAAGCTCACAAAGACGAGTTGAATCTAATCGTCCTGGAAAGTTCTCTTCCGGATCTCTCCACCCCACCAAGTCTTTATATATGTATGTCATATATCAAGTATCCCTGGCCTTTGTTTGAATGGGTATACAGTCTTCTACTCTTTGAGTTAATGTTAATTGTTTTCTGTTAAAAAAATGTTCTGTTTCCACCATTTCTGCCTGATTTGAACTGAAAGCAGGGCTTCATACAGACTGTAATATCTATATAAACACAATTCATTTCACCAATTTGAACTAAGGGGTTAATGTCTATTTTAAATGTTCTTCTTCAGGCTATGTGTTGGGTAGGAAAAGTCTTGGCAAGAGAAAAGCTTCTGAACAGTCCAAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGGAAACATTACATATTGGAACCATGGCACTCTGCCTTCACAAGATGATACGTTTCGGCGTTCTTTTCACTGGCTTGCTGTTGCACAAGCAGTATGGTTTCGATCCACACTTGACAAATTAATTTTTTCGGATCTAGATATATAGGCATGTCTTGTTTGCATCTGTCTGCATCTAAGTACTTAAACTTCTCTGGGCATTAGGAATAGTTTCGTACAAGCTTAAACTTACAAATAAGAAATGGAAATACGGTGGATATTTTTGTTTAAAAATACTGTATTGGTTATGTAACTGCAACGTTTGAGCATTTTTCTCTCCAATATTGGTCAAATATGGAAAAAGAAAGATCCATTTTATTTGTAACATTTCTTTGACGGCTGTTTGAAGAATTTACTATTGTTGCTATTGGACATCAGAAGTAAATTTGTTTCCTCTAGTTTTCTAACTCCCGGAATTTTGTTTATGGTTGCAGTTGCACCAACCGGTGACAGCAGAAGACTTGGCATCTGCATCTACTGCTCCCAAGAACATGAGTTGA

mRNA sequence

ATGGATGCTGAAAACGAGAGAGAAAGGGAAATAACGGTGGATTTTGAGTTTGGGAGGGACTCTGTAGCTGTCGATCTCAGCGGCAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCCCAGTATTTCAAACCCAAATCCACTGGAGTTGAGGTTGATGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTATGTGTTGGGTAGGAAAAGTCTTGGCAAGAGAAAAGCTTCTGAACAGTCCAAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGGAAACATTACATATTGGAACCATGGCACTCTGCCTTCACAAGATGATACGTTTCGGCGTTCTTTTCACTGGCTTGCTGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAAGACTTGGCATCTGCATCTACTGCTCCCAAGAACATGAGTTGA

Coding sequence (CDS)

ATGGATGCTGAAAACGAGAGAGAAAGGGAAATAACGGTGGATTTTGAGTTTGGGAGGGACTCTGTAGCTGTCGATCTCAGCGGCAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCCCAGTATTTCAAACCCAAATCCACTGGAGTTGAGGTTGATGGTTTGAGCGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTATGTGTTGGGTAGGAAAAGTCTTGGCAAGAGAAAAGCTTCTGAACAGTCCAAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGGAAACATTACATATTGGAACCATGGCACTCTGCCTTCACAAGATGATACGTTTCGGCGTTCTTTTCACTGGCTTGCTGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAAGACTTGGCATCTGCATCTACTGCTCCCAAGAACATGAGTTGA

Protein sequence

MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS

Homology

[Close]

BLAST of Lag0025366 vs. NCBI nr
Match: XP_038893586.1 (uncharacterized protein C12B10.15c [Benincasa hispida])

HSP 1 Score: 301.2 bits (770), Expect = 5.5e-78
Identity = 145/166 (87.35%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           M+AENER+ E+ VDF+F  DSVA+DLSGKVHQLPCAIKFDGPCSVSQYFKPKSTG+E DG
Sbjct: 1   MNAENERKGEVIVDFDFESDSVALDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEFDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVEEAYFRGRKLQGATISLPEGYSGYVLG+KSLGKRKASEQ ++SSPWQVKAKF NITY
Sbjct: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRKASEQDQNSSPWQVKAKFANITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS 167
           WNH TLPSQDDTF+RSFHWL VAQALH+PVTAEDLASASTA KNMS
Sbjct: 121 WNHDTLPSQDDTFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS 166

[Close]

BLAST of Lag0025366 vs. NCBI nr
Match: KAG6583796.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.4 bits (760), Expect = 7.9e-77
Identity = 142/166 (85.54%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+ENER+RE+ VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS 167
           WNH TLP+QDDTF+RSFHWL VAQALH+PVTAEDLA+AS A KNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Lag0025366 vs. NCBI nr
Match: XP_022927160.1 (uncharacterized protein C12B10.15c [Cucurbita moschata])

HSP 1 Score: 295.0 bits (754), Expect = 3.9e-76
Identity = 141/166 (84.94%), Postives = 154/166 (92.77%), Query Frame = 0


Query: 1   MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+E ER+RE+ VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS 167
           WNH TLP+QDDTF+RSFHWL VAQALH+PVTAEDLA+AS A KNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Lag0025366 vs. NCBI nr
Match: XP_023001622.1 (uncharacterized protein C12B10.15c [Cucurbita maxima])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 140/166 (84.34%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+E ER+RE+ VDF+FG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSV+ AYFRGRKLQGATISLPEGY GYV+GRKSL KRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS 167
           WNH TLP+QDDTF+RSFHWL VAQALH+PVTAEDLA ASTA KNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

[Close]

BLAST of Lag0025366 vs. NCBI nr
Match: XP_023519278.1 (uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.7 bits (748), Expect = 1.9e-75
Identity = 140/166 (84.34%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MDAENEREREITVDFEFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDG 60
           MD+E+ER+RE+ VDF+FG DS  VDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDG
Sbjct: 1   MDSESERKREVIVDFDFGSDSGDVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITY 120
           LSVE AYFRGRKLQGATISLPEGYSGYV+GRKS GKRKASE+S+DSS WQVKAKF NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGTLPSQDDTFRRSFHWLAVAQALHQPVTAEDLASASTAPKNMS 167
           WNH TLP+QDDTF RSFHWL VAQALH+P TAEDLA+ASTA KNMS
Sbjct: 121 WNHDTLPTQDDTFPRSFHWLTVAQALHKPATAEDLAAASTALKNMS 166

[Close]

BLAST of Lag0025366 vs. ExPASy Swiss-Prot
Match: Q10448 (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 38/118 (32.20%), Postives = 55/118 (46.61%), Query Frame = 0


Query: 29  KVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSG-Y 88
           K   LPC I +DGP  V +YF  K   +  +  S      RGR+L G  + LPE Y+G  
Sbjct: 20  KASLLPCHISYDGPAPVFEYFHDK-IQISNNTHSKTTVCLRGRELNGEELDLPENYTGQV 79

Query: 89  VLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTL-PSQDDTFRRS-FHWLAVA 144
           VL    L   + SE+    S W + + F  +  WN   +  S+ D ++R    W+  A
Sbjct: 80  VLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQFA 136

The following BLAST results are available for this feature:

BLAST of Lag0025366 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893586.1	5.5e-78	87.35	uncharacterized protein C12B10.15c [Benincasa hispida]	[more]
KAG6583796.1	7.9e-77	85.54	Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022927160.1	3.9e-76	84.94	uncharacterized protein C12B10.15c [Cucurbita moschata]	[more]
XP_023001622.1	1.5e-75	84.34	uncharacterized protein C12B10.15c [Cucurbita maxima]	[more]
XP_023519278.1	1.9e-75	84.34	uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0025366 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10448	2.1e-08	32.20	Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013924	Ribonuclease H2, subunit C	PFAM	PF08615	RNase_H2_suC	coord: 30..146 e-value: 4.8E-21 score: 75.4
IPR013924	Ribonuclease H2, subunit C	CDD	cd09271	RNase_H2-C	coord: 31..123 e-value: 6.08448E-36 score: 118.242
None	No IPR available	GENE3D	2.40.128.680		coord: 1..153 e-value: 1.3E-39 score: 136.6
None	No IPR available	PANTHER	PTHR47204	OS02G0168900 PROTEIN	coord: 19..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025366.1	Lag0025366.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0032299	ribonuclease H2 complex