|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTGTTTTCAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTGTGTTGTGATTTTGCCTGTATCTGCAGCTGAACAATCCTCTTCTCCAGCTCCAGCTCCCACTAGTGATGGTTAGTTCTCTTTTCTTTCTGGTTTTTTTCTGTTTGTTTCTTGAGAAATTTGCTGGGAAAATGACTGGAAACCCAAAAAAGGCTTTGGAATGAACTCTTCTCTTCAAATTCCAGGTTCTAAGCAGCACCAATTCAATTGGATCTCCTTGAACTCAAAATGGGTTTTGGGAAATTTGGCTCCTTGTTTGAATTGA mRNA sequence ATGGCTGTTTTCAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTGTGTTGTGATTTTGCCTGTATCTGCAGCTGAACAATCCTCTTCTCCAGCTCCAGCTCCCACTAGTGATGGTTCTAAGCAGCACCAATTCAATTGGATCTCCTTGAACTCAAAATGGGTTTTGGGAAATTTGGCTCCTTGTTTGAATTGA Coding sequence (CDS) ATGGCTGTTTTCAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTGTGTTGTGATTTTGCCTGTATCTGCAGCTGAACAATCCTCTTCTCCAGCTCCAGCTCCCACTAGTGATGGTTCTAAGCAGCACCAATTCAATTGGATCTCCTTGAACTCAAAATGGGTTTTGGGAAATTTGGCTCCTTGTTTGAATTGA Protein sequence MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDGSKQHQFNWISLNSKWVLGNLAPCLN
Homology
BLAST of Lag0020094 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 66.6 bits (161), Expect = 9.2e-08 Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 Query: 1 MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDGS 44 MAV RACFGIYAVIIAIF VV+LPVS AE +SSPAPAPTSDG+ Sbjct: 1 MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGT 43
BLAST of Lag0020094 vs. NCBI nr
Match: XP_038898060.1 (arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalactan protein 41-like [Benincasa hispida]) HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06 Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 Query: 1 MAVFRACFGIY-AVIIAIFCVVILPVSAAEQSSSPAPAPTSDGS 44 MAV +ACFGIY AVIIA+F VV LPVSAAE SSSPAPAPTSDG+ Sbjct: 1 MAVLKACFGIYAAVIIAVFYVVTLPVSAAEFSSSPAPAPTSDGT 44
BLAST of Lag0020094 vs. NCBI nr
Match: XP_022140891.1 (arabinogalactan peptide 22-like [Momordica charantia]) HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06 Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 Query: 1 MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDGS 44 MAV RACFGIYA IIAI V+ILPVS AE SSSPAPAP+SDG+ Sbjct: 1 MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGT 43
BLAST of Lag0020094 vs. NCBI nr
Match: XP_022968217.1 (arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05 Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0 Query: 1 MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSS--PAPAPTSDGS 44 MA RACFG+YAVIIAIF VV+LPVS AE +SS PAPAPTSDG+ Sbjct: 21 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGT 65
BLAST of Lag0020094 vs. NCBI nr
Match: XP_022968216.1 (arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05 Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0 Query: 1 MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSS--PAPAPTSDGS 44 MA RACFG+YAVIIAIF VV+LPVS AE +SS PAPAPTSDG+ Sbjct: 26 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGT 70
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022945187.1 | 9.2e-08 | 83.72 | arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala... | [more] |
XP_038898060.1 | 2.9e-06 | 81.82 | arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalac... | [more] |
XP_022140891.1 | 3.8e-06 | 79.07 | arabinogalactan peptide 22-like [Momordica charantia] | [more] |
XP_022968217.1 | 1.5e-05 | 75.56 | arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima] | [more] |
XP_022968216.1 | 1.5e-05 | 75.56 | arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016021 |
integral component of membrane |
|