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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAAACTCTGGTGTGTTCCTTTCGTCAAGCTCTCGACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCAACGACTCAACACTCACAAAGAATCTCAGCAATTTCACGATAACATCCAGACGCCAAATCCAACTAAACGCCAAGGGCTTCACAGGTTCTTCGGCGACGGCGAAAGACAGAGAAACCGCCGCGGAAAAACTTTCAGGCCAAAACAGTAGCAAAGATGACGGGGGCGACTACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTCGGAATTCCGATGGCGTTCGGTGTGACGTTGCTGAAGATTTTCGAGGCGATCAAGGTGCAGAACCTGTGGGATGTGCCGATCTGGCTGCCATTTTTGACGATTTTTTTGACATTTGGAGCTTCGACGATGGGAATTGCTTACGGGACGTTATCGGCGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGAACAGGTGGAGAAGAATTGGGTAGAGATGTGGAAGGAGGAAGATGAAGCCAATCGCCGAGGAAACTGA mRNA sequence ATGAAAACTCTGGTGTGTTCCTTTCGTCAAGCTCTCGACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCAACGACTCAACACTCACAAAGAATCTCAGCAATTTCACGATAACATCCAGACGCCAAATCCAACTAAACGCCAAGGGCTTCACAGGTTCTTCGGCGACGGCGAAAGACAGAGAAACCGCCGCGGAAAAACTTTCAGGCCAAAACAGTAGCAAAGATGACGGGGGCGACTACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTCGGAATTCCGATGGCGTTCGGTGTGACGTTGCTGAAGATTTTCGAGGCGATCAAGGTGCAGAACCTGTGGGATGTGCCGATCTGGCTGCCATTTTTGACGATTTTTTTGACATTTGGAGCTTCGACGATGGGAATTGCTTACGGGACGTTATCGGCGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGAACAGGTGGAGAAGAATTGGGTAGAGATGTGGAAGGAGGAAGATGAAGCCAATCGCCGAGGAAACTGA Coding sequence (CDS) ATGAAAACTCTGGTGTGTTCCTTTCGTCAAGCTCTCGACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCAACGACTCAACACTCACAAAGAATCTCAGCAATTTCACGATAACATCCAGACGCCAAATCCAACTAAACGCCAAGGGCTTCACAGGTTCTTCGGCGACGGCGAAAGACAGAGAAACCGCCGCGGAAAAACTTTCAGGCCAAAACAGTAGCAAAGATGACGGGGGCGACTACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTCGGAATTCCGATGGCGTTCGGTGTGACGTTGCTGAAGATTTTCGAGGCGATCAAGGTGCAGAACCTGTGGGATGTGCCGATCTGGCTGCCATTTTTGACGATTTTTTTGACATTTGGAGCTTCGACGATGGGAATTGCTTACGGGACGTTATCGGCGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGAACAGGTGGAGAAGAATTGGGTAGAGATGTGGAAGGAGGAAGATGAAGCCAATCGCCGAGGAAACTGA Protein sequence MKTLVCSFRQALDLSKPPPWKQRSRINDSTLTKNLSNFTITSRRQIQLNAKGFTGSSATAKDRETAAEKLSGQNSSKDDGGDYDDEIPEAVAKRIITRILAFVGIPMAFGVTLLKIFEAIKVQNLWDVPIWLPFLTIFLTFGASTMGIAYGTLSASLDPEKEGTLFGWEQVEKNWVEMWKEEDEANRRGN
Homology
BLAST of Lag0020061 vs. NCBI nr
Match: XP_023541387.1 (uncharacterized protein PAM68-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 311.6 bits (797), Expect = 4.6e-81 Identity = 158/190 (83.16%), Postives = 168/190 (88.42%), Query Frame = 0
Query: 1 MKTLVCSFRQALDLSKPPPWKQRSRINDSTLTKNLSNFTITSRRQIQLNAKGFTGSSATA 60
MK LVCSFR ALDLSKPPPWKQRSRI+DST TKNL FT TSR QIQLNAKGFTGS ATA
Sbjct: 1 MKALVCSFRHALDLSKPPPWKQRSRIDDSTATKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
Query: 61 KDRETAAEKLSGQNSSKDDGGDYDDEIPEAVAKRIITRILAFVGIPMAFGVTLLKIFEAI 120
KDRETA +K SGQN+S+ GG DDEIPEAVAKRIITRILAFVG+PMAFGVTL+KI EA+
Sbjct: 61 KDRETAVKKPSGQNNSRGGGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
Query: 121 KVQNLWDVPIWLPFLTIFLTFGASTMGIAYGTLSASLDPEKEGTLFGWEQVEKNWVEMWK 180
Q LW VPIWLPFLTIFLTFGASTMGIAYGTLS SLDPEKEGTLFGW++ +KNWVEMWK
Sbjct: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
Query: 181 EEDEANRRGN 191
EEDEANR GN
Sbjct: 181 EEDEANRGGN 190
BLAST of Lag0020061 vs. NCBI nr
Match: KAG7013265.1 (putative protein PAM68-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 311.2 bits (796), Expect = 6.0e-81 Identity = 160/190 (84.21%), Postives = 169/190 (88.95%), Query Frame = 0
Query: 1 MKTLVCSFRQALDLSKPPPWKQRSRINDSTLTKNLSNFTITSRRQIQLNAKGFTGSSATA 60
MK LVCSFR ALDLSKPPPWKQRSRI+DST TKNL FT TSR QIQLNAKGFTGS ATA
Sbjct: 1 MKALVCSFRHALDLSKPPPWKQRSRIDDSTATKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
Query: 61 KDRETAAEKLSGQNSSKDDGGDYDDEIPEAVAKRIITRILAFVGIPMAFGVTLLKIFEAI 120
KDRETA +K SGQN+S+D GG DDEIPEAVAKRIITRILAFVGIPMAFGVTL+KI EA+
Sbjct: 61 KDRETAVKKPSGQNNSRDGGGG-DDEIPEAVAKRIITRILAFVGIPMAFGVTLVKILEAV 120
Query: 121 KVQNLWDVPIWLPFLTIFLTFGASTMGIAYGTLSASLDPEKEGTLFGWEQVEKNWVEMWK 180
Q LW VPIWLPFLTIFLTFGASTMGIAYGTLS SLDPEKEGTLFGW++ +KNWVEMWK
Sbjct: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
Query: 181 EEDEANRRGN 191
EEDEANR GN
Sbjct: 181 EEDEANRGGN 189
BLAST of Lag0020061 vs. NCBI nr
Match: XP_022944901.1 (uncharacterized protein PAM68-like [Cucurbita moschata]) HSP 1 Score: 310.8 bits (795), Expect = 7.9e-81 Identity = 159/190 (83.68%), Postives = 169/190 (88.95%), Query Frame = 0
Query: 1 MKTLVCSFRQALDLSKPPPWKQRSRINDSTLTKNLSNFTITSRRQIQLNAKGFTGSSATA 60
MK LVCSFR AL LSKPPPWKQRSRI+DST TKNL FT TSR QIQLNAKGFTGS ATA
Sbjct: 1 MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
Query: 61 KDRETAAEKLSGQNSSKDDGGDYDDEIPEAVAKRIITRILAFVGIPMAFGVTLLKIFEAI 120
KDRETA +K SGQN+S+D GGD DDEIPEAVAKRIITRILAFVG+PMAFGVTL+KI EA+
Sbjct: 61 KDRETAVKKPSGQNNSRDGGGD-DDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
Query: 121 KVQNLWDVPIWLPFLTIFLTFGASTMGIAYGTLSASLDPEKEGTLFGWEQVEKNWVEMWK 180
Q LW VPIWLPFLTIFLTFGASTMGIAYGTLS SLDPEKEGTLFGW++ +KNWVEMWK
Sbjct: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
Query: 181 EEDEANRRGN 191
EEDEANR GN
Sbjct: 181 EEDEANRGGN 189
BLAST of Lag0020061 vs. NCBI nr
Match: KAG6574203.1 (putative protein PAM68-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 310.1 bits (793), Expect = 1.3e-80 Identity = 160/191 (83.77%), Postives = 169/191 (88.48%), Query Frame = 0
Query: 1 MKTLVCSFRQALDLSKPPPWKQRSRINDSTLTKNLSNFTITSRRQIQLNAKGFTGSSATA 60
MK LVCSFR AL LSKPPPWKQRSRI+DST TKNL FT TSR QIQLNAKGFTGS ATA
Sbjct: 1 MKALVCSFRHALHLSKPPPWKQRSRIDDSTATKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
Query: 61 KDRETAAEKLSGQNSSKD-DGGDYDDEIPEAVAKRIITRILAFVGIPMAFGVTLLKIFEA 120
KDRETA +K SGQN+S+D GGD DDEIPEAVAKRIITRILAFVGIPMAFGVTL+KI EA
Sbjct: 61 KDRETAVKKPSGQNNSRDGGGGDDDDEIPEAVAKRIITRILAFVGIPMAFGVTLVKILEA 120
Query: 121 IKVQNLWDVPIWLPFLTIFLTFGASTMGIAYGTLSASLDPEKEGTLFGWEQVEKNWVEMW 180
+ Q LW VPIWLPFLTIFLTFGASTMGIAYGTLS SLDPEKEGTLFGW++ +KNWVEMW
Sbjct: 121 VHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMW 180
Query: 181 KEEDEANRRGN 191
KEEDEANR GN
Sbjct: 181 KEEDEANRGGN 191
BLAST of Lag0020061 vs. NCBI nr
Match: XP_022968628.1 (uncharacterized protein PAM68-like [Cucurbita maxima]) HSP 1 Score: 305.8 bits (782), Expect = 2.5e-79 Identity = 159/190 (83.68%), Postives = 170/190 (89.47%), Query Frame = 0
Query: 1 MKTLVCSFRQALDLSKPPPWKQRSRINDSTLTKNLSNFTITSRRQIQLNAKGFTGSSATA 60
MK LVCSFR ALDLSKPPPWKQRSRI++ST TKNL FT TSR QIQLNAKGFTGS ATA
Sbjct: 1 MKALVCSFRHALDLSKPPPWKQRSRIDNSTTTKNLRVFTGTSRGQIQLNAKGFTGSPATA 60
Query: 61 KDRETAAEKLSGQNSSKDDGGDYDDEIPEAVAKRIITRILAFVGIPMAFGVTLLKIFEAI 120
KDRETA +KLS QN+S+ DGGD DDEIPEAVAKRIITRILAFVGIPMAFGVTL+KI EA+
Sbjct: 61 KDRETAVKKLSDQNNSR-DGGD-DDEIPEAVAKRIITRILAFVGIPMAFGVTLVKILEAV 120
Query: 121 KVQNLWDVPIWLPFLTIFLTFGASTMGIAYGTLSASLDPEKEGTLFGWEQVEKNWVEMWK 180
Q LW VPIWLPFLTIFLTFGASTMGIAYGTLS SLDPEKEGTLFGW++ +KNWVEMWK
Sbjct: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
Query: 181 EEDEANRRGN 191
EEDEANR G+
Sbjct: 181 EEDEANRGGD 188
BLAST of Lag0020061 vs. ExPASy Swiss-Prot
Match: Q9LTD9 (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 3.7e-25 Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 0
Query: 1 MKTLVCSFRQALDLSKPPPWKQRSRINDSTLTKNLSNFTITSRRQIQLNAKGFTGSSATA 60
M+ L+CS R P SR T + N + + N K S A
Sbjct: 1 MRALLCSHRLL-------PLSSLSRTTVKTKSHN--------PKTLYPNNKPRWESKLHA 60
Query: 61 KDRETAAEKLSGQNSSKDDGGDYDDEIPEAVAKRIITRILAFVGIPMAFGVTLLKIFEAI 120
+ + + S + D + D IP+ V +R++ RI+ VG P+ GV +LK+ E +
Sbjct: 61 GPKGFQSSRTSEKPGRPDPDPEDDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVL 120
Query: 121 KVQNLWDVPIWLPFLTIFLTFGASTMGIAYGTLSASLDPEKEGTLFGWEQVEKNWVEMWK 180
K +N+WDVP+W+P+LT +TFG+S +GIAYG+LS +LDP K +LFG ++ ++NWVEMWK
Sbjct: 121 KDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 167
Query: 181 EE 183
E+
Sbjct: 181 ED 167
BLAST of Lag0020061 vs. ExPASy Swiss-Prot
Match: O49668 (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 2.9e-17 Identity = 57/175 (32.57%), Postives = 88/175 (50.29%), Query Frame = 0
Query: 25 RINDSTLTKNLSNFTITSRRQIQLNA---------KGFTGSSATAKDRETAAEKLSGQNS 84
R+ D T ++ + T +R +I A KGF K +++ K Q+
Sbjct: 33 RLRDKTKSQVPKSITCINRLEISRIAPLHATMNSPKGF--GPPPKKTKKSKKPKPGNQSD 92
Query: 85 SKDDGGDYDDE----------IPEAVAKRIITRILAFVGIPMAFGVTLLKIFEAIKVQNL 144
DD D DD+ IPE V R+I+R+ VG+P+ G+ F +KV
Sbjct: 93 EDDDDEDEDDDDEEDERERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLK 152
Query: 145 WDVPIWLPFLTIFLTFGASTMGIAYGTLSASLDPEKEGTLFGWEQVEKNWVEMWK 181
DVP W+PF+ F+ FG + G++YG +S+S DP +EG+L GW + +KNW W+
Sbjct: 153 VDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQ 205
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023541387.1 | 4.6e-81 | 83.16 | uncharacterized protein PAM68-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG7013265.1 | 6.0e-81 | 84.21 | putative protein PAM68-like protein, partial [Cucurbita argyrosperma subsp. argy... | [more] |
| XP_022944901.1 | 7.9e-81 | 83.68 | uncharacterized protein PAM68-like [Cucurbita moschata] | [more] |
| KAG6574203.1 | 1.3e-80 | 83.77 | putative protein PAM68-like protein, partial [Cucurbita argyrosperma subsp. soro... | [more] |
| XP_022968628.1 | 2.5e-79 | 83.68 | uncharacterized protein PAM68-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9LTD9 | 3.7e-25 | 36.81 | Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ... | [more] |
| O49668 | 2.9e-17 | 32.57 | Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1 | [more] |
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR021855 | PAM68-like | PFAM | PF11947 | DUF3464 | coord: 60..181
e-value: 1.8E-38
score: 131.6 |
| IPR021855 | PAM68-like | PANTHER | PTHR34575 | PROTEIN PAM68, CHLOROPLASTIC | coord: 1..186 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 57..83 |
| None | No IPR available | PANTHER | PTHR34575:SF6 | EXPRESSED PROTEIN | coord: 1..186 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
|
