Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCTGGTCGTTGCGCAGCTTGTAAGTATTTGAGAAGAAGATGCCCTTCCGATTGCATTTTTTCCCCTTTCTTTCCTTCCAATAACCCTCTAAGATTTTCCATTGTTCATCGAATCTATGGTGCCAGCAATGTCGCTAAATTCCTCCATGTAAGTCCATATAATCTTTTTTCCTATGCTTTATTAATAAACCAACTCTTCAAATAATGAATTTTAAATTTATTAACTCTCTTTCTGTTTTTTTTTTTTTTTTTTTTTGGTTAATTTAATCAGCAACTTCCTGTGCATCTACGAGCTGAAGCAGCAGAAACGTTGTTTTTTGAGGCGAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTTGGGATTATTTCTCAATTGCAACATCAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTTTTGTGGCTTCCAATGTCCTAGAAGCTCAAGCCCAAGATTTCGCAATTGAGCCCATGCAAGGCCCAAATAGTATTGGGCTCTCTCATTTTGGGCTTTCCACTCCAGCTTATTGGTTTAATTCCAGCTTTTCTAATTTCTAA
mRNA sequence
ATGATTTCTGGTCGTTGCGCAGCTTGTAAGTATTTGAGAAGAAGATGCCCTTCCGATTGCATTTTTTCCCCTTTCTTTCCTTCCAATAACCCTCTAAGATTTTCCATTGTTCATCGAATCTATGGTGCCAGCAATGTCGCTAAATTCCTCCATCAACTTCCTGTGCATCTACGAGCTGAAGCAGCAGAAACGTTGTTTTTTGAGGCGAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTTGGGATTATTTCTCAATTGCAACATCAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTTTTGTGGCTTCCAATGTCCTAGAAGCTCAAGCCCAAGATTTCGCAATTGAGCCCATGCAAGGCCCAAATAGTATTGGGCTCTCTCATTTTGGGCTTTCCACTCCAGCTTATTGGTTTAATTCCAGCTTTTCTAATTTCTAA
Coding sequence (CDS)
ATGATTTCTGGTCGTTGCGCAGCTTGTAAGTATTTGAGAAGAAGATGCCCTTCCGATTGCATTTTTTCCCCTTTCTTTCCTTCCAATAACCCTCTAAGATTTTCCATTGTTCATCGAATCTATGGTGCCAGCAATGTCGCTAAATTCCTCCATCAACTTCCTGTGCATCTACGAGCTGAAGCAGCAGAAACGTTGTTTTTTGAGGCGAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTTGGGATTATTTCTCAATTGCAACATCAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTTTTGTGGCTTCCAATGTCCTAGAAGCTCAAGCCCAAGATTTCGCAATTGAGCCCATGCAAGGCCCAAATAGTATTGGGCTCTCTCATTTTGGGCTTTCCACTCCAGCTTATTGGTTTAATTCCAGCTTTTCTAATTTCTAA
Protein sequence
MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDFAIEPMQGPNSIGLSHFGLSTPAYWFNSSFSNF
Homology
BLAST of Lag0019983 vs. NCBI nr
Match:
XP_023522202.1 (LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 277.7 bits (709), Expect = 5.9e-71
Identity = 131/147 (89.12%), Postives = 140/147 (95.24%), Query Frame = 0
Query: 1 MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
MISGRCAACKYLRRRCPSDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLP+HLR E
Sbjct: 1 MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPE 60
Query: 61 AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 120
AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAF+ASN+ EAQ QDF
Sbjct: 61 AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQPQDF 120
Query: 121 AIEPMQGPNSIGLSHFGLSTPAYWFNS 148
A++P+QGPN+IG S GLSTPA+WFNS
Sbjct: 121 AVQPIQGPNTIGFSQIGLSTPAHWFNS 147
BLAST of Lag0019983 vs. NCBI nr
Match:
XP_022985104.1 (LOB domain-containing protein 24-like [Cucurbita maxima])
HSP 1 Score: 277.3 bits (708), Expect = 7.7e-71
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 0
Query: 1 MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
MISGRCAACKYLRRRCPSDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLPVHLRAE
Sbjct: 1 MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPVHLRAE 60
Query: 61 AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNV-LEAQAQD 120
AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAF+ASN+ EAQ QD
Sbjct: 61 AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLHQEAQPQD 120
Query: 121 FAIEPMQGPNSIGLSHFGLSTPAYWFNS 148
FA+EP+QGPN+IG S GLSTPA+WFNS
Sbjct: 121 FAVEPIQGPNTIGFSQIGLSTPAHWFNS 148
BLAST of Lag0019983 vs. NCBI nr
Match:
KAG7014789.1 (LOB domain-containing protein 24, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 275.4 bits (703), Expect = 2.9e-70
Identity = 130/147 (88.44%), Postives = 139/147 (94.56%), Query Frame = 0
Query: 1 MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
MISGRCAACKYLRRRCPSDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLPVHLR E
Sbjct: 1 MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPVHLRPE 60
Query: 61 AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 120
AAE+LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAF+ASN+ EAQ DF
Sbjct: 61 AAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQLHDF 120
Query: 121 AIEPMQGPNSIGLSHFGLSTPAYWFNS 148
A++P+QGPN+IG S GLSTPA+WFNS
Sbjct: 121 AVQPIQGPNTIGFSQIGLSTPAHWFNS 147
BLAST of Lag0019983 vs. NCBI nr
Match:
XP_022923144.1 (LOB domain-containing protein 24-like [Cucurbita moschata])
HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 128/147 (87.07%), Postives = 137/147 (93.20%), Query Frame = 0
Query: 1 MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
MISGRCAACKYLRRRC SDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLP+HLR E
Sbjct: 1 MISGRCAACKYLRRRCASDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPE 60
Query: 61 AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 120
AAE+LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAF+ASN+ EAQ DF
Sbjct: 61 AAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQPHDF 120
Query: 121 AIEPMQGPNSIGLSHFGLSTPAYWFNS 148
A +P+QGPN+IG S GLSTPA+WFNS
Sbjct: 121 AAQPIQGPNTIGFSQIGLSTPAHWFNS 147
BLAST of Lag0019983 vs. NCBI nr
Match:
XP_004140854.1 (LOB domain-containing protein 24 [Cucumis sativus] >KGN57342.1 hypothetical protein Csa_009713 [Cucumis sativus])
HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 0
Query: 1 MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
MISGRCAACKYLRRRCPSDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLP HLRAE
Sbjct: 1 MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
Query: 61 AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLE-AQAQD 120
AAETL FEAKCRIEDPVYGCVGIISQLQH+LHVAETQLAKTRAEIA VASNV E Q QD
Sbjct: 61 AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
Query: 121 FAIEPMQGPNSIGLSHFGLSTPAYWFNSSF 150
FA EP+QGPNS+G S GLSTPA+ FNS+F
Sbjct: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTF 150
BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match:
P59468 (LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 5.3e-38
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = 0
Query: 5 RCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAET 64
RCAACKYLRRRCP DC+FSP+FP N+P +F+ VHRIYGA NV+K L QLP RAEA E+
Sbjct: 5 RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64
Query: 65 LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 121
L FEAKCR++DPVYGCVGII L+ Q+ + +LAKT+AEIA + + + Q DF
Sbjct: 65 LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQNSDF 120
BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match:
P59467 (LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 1.5e-37
Identity = 71/116 (61.21%), Postives = 88/116 (75.86%), Query Frame = 0
Query: 5 RCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAET 64
RCAACKYLRRRCP DC+FSP+FP N+P +F+ VHRIYGA NV+K L QLP RAEA E+
Sbjct: 5 RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64
Query: 65 LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 121
L FEAKCR++DPVYGCVGII L+ Q+ + +LAKT+AEIA + + + DF
Sbjct: 65 LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTHISDF 120
BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match:
Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)
HSP 1 Score: 133.7 bits (335), Expect = 1.8e-30
Identity = 71/164 (43.29%), Postives = 102/164 (62.20%), Query Frame = 0
Query: 3 SGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAA 62
S CA+CK LRRRC DCIF+P+FP ++P +F+IVH+++GASNV+K L +LPVH RA+A
Sbjct: 6 SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65
Query: 63 ETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFV-ASNVLEAQAQDFA 122
+L FEA R+ DPVYGCVG IS LQ+Q+ + QLA +AEI + N Q+
Sbjct: 66 NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQV 125
Query: 123 IEPMQGPNSIGL--------------SHFGLSTPAYWFNSSFSN 152
+E Q ++ L ++FG + + FNS+F++
Sbjct: 126 LELDQDHKALLLNNNNINNCNTNNNNNNFGYAMSSGQFNSNFAS 169
BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match:
Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 6.9e-30
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 0
Query: 6 CAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAETL 65
CAACK LRRRC DC+FSP+FP++ P +F+ VHR++GASNV K L +LP+H R +A ++
Sbjct: 14 CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73
Query: 66 FFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEI 106
+EA R+ DPVYGCVG IS LQ Q+ V + QLA +AE+
Sbjct: 74 VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113
BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match:
Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)
HSP 1 Score: 123.6 bits (309), Expect = 1.9e-27
Identity = 53/100 (53.00%), Postives = 76/100 (76.00%), Query Frame = 0
Query: 6 CAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAETL 65
CAACK+LRR+C SDC+F+P+FP P +F+ VHRI+GASNV+K LH++ H R +A +L
Sbjct: 40 CAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSL 99
Query: 66 FFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEI 106
+EA+ R++DPVYGCVG IS LQ Q+ + +L +T A++
Sbjct: 100 AYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADL 139
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_023522202.1 | 5.9e-71 | 89.12 | LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022985104.1 | 7.7e-71 | 90.54 | LOB domain-containing protein 24-like [Cucurbita maxima] | [more] |
KAG7014789.1 | 2.9e-70 | 88.44 | LOB domain-containing protein 24, partial [Cucurbita argyrosperma subsp. argyros... | [more] |
XP_022923144.1 | 1.6e-68 | 87.07 | LOB domain-containing protein 24-like [Cucurbita moschata] | [more] |
XP_004140854.1 | 1.4e-67 | 87.33 | LOB domain-containing protein 24 [Cucumis sativus] >KGN57342.1 hypothetical prot... | [more] |
Match Name | E-value | Identity | Description | |
P59468 | 5.3e-38 | 62.07 | LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 S... | [more] |
P59467 | 1.5e-37 | 61.21 | LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 S... | [more] |
Q8LBW3 | 1.8e-30 | 43.29 | LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... | [more] |
Q9SHE9 | 6.9e-30 | 56.00 | LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... | [more] |
Q8L8Q3 | 1.9e-27 | 53.00 | LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S... | [more] |