Lag0019983 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019983
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLOB domain-containing protein
Locationchr5: 47162336 .. 47162917 (+)
RNA-Seq ExpressionLag0019983
SyntenyLag0019983
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCTGGTCGTTGCGCAGCTTGTAAGTATTTGAGAAGAAGATGCCCTTCCGATTGCATTTTTTCCCCTTTCTTTCCTTCCAATAACCCTCTAAGATTTTCCATTGTTCATCGAATCTATGGTGCCAGCAATGTCGCTAAATTCCTCCATGTAAGTCCATATAATCTTTTTTCCTATGCTTTATTAATAAACCAACTCTTCAAATAATGAATTTTAAATTTATTAACTCTCTTTCTGTTTTTTTTTTTTTTTTTTTTTGGTTAATTTAATCAGCAACTTCCTGTGCATCTACGAGCTGAAGCAGCAGAAACGTTGTTTTTTGAGGCGAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTTGGGATTATTTCTCAATTGCAACATCAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTTTTGTGGCTTCCAATGTCCTAGAAGCTCAAGCCCAAGATTTCGCAATTGAGCCCATGCAAGGCCCAAATAGTATTGGGCTCTCTCATTTTGGGCTTTCCACTCCAGCTTATTGGTTTAATTCCAGCTTTTCTAATTTCTAA

mRNA sequence

ATGATTTCTGGTCGTTGCGCAGCTTGTAAGTATTTGAGAAGAAGATGCCCTTCCGATTGCATTTTTTCCCCTTTCTTTCCTTCCAATAACCCTCTAAGATTTTCCATTGTTCATCGAATCTATGGTGCCAGCAATGTCGCTAAATTCCTCCATCAACTTCCTGTGCATCTACGAGCTGAAGCAGCAGAAACGTTGTTTTTTGAGGCGAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTTGGGATTATTTCTCAATTGCAACATCAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTTTTGTGGCTTCCAATGTCCTAGAAGCTCAAGCCCAAGATTTCGCAATTGAGCCCATGCAAGGCCCAAATAGTATTGGGCTCTCTCATTTTGGGCTTTCCACTCCAGCTTATTGGTTTAATTCCAGCTTTTCTAATTTCTAA

Coding sequence (CDS)

ATGATTTCTGGTCGTTGCGCAGCTTGTAAGTATTTGAGAAGAAGATGCCCTTCCGATTGCATTTTTTCCCCTTTCTTTCCTTCCAATAACCCTCTAAGATTTTCCATTGTTCATCGAATCTATGGTGCCAGCAATGTCGCTAAATTCCTCCATCAACTTCCTGTGCATCTACGAGCTGAAGCAGCAGAAACGTTGTTTTTTGAGGCGAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTTGGGATTATTTCTCAATTGCAACATCAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTTTTGTGGCTTCCAATGTCCTAGAAGCTCAAGCCCAAGATTTCGCAATTGAGCCCATGCAAGGCCCAAATAGTATTGGGCTCTCTCATTTTGGGCTTTCCACTCCAGCTTATTGGTTTAATTCCAGCTTTTCTAATTTCTAA

Protein sequence

MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDFAIEPMQGPNSIGLSHFGLSTPAYWFNSSFSNF
Homology
BLAST of Lag0019983 vs. NCBI nr
Match: XP_023522202.1 (LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.7 bits (709), Expect = 5.9e-71
Identity = 131/147 (89.12%), Postives = 140/147 (95.24%), Query Frame = 0

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLP+HLR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 120
           AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAF+ASN+ EAQ QDF
Sbjct: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQPQDF 120

Query: 121 AIEPMQGPNSIGLSHFGLSTPAYWFNS 148
           A++P+QGPN+IG S  GLSTPA+WFNS
Sbjct: 121 AVQPIQGPNTIGFSQIGLSTPAHWFNS 147

BLAST of Lag0019983 vs. NCBI nr
Match: XP_022985104.1 (LOB domain-containing protein 24-like [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 7.7e-71
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 0

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLPVHLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPVHLRAE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNV-LEAQAQD 120
           AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAF+ASN+  EAQ QD
Sbjct: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLHQEAQPQD 120

Query: 121 FAIEPMQGPNSIGLSHFGLSTPAYWFNS 148
           FA+EP+QGPN+IG S  GLSTPA+WFNS
Sbjct: 121 FAVEPIQGPNTIGFSQIGLSTPAHWFNS 148

BLAST of Lag0019983 vs. NCBI nr
Match: KAG7014789.1 (LOB domain-containing protein 24, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.4 bits (703), Expect = 2.9e-70
Identity = 130/147 (88.44%), Postives = 139/147 (94.56%), Query Frame = 0

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLPVHLR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPVHLRPE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 120
           AAE+LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAF+ASN+ EAQ  DF
Sbjct: 61  AAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQLHDF 120

Query: 121 AIEPMQGPNSIGLSHFGLSTPAYWFNS 148
           A++P+QGPN+IG S  GLSTPA+WFNS
Sbjct: 121 AVQPIQGPNTIGFSQIGLSTPAHWFNS 147

BLAST of Lag0019983 vs. NCBI nr
Match: XP_022923144.1 (LOB domain-containing protein 24-like [Cucurbita moschata])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 128/147 (87.07%), Postives = 137/147 (93.20%), Query Frame = 0

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
           MISGRCAACKYLRRRC SDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLP+HLR E
Sbjct: 1   MISGRCAACKYLRRRCASDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 120
           AAE+LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAF+ASN+ EAQ  DF
Sbjct: 61  AAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQPHDF 120

Query: 121 AIEPMQGPNSIGLSHFGLSTPAYWFNS 148
           A +P+QGPN+IG S  GLSTPA+WFNS
Sbjct: 121 AAQPIQGPNTIGFSQIGLSTPAHWFNS 147

BLAST of Lag0019983 vs. NCBI nr
Match: XP_004140854.1 (LOB domain-containing protein 24 [Cucumis sativus] >KGN57342.1 hypothetical protein Csa_009713 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 0

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNP RF+IVHRIYGASNVAKFLHQLP HLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLE-AQAQD 120
           AAETL FEAKCRIEDPVYGCVGIISQLQH+LHVAETQLAKTRAEIA VASNV E  Q QD
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 FAIEPMQGPNSIGLSHFGLSTPAYWFNSSF 150
           FA EP+QGPNS+G S  GLSTPA+ FNS+F
Sbjct: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTF 150

BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match: P59468 (LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.3e-38
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = 0

Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+P +F+ VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 121
           L FEAKCR++DPVYGCVGII  L+ Q+   + +LAKT+AEIA   + + + Q  DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQNSDF 120

BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match: P59467 (LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-37
Identity = 71/116 (61.21%), Postives = 88/116 (75.86%), Query Frame = 0

Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+P +F+ VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFVASNVLEAQAQDF 121
           L FEAKCR++DPVYGCVGII  L+ Q+   + +LAKT+AEIA   + + +    DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTHISDF 120

BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-30
Identity = 71/164 (43.29%), Postives = 102/164 (62.20%), Query Frame = 0

Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAA 62
           S  CA+CK LRRRC  DCIF+P+FP ++P +F+IVH+++GASNV+K L +LPVH RA+A 
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 63  ETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFV-ASNVLEAQAQDFA 122
            +L FEA  R+ DPVYGCVG IS LQ+Q+   + QLA  +AEI  +   N    Q+    
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQV 125

Query: 123 IEPMQGPNSIGL--------------SHFGLSTPAYWFNSSFSN 152
           +E  Q   ++ L              ++FG +  +  FNS+F++
Sbjct: 126 LELDQDHKALLLNNNNINNCNTNNNNNNFGYAMSSGQFNSNFAS 169

BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-30
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 0

Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAETL 65
           CAACK LRRRC  DC+FSP+FP++ P +F+ VHR++GASNV K L +LP+H R +A  ++
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 66  FFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEI 106
            +EA  R+ DPVYGCVG IS LQ Q+ V + QLA  +AE+
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113

BLAST of Lag0019983 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-27
Identity = 53/100 (53.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPLRFSIVHRIYGASNVAKFLHQLPVHLRAEAAETL 65
           CAACK+LRR+C SDC+F+P+FP   P +F+ VHRI+GASNV+K LH++  H R +A  +L
Sbjct: 40  CAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSL 99

Query: 66  FFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEI 106
            +EA+ R++DPVYGCVG IS LQ Q+   + +L +T A++
Sbjct: 100 AYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADL 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023522202.15.9e-7189.12LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo][more]
XP_022985104.17.7e-7190.54LOB domain-containing protein 24-like [Cucurbita maxima][more]
KAG7014789.12.9e-7088.44LOB domain-containing protein 24, partial [Cucurbita argyrosperma subsp. argyros... [more]
XP_022923144.11.6e-6887.07LOB domain-containing protein 24-like [Cucurbita moschata][more]
XP_004140854.11.4e-6787.33LOB domain-containing protein 24 [Cucumis sativus] >KGN57342.1 hypothetical prot... [more]
Match NameE-valueIdentityDescription
P594685.3e-3862.07LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 S... [more]
P594671.5e-3761.21LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 S... [more]
Q8LBW31.8e-3043.29LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... [more]
Q9SHE96.9e-3056.00LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... [more]
Q8L8Q31.9e-2753.00LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 84..104
NoneNo IPR availablePANTHERPTHR31301:SF120LOB DOMAIN-CONTAINING PROTEIN 23-RELATEDcoord: 1..117
NoneNo IPR availablePANTHERPTHR31301LOB DOMAIN-CONTAINING PROTEIN 4-RELATEDcoord: 1..117
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 5..102
e-value: 1.9E-37
score: 127.8
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 4..105
score: 23.61237

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019983.1Lag0019983.1mRNA