Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCATTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAGCCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTGCAGGAGCAGGCAAGTTTGA
mRNA sequence
ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCATTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAGCCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTGCAGGAGCAGGCAAGTTTGA
Coding sequence (CDS)
ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCATTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAGCCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTGCAGGAGCAGGCAAGTTTGA
Protein sequence
MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSRQV
Homology
BLAST of Lag0019980 vs. NCBI nr
Match:
XP_022968022.1 (traB domain-containing protein isoform X1 [Cucurbita maxima])
HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62
Identity = 130/150 (86.67%), Postives = 135/150 (90.00%), Query Frame = 0
Query: 1 MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
MAVKA FFLSS SSMEALKS AIPIFRPYPVSIPTKS+KPTKVSIRPPPS F
Sbjct: 1 MAVKAPFFFLSS--------SSMEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDF 60
Query: 61 DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
DFR+E+SRDSRAAI EAHPELLDL DDGTLVLVEKRRFGPVPAWR+EFVEPEAIWL+ TS
Sbjct: 61 DFRVELSRDSRAAIAEAHPELLDLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATS 120
Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 142
BLAST of Lag0019980 vs. NCBI nr
Match:
XP_023542003.1 (traB domain-containing protein isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 244.2 bits (622), Expect = 7.3e-61
Identity = 128/150 (85.33%), Postives = 132/150 (88.00%), Query Frame = 0
Query: 1 MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
MAVKA FFLSS SSMEALKS AIPIFRPYP SI TKS+KP KVSIRPPPS F
Sbjct: 1 MAVKATFFFLSS--------SSMEALKSTAIPIFRPYPFSIATKSMKPIKVSIRPPPSDF 60
Query: 61 DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
DFR+EISRDSRAAI EAHPELLDL DDGTLVLVEKRRFGPVPAWR+EFVEPEAIWL+ TS
Sbjct: 61 DFRVEISRDSRAAIAEAHPELLDLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATS 120
Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 142
BLAST of Lag0019980 vs. NCBI nr
Match:
KAE8650450.1 (hypothetical protein Csa_011235 [Cucumis sativus])
HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 125/150 (83.33%), Postives = 133/150 (88.67%), Query Frame = 0
Query: 1 MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
MAVK RSFFLSS S S SL+SSMEALKS AIPIF+ P+S PTKSLKP VSI PPPS F
Sbjct: 1 MAVKGRSFFLSSSSPSISLLSSMEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDF 60
Query: 61 DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
DFRLEISRDSRA I E HPELLDLADDG LVLV+K +FGPVPAWR+EFVEP+AIWL+GTS
Sbjct: 61 DFRLEISRDSRATIAETHPELLDLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTS 120
Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 150
BLAST of Lag0019980 vs. NCBI nr
Match:
XP_004140793.1 (traB domain-containing protein isoform X1 [Cucumis sativus])
HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 125/150 (83.33%), Postives = 133/150 (88.67%), Query Frame = 0
Query: 1 MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
MAVK RSFFLSS S S SL+SSMEALKS AIPIF+ P+S PTKSLKP VSI PPPS F
Sbjct: 1 MAVKGRSFFLSSSSPSISLLSSMEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDF 60
Query: 61 DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
DFRLEISRDSRA I E HPELLDLADDG LVLV+K +FGPVPAWR+EFVEP+AIWL+GTS
Sbjct: 61 DFRLEISRDSRATIAETHPELLDLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTS 120
Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 150
BLAST of Lag0019980 vs. NCBI nr
Match:
XP_022945049.1 (traB domain-containing protein isoform X1 [Cucurbita moschata])
HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59
Identity = 126/150 (84.00%), Postives = 131/150 (87.33%), Query Frame = 0
Query: 1 MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
MAVKA FFLSS SSME+LKS IPIFRPYP SI TKS+KP KVSIRPPPS F
Sbjct: 37 MAVKAPFFFLSS--------SSMESLKSTPIPIFRPYPFSIATKSVKPIKVSIRPPPSDF 96
Query: 61 DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
DFR+EISRDSRAAI EAHPELLDL DDGTLVLVEKRRFGPVPAWR+EFVEPEAIWL+ TS
Sbjct: 97 DFRVEISRDSRAAIAEAHPELLDLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATS 156
Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 157 HISPKSVKDVERVVRAVKPDNVVVELCRSR 178
BLAST of Lag0019980 vs. ExPASy Swiss-Prot
Match:
Q58DF3 (TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1)
HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 0
Query: 74 IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSV 133
++ P+ L D L+L +++RR P +P +E V + ++++GT+H S S
Sbjct: 29 VLPGDPQNLSDVDAFNLLLEMKLKRRRERPNLPHTVTELVAEDGSRVYVVGTAHFSDDSK 88
Query: 134 KDVERVVRAVKPDNVVVELCRSR 151
+DV + +R V+PD VVVELC+ R
Sbjct: 89 RDVVKTIREVQPDVVVVELCQYR 111
BLAST of Lag0019980 vs. ExPASy Swiss-Prot
Match:
Q9H4I3 (TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1)
HSP 1 Score: 46.2 bits (108), Expect = 3.8e-04
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 0
Query: 74 IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSV 133
++ P+ L D L+L +++RR P +P ++ V + ++++GT+H S S
Sbjct: 29 VLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSK 88
Query: 134 KDVERVVRAVKPDNVVVELCRSR 151
+DV + +R V+PD VVVELC+ R
Sbjct: 89 RDVVKTIREVQPDVVVVELCQYR 111
BLAST of Lag0019980 vs. ExPASy Swiss-Prot
Match:
Q99JY4 (TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1)
HSP 1 Score: 45.1 bits (105), Expect = 8.5e-04
Identity = 27/83 (32.53%), Postives = 49/83 (59.04%), Query Frame = 0
Query: 74 IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSV 133
++ P+ + D L+L +++RR P +P ++ V + ++++GT+H S S
Sbjct: 28 VLAGDPQNISDVDAFNLLLEMKLKRRRERPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSK 87
Query: 134 KDVERVVRAVKPDNVVVELCRSR 151
+DV + +R V+PD VVVELC+ R
Sbjct: 88 RDVVKTIREVQPDVVVVELCQYR 110
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022968022.1 | 1.0e-62 | 86.67 | traB domain-containing protein isoform X1 [Cucurbita maxima] | [more] |
XP_023542003.1 | 7.3e-61 | 85.33 | traB domain-containing protein isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
KAE8650450.1 | 1.2e-60 | 83.33 | hypothetical protein Csa_011235 [Cucumis sativus] | [more] |
XP_004140793.1 | 1.2e-60 | 83.33 | traB domain-containing protein isoform X1 [Cucumis sativus] | [more] |
XP_022945049.1 | 1.0e-59 | 84.00 | traB domain-containing protein isoform X1 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Q58DF3 | 2.9e-04 | 34.94 | TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1 | [more] |
Q9H4I3 | 3.8e-04 | 33.73 | TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1 | [more] |
Q99JY4 | 8.5e-04 | 32.53 | TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1 | [more] |