Lag0019980 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCATTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAGCCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTGCAGGAGCAGGCAAGTTTGA ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCATTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAGCCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTGCAGGAGCAGGCAAGTTTGA ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCATTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAGCCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTGCAGGAGCAGGCAAGTTTGA MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSRQV Homology
BLAST of Lag0019980 vs. NCBI nr
Match: XP_022968022.1 (traB domain-containing protein isoform X1 [Cucurbita maxima]) HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62 Identity = 130/150 (86.67%), Postives = 135/150 (90.00%), Query Frame = 0
BLAST of Lag0019980 vs. NCBI nr
Match: XP_023542003.1 (traB domain-containing protein isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 244.2 bits (622), Expect = 7.3e-61 Identity = 128/150 (85.33%), Postives = 132/150 (88.00%), Query Frame = 0
BLAST of Lag0019980 vs. NCBI nr
Match: KAE8650450.1 (hypothetical protein Csa_011235 [Cucumis sativus]) HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60 Identity = 125/150 (83.33%), Postives = 133/150 (88.67%), Query Frame = 0
BLAST of Lag0019980 vs. NCBI nr
Match: XP_004140793.1 (traB domain-containing protein isoform X1 [Cucumis sativus]) HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60 Identity = 125/150 (83.33%), Postives = 133/150 (88.67%), Query Frame = 0
BLAST of Lag0019980 vs. NCBI nr
Match: XP_022945049.1 (traB domain-containing protein isoform X1 [Cucurbita moschata]) HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59 Identity = 126/150 (84.00%), Postives = 131/150 (87.33%), Query Frame = 0
BLAST of Lag0019980 vs. ExPASy Swiss-Prot
Match: Q58DF3 (TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04 Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of Lag0019980 vs. ExPASy Swiss-Prot
Match: Q9H4I3 (TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.8e-04 Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of Lag0019980 vs. ExPASy Swiss-Prot
Match: Q99JY4 (TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 8.5e-04 Identity = 27/83 (32.53%), Postives = 49/83 (59.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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