Lag0018784 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0018784
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr5: 34299519 .. 34300570 (-)
RNA-Seq Expression	Lag0018784
Synteny	Lag0018784

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTACTGAAGGTGTTGGTGAGGAAGGCAAGGTTTTGCCGGCGGTGTTGTGGAGTGGTGAAGATGGTCGAGTAAGGGGTTGCAGTGTGTCGGTGAGTGGTGGTTTCACGAGCTTTGGTGGACGGTGCGGTGCGTTTTTTTCCTTAATCCTCTCTTTGGTTTCTCTTCACTCCTTTTGTTTTTCTGCTCCGTCTTTGTTTGGTTTTCTTGGTTTGCATGTGTTAGCAGTAAGAGGTGGAAGCGGAGCAGGGAGTTTGTGCGGTGGGTACTGTCTTGGTGAGAGTGGATGATGGAGGACTTGGAAAATAGATGGAGGTCATGGAAGTTGACGGAGGAGGAGGCGGAGAAGGTGAAGCCGGGGGATGTGGCGTCAGTCTTACCTGAGGGATCGAGGGAGCTTTGTGTGGTGGGGAAGGTGCTCTCGTCAAAGCGTGTGAATATGGATGCTTTCCGAAATGTGATGAGAGCAGCGTGGAGAACACACGGGGTGACTCGGATTGAAGCGGCGAGGGATAATTTGTTTGCGGTCCAGTTTTGGTCTAAAGTGGAGAAGGTTAGAGTTATGTCGTCAGGGCCGTGGGCTTTTGATAGATCCCTTGTGATACTAAAGGATGTGCAGTCGGTTTCGTCAGTTTTAGATGTGGAGTTTAGGGAGTGTTCCTTCTGGGTCCAGATTCATAATGTCCCCATGCGATGGCAGACGAGGGGAATGGCAAAGCACTTGGGAGGGAAGATTGGGGTAGTTGAAGAAATAGGTGGGACGCAAGGGGGCGAGTGGACAGGACCATTGCTGAGGCTGAGAGTGTGTCTACGGGTAGATCGACCCCTTCGAAGAGGTTTTCAGATGCAGGATGAGGATGATAGGGAGTTCTGGTGCTCAGTGCTGTATGAACAGCTACCAGATTTTTGTTATGTGTGTGGTTGCCTGGGGCACTCGAGGAGGGAGTGCGATGTAGTGGGTGATGGTACGAGGGCGCAAGTGGGTGAGCAGTATGGTGATTGTGAAGGGATAATAGCCCTTGCGCAGCGGAAAAACGTACAGAACCTTTAA

mRNA sequence

ATGAGTACTGAAGGTGTTGGTGAGGAAGGCAAGGTTTTGCCGGCGGTGTTGTGGAGTGGTGAAGATGGTCGAGTAAGGGGTTGCAGTGTGTCGGTGAGTGGTGGTTTCACGAGCTTTGGTGGACGATGGAGGTCATGGAAGTTGACGGAGGAGGAGGCGGAGAAGGTGAAGCCGGGGGATGTGGCGTCAGTCTTACCTGAGGGATCGAGGGAGCTTTGTGTGGTGGGGAAGGTGCTCTCGTCAAAGCGTGTGAATATGGATGCTTTCCGAAATGTGATGAGAGCAGCGTGGAGAACACACGGGGTGACTCGGATTGAAGCGGCGAGGGATAATTTGTTTGCGGTCCAGTTTTGGTCTAAAGTGGAGAAGGTTAGAGTTATGTCGTCAGGGCCGTGGGCTTTTGATAGATCCCTTGTGATACTAAAGGATGTGCAGTCGGTTTCGTCAGTTTTAGATGTGGAGTTTAGGGAGTGTTCCTTCTGGGTCCAGATTCATAATGTCCCCATGCGATGGCAGACGAGGGGAATGGCAAAGCACTTGGGAGGGAAGATTGGGGTAGTTGAAGAAATAGGTGGGACGCAAGGGGGCGAGTGGACAGGACCATTGCTGAGGCTGAGAGTGTGTCTACGGGTAGATCGACCCCTTCGAAGAGGTTTTCAGATGCAGGATGAGGATGATAGGGAGTTCTGGTGCTCAGTGCTGTATGAACAGCTACCAGATTTTTGTTATGTGTGTGGTTGCCTGGGGCACTCGAGGAGGGAGTGCGATGTAGTGGGTGATGGTACGAGGGCGCAAGTGGGTGAGCAGTATGGTGATTGTGAAGGGATAATAGCCCTTGCGCAGCGGAAAAACGTACAGAACCTTTAA

Coding sequence (CDS)

ATGAGTACTGAAGGTGTTGGTGAGGAAGGCAAGGTTTTGCCGGCGGTGTTGTGGAGTGGTGAAGATGGTCGAGTAAGGGGTTGCAGTGTGTCGGTGAGTGGTGGTTTCACGAGCTTTGGTGGACGATGGAGGTCATGGAAGTTGACGGAGGAGGAGGCGGAGAAGGTGAAGCCGGGGGATGTGGCGTCAGTCTTACCTGAGGGATCGAGGGAGCTTTGTGTGGTGGGGAAGGTGCTCTCGTCAAAGCGTGTGAATATGGATGCTTTCCGAAATGTGATGAGAGCAGCGTGGAGAACACACGGGGTGACTCGGATTGAAGCGGCGAGGGATAATTTGTTTGCGGTCCAGTTTTGGTCTAAAGTGGAGAAGGTTAGAGTTATGTCGTCAGGGCCGTGGGCTTTTGATAGATCCCTTGTGATACTAAAGGATGTGCAGTCGGTTTCGTCAGTTTTAGATGTGGAGTTTAGGGAGTGTTCCTTCTGGGTCCAGATTCATAATGTCCCCATGCGATGGCAGACGAGGGGAATGGCAAAGCACTTGGGAGGGAAGATTGGGGTAGTTGAAGAAATAGGTGGGACGCAAGGGGGCGAGTGGACAGGACCATTGCTGAGGCTGAGAGTGTGTCTACGGGTAGATCGACCCCTTCGAAGAGGTTTTCAGATGCAGGATGAGGATGATAGGGAGTTCTGGTGCTCAGTGCTGTATGAACAGCTACCAGATTTTTGTTATGTGTGTGGTTGCCTGGGGCACTCGAGGAGGGAGTGCGATGTAGTGGGTGATGGTACGAGGGCGCAAGTGGGTGAGCAGTATGGTGATTGTGAAGGGATAATAGCCCTTGCGCAGCGGAAAAACGTACAGAACCTTTAA

Protein sequence

MSTEGVGEEGKVLPAVLWSGEDGRVRGCSVSVSGGFTSFGGRWRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECDVVGDGTRAQVGEQYGDCEGIIALAQRKNVQNL

Homology

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BLAST of Lag0018784 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 216.1 bits (549), Expect = 4.0e-52
Identity = 99/230 (43.04%), Postives = 142/230 (61.74%), Query Frame = 0


Query: 43  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGV 102
           W  +K T +E E V       +L   + +LCVV K+ +SKR++ +A R+VM++ WR H  
Sbjct: 8   WEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKSVWRVHNS 67

Query: 103 TRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWV 162
           TR E    N++ + F S  EK RV+SSGPW F++SL++L    + +  LD+ F  C+FW+
Sbjct: 68  TRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNFNFCAFWI 127

Query: 163 QIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQ 222
           QIHN+P    +  MA  LG K+G VEEI G     W GP +R+RV + V +PLRRG +++
Sbjct: 128 QIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKLK 187

Query: 223 DEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECDVVGDGTRAQVGEQYGD 273
           + D ++ WC + YE+LPDFCY CG +GHS REC+           EQYGD
Sbjct: 188 NSDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGD 237

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BLAST of Lag0018784 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 206.5 bits (524), Expect = 3.2e-49
Identity = 90/212 (42.45%), Postives = 135/212 (63.68%), Query Frame = 0


Query: 43  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGV 102
           W ++ L +EE + +   +   +L   + +LC VGK+  SKR+ ++AF +VM+  W+ H  
Sbjct: 8   WENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQVWKIHNS 67

Query: 103 TRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWV 162
           TRIE A  N++ + F +  EK+RV S GPW FD+SL+IL    + +  LD++   C+FWV
Sbjct: 68  TRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDISLCAFWV 127

Query: 163 QIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQ 222
           QIH +     T+ MAK LG ++G VEE+ G    +W  P L +RV + V +PLRRG +++
Sbjct: 128 QIHYITFECMTKDMAKFLGARLGEVEEVDGMSSYDWVRPFLWVRVKINVLKPLRRGLKVK 187

Query: 223 DEDDREFWCSVLYEQLPDFCYVCGCLGHSRRE 255
             D ++ WC + YE+LPDFCY CGC+GHS RE
Sbjct: 188 TSDGKDIWCPLRYERLPDFCYGCGCVGHSIRE 219

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BLAST of Lag0018784 vs. NCBI nr
Match: OMP03234.1 (hypothetical protein COLO4_10561 [Corchorus olitorius])

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-41
Identity = 89/233 (38.20%), Postives = 138/233 (59.23%), Query Frame = 0


Query: 43  WRSWKLTEEEAEK--VKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTH 102
           W ++ LT+EE  +  V    VA  L EG  +LC++GK+LS + VN+D  RNV+   W+  
Sbjct: 9   WENFNLTKEETMEMAVNHTMVAESLAEG--KLCLIGKLLSRRAVNIDVMRNVLHMVWKLS 68

Query: 103 GVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSF 162
           G  ++    + L+  QF S+VEK RV   GPW F+++L++LK+  +  SV +++   C+F
Sbjct: 69  GGLQVREIGEKLYIFQFESEVEKERVYQQGPWNFNKALLVLKNYDAFISVEEIKLEWCAF 128

Query: 163 WVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQ 222
           W+Q+H++P+ + T  + K +G   G V EI         G  LR+R CL V++PLRRG  
Sbjct: 129 WIQVHDLPLGFMTESVGKAIGDSFGEVIEIDTCGDKVAWGKFLRIRACLNVNKPLRRGMI 188

Query: 223 MQDEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG 272
           +   +  +   S  YE+LPDFCYVCGCL H+  EC+  V+      +V ++YG
Sbjct: 189 LTAPNGGKILVSFRYEKLPDFCYVCGCLNHTENECEKAVIMRRDSGKVKKEYG 239

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BLAST of Lag0018784 vs. NCBI nr
Match: XP_024033132.1 (uncharacterized protein LOC112095437 [Citrus clementina])

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-38
Identity = 78/211 (36.97%), Postives = 130/211 (61.61%), Query Frame = 0


Query: 48  LTEEEAEK-VKPGDVASVLPEGSREL--CVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTR 107
           L  EEA+K +  G +     +GS+ +  C+VGK+L ++ VN +  +  +  AWRT    +
Sbjct: 15  LEGEEADKFIFAGQMKE---KGSKAVAGCLVGKILLARGVNREGLKTALDQAWRTVHDFK 74

Query: 108 IEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWVQI 167
           +E+   N+F  +F S+ +K RV + GPW FDR+L++L++ + + S+    F   SFW++I
Sbjct: 75  VESLGSNIFVFKFLSEADKKRVFNGGPWHFDRALMVLQEPKGIGSIKKQSFSHVSFWIRI 134

Query: 168 HNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDE 227
           HNVP+      + + LG ++G VE+IG    GE  G  +R++V + + +PL++   ++ E
Sbjct: 135 HNVPLMCMDTSIIRELGSRVGKVEDIGMDAQGECFGEFVRIQVSVNITKPLKKLIVLKQE 194

Query: 228 DDREFWCSVLYEQLPDFCYVCGCLGHSRREC 256
           DD +    V+YE+LPDFC+ CGC+GH  REC
Sbjct: 195 DDEDIPLPVVYERLPDFCFCCGCIGHQFREC 222

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BLAST of Lag0018784 vs. NCBI nr
Match: OMO61345.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-37
Identity = 88/233 (37.77%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 43  WRSWKLTEEE--AEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTH 102
           W ++ LTEEE     V P  V   L EG+   C++GK+LS + VN++  RNVM   W+  
Sbjct: 9   WENFNLTEEENLEVAVDPRLVDETLAEGNN--CLIGKLLSRRPVNVEVMRNVMHMVWKLA 68

Query: 103 GVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSF 162
           G  ++    +NLF  QF S +EK RV    PW F+++L++LK   +   V D++   CSF
Sbjct: 69  GGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIKLDGCSF 128

Query: 163 WVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQ 222
           W Q H++P+ +    + + +G   G VEEI         G  LR R  L V +PLRRG  
Sbjct: 129 WKQAHDLPLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVTKPLRRGMI 188

Query: 223 MQDEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG 272
           +   +  +   S  YE+LPDFCYVCGCL H   EC+  VV    + ++ ++YG
Sbjct: 189 LTAPNGGKILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIKEYG 239

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BLAST of Lag0018784 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-52
Identity = 99/230 (43.04%), Postives = 142/230 (61.74%), Query Frame = 0


Query: 43  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGV 102
           W  +K T +E E V       +L   + +LCVV K+ +SKR++ +A R+VM++ WR H  
Sbjct: 8   WEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKSVWRVHNS 67

Query: 103 TRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWV 162
           TR E    N++ + F S  EK RV+SSGPW F++SL++L    + +  LD+ F  C+FW+
Sbjct: 68  TRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNFNFCAFWI 127

Query: 163 QIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQ 222
           QIHN+P    +  MA  LG K+G VEEI G     W GP +R+RV + V +PLRRG +++
Sbjct: 128 QIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKLK 187

Query: 223 DEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECDVVGDGTRAQVGEQYGD 273
           + D ++ WC + YE+LPDFCY CG +GHS REC+           EQYGD
Sbjct: 188 NSDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGD 237

[Close]

BLAST of Lag0018784 vs. ExPASy TrEMBL
Match: A0A6J1DVS4 (uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023555 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 90/212 (42.45%), Postives = 135/212 (63.68%), Query Frame = 0


Query: 43  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGV 102
           W ++ L +EE + +   +   +L   + +LC VGK+  SKR+ ++AF +VM+  W+ H  
Sbjct: 8   WENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQVWKIHNS 67

Query: 103 TRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWV 162
           TRIE A  N++ + F +  EK+RV S GPW FD+SL+IL    + +  LD++   C+FWV
Sbjct: 68  TRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDISLCAFWV 127

Query: 163 QIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQ 222
           QIH +     T+ MAK LG ++G VEE+ G    +W  P L +RV + V +PLRRG +++
Sbjct: 128 QIHYITFECMTKDMAKFLGARLGEVEEVDGMSSYDWVRPFLWVRVKINVLKPLRRGLKVK 187

Query: 223 DEDDREFWCSVLYEQLPDFCYVCGCLGHSRRE 255
             D ++ WC + YE+LPDFCY CGC+GHS RE
Sbjct: 188 TSDGKDIWCPLRYERLPDFCYGCGCVGHSIRE 219

[Close]

BLAST of Lag0018784 vs. ExPASy TrEMBL
Match: A0A1R3K847 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10561 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.9e-42
Identity = 89/233 (38.20%), Postives = 138/233 (59.23%), Query Frame = 0


Query: 43  WRSWKLTEEEAEK--VKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTH 102
           W ++ LT+EE  +  V    VA  L EG  +LC++GK+LS + VN+D  RNV+   W+  
Sbjct: 9   WENFNLTKEETMEMAVNHTMVAESLAEG--KLCLIGKLLSRRAVNIDVMRNVLHMVWKLS 68

Query: 103 GVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSF 162
           G  ++    + L+  QF S+VEK RV   GPW F+++L++LK+  +  SV +++   C+F
Sbjct: 69  GGLQVREIGEKLYIFQFESEVEKERVYQQGPWNFNKALLVLKNYDAFISVEEIKLEWCAF 128

Query: 163 WVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQ 222
           W+Q+H++P+ + T  + K +G   G V EI         G  LR+R CL V++PLRRG  
Sbjct: 129 WIQVHDLPLGFMTESVGKAIGDSFGEVIEIDTCGDKVAWGKFLRIRACLNVNKPLRRGMI 188

Query: 223 MQDEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG 272
           +   +  +   S  YE+LPDFCYVCGCL H+  EC+  V+      +V ++YG
Sbjct: 189 LTAPNGGKILVSFRYEKLPDFCYVCGCLNHTENECEKAVIMRRDSGKVKKEYG 239

[Close]

BLAST of Lag0018784 vs. ExPASy TrEMBL
Match: A0A1R3GTB5 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.9e-38
Identity = 88/233 (37.77%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 43  WRSWKLTEEE--AEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTH 102
           W ++ LTEEE     V P  V   L EG+   C++GK+LS + VN++  RNVM   W+  
Sbjct: 9   WENFNLTEEENLEVAVDPRLVDETLAEGNN--CLIGKLLSRRPVNVEVMRNVMHMVWKLA 68

Query: 103 GVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSF 162
           G  ++    +NLF  QF S +EK RV    PW F+++L++LK   +   V D++   CSF
Sbjct: 69  GGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIKLDGCSF 128

Query: 163 WVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQ 222
           W Q H++P+ +    + + +G   G VEEI         G  LR R  L V +PLRRG  
Sbjct: 129 WKQAHDLPLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVTKPLRRGMI 188

Query: 223 MQDEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG 272
           +   +  +   S  YE+LPDFCYVCGCL H   EC+  VV    + ++ ++YG
Sbjct: 189 LTAPNGGKILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIKEYG 239

[Close]

BLAST of Lag0018784 vs. ExPASy TrEMBL
Match: A0A1S8AC25 (CCHC-type domain-containing protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-36
Identity = 80/216 (37.04%), Postives = 127/216 (58.80%), Query Frame = 0


Query: 42  RWRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHG 101
           R R+ +L++EE  +V   +   +  E     C+VGKVL ++ V+++  +  M+  WRT  
Sbjct: 9   RCRAIRLSDEEGGRVSFKNRMKINGEKILAGCLVGKVLHTREVSIEGLKMAMQRVWRTSR 68

Query: 102 VTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFW 161
             +IE   +N+F  +F S+V+K  +M  GPW FDR+L+ L +   +  +   +F   SFW
Sbjct: 69  EVKIEKLGENVFMFKFGSEVDKRSIMVGGPWHFDRALIGLTEPTGIGDIKKQDFSHVSFW 128

Query: 162 VQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRR--GF 221
           VQIH+VP+   ++ MA  LG  IG VEE+     GE  G  LRLR+ + + +PL++    
Sbjct: 129 VQIHDVPIMCMSKDMAAELGKVIGKVEEVETDAAGECFGQFLRLRISVDITKPLKKIIEL 188

Query: 222 QMQDEDDREFWCSVLYEQLPDFCYVCGCLGHSRREC 256
           + ++ED  +    V+YE+LPDFC+ CG +GH  REC
Sbjct: 189 EQEEEDADDIPMRVMYERLPDFCFCCGRIGHQYREC 224

[Close]

BLAST of Lag0018784 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 56.2 bits (134), Expect = 5.0e-08
Identity = 37/144 (25.69%), Postives = 60/144 (41.67%), Query Frame = 0


Query: 117 FWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGM 176
           F S+     ++  GPW+F+  + +++    + S  D EF+   FW+QI  +P+R+ T  +
Sbjct: 66  FQSEESMFSILRRGPWSFNDWMCVIQRWTKLHS--DAEFKRIPFWIQIRGIPLRFLTARI 125

Query: 177 AKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYE 236
              +G ++G+  E   T  G     L                FQ              YE
Sbjct: 126 ITSIGERMGLFLE---TNLGRDVSVL---------------KFQ--------------YE 175

Query: 237 QLPDFCYVCGCLGHSRRECDVVGD 261
           +L +FC  CG L H   EC   G+
Sbjct: 186 KLKNFCTTCGMLSHDASECPTSGN 175

The following BLAST results are available for this feature:

BLAST of Lag0018784 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149484.1	4.0e-52	43.04	uncharacterized protein LOC111017902 [Momordica charantia]	[more]
XP_022156711.1	3.2e-49	42.45	uncharacterized protein LOC111023555 [Momordica charantia]	[more]
OMP03234.1	1.4e-41	38.20	hypothetical protein COLO4_10561 [Corchorus olitorius]	[more]
XP_024033132.1	4.3e-38	36.97	uncharacterized protein LOC112095437 [Citrus clementina]	[more]
OMO61345.1	1.6e-37	37.77	reverse transcriptase [Corchorus capsularis]	[more]

BLAST of Lag0018784 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0018784 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D765	1.9e-52	43.04	uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DVS4	1.5e-49	42.45	uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1R3K847	6.9e-42	38.20	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10561 PE=4 SV=1	[more]
A0A1R3GTB5	7.9e-38	37.77	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV...	[more]
A0A1S8AC25	1.5e-36	37.04	CCHC-type domain-containing protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1	[more]

BLAST of Lag0018784 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42140.1	5.0e-08	25.69	zinc ion binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 71..189 e-value: 4.7E-20 score: 71.6
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 212..256 e-value: 3.5E-14 score: 52.2
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 60..258
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 60..258
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 242..255 score: 8.89451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0018784.1	Lag0018784.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding