Lag0017293 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017293
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	33 kDa ribonucleoprotein, chloroplastic
Location	chr5: 1806099 .. 1808560 (-)
RNA-Seq Expression	Lag0017293
Synteny	Lag0017293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGCTCGATTCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCTTCTTCTTCTCCATCGCCATCTTCTTCTTCTTCCTCAAGATTATCCTTCACTAACCTTCCCTCAGCCATTAAGCTTCGCATTTCCTTCTCCTCCCCTCTCCTTTCGCTCAATCCCACATCCGCCATTTGCCCTCCTTCCCTCTTTCTCACCAATCCATCGCCAAATCGCAGCGGCAGCGGCGGCCGATTGTGCTCTGCAGTTCAGGAGGTTAGTTTAGAGGAAGCTTCAGAGCAGAATCAGGACGTGAATCAGAAGAAAAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCTGTCGTCGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCGCTGATGTTGAGGTTCTTCTTCTTCTTCATCTGTTGTTGTTCTTTATTATTTTTGGTGTGAATGTTCTCTGAATCTGATGGAGTTTTTGTTTTGGAAATGGAATGTGTGTTTAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGACTTCACCAGATGAAGCTCAAGCTGCTATTGAGAAATTCAACTCTCAAGTAGGGTTTCTTAAACCTATTTCTGTTCATTTTCTGTCTGATTATTTGCCCAGATGATTTCTTATTCTTTTGTCATGATTTTTGTTTTAGTGGTATTCTACCAGTAGCTTGTTTGGTTTGGTTCTGAACTTCTGAAGTTGTGCATTTGCTAAATGAGACACTTAAAGAACTACTTTTAGAATTTTTCAAGAGTTCCTTTTTTTCTTTGGATATTTGCAAGTTTTCAAGTCGGGTTCCGCTTACCTAGACTTATCTCATGTGACAATTTCTAACCCTACAACATTTAGTTGTCAGTGAACTCGTATGTCTTAAATAGGTGTCACTATAGTGTTCGAACGGATTCCTTTTAGTTTTTTCGCAAGCTTAGATGTCATTAGGCCAACTTAGGGTAGTTCAAAAGTTTTCTTTTGATCATGTAGTTTACTACAATTATAGTTTTTTTTTCTTTTAATTATTATTCTATAAGTATTTTGATACCAAATGTTATATAGGGTTAAATGGTTGTCCCATGGGATTGATTCAACTAATATAAGCTAACTGGAACACCTATAGTTATTCTAAAAAAGTGAAGTTTATAGTTCAAATAGGAATGATTCCTCTATTTTGGAGATATTGGTTAAAAGATGATTAATTCTATTTAGTCTCAAGGTCATGAGTTTAAATAGTAACATGAACCTCAAATATTTAAAAGTATATTCTATTCTCGTTGTTATAGTGTTAGACTATATGCAAAGTTCACACCAAATTGAGCATAGTTCAGATGACGTAAAGCTTGTACTAATGATCAGAAGGTCTGAGGTTCAAATCCTCTACTCCATATGTTGTCAAAAAAGACTATATGCAAACTTTCACGTTAATATGATCCATGAAAACATGTATTTCTAATTGGAAATCTTATGCTATAGGAAATATCAGGAAGAGTAATACAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAGGCCTCCAGGTCCTCCTCCCGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGATTTCTTTTCTGAAAACTTTAATCCAATTGCAGCCAGGGTTGTGTTTGATAGCCCCTCTGGAAGATCTGCTGGGTATGGCTTTGTTTCTTTCGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCATTGGAGGGGAAGGTAATTTACTTGCTGAGATCCTGTTAATTGACAAAGTCTTGTGTGATTGAGTGTGAGTTAATCCTTGAAATATTCAAGTTTGAATCAACACTCCCGAAAAGATGAAAACTTTGAACTAATGCATAAGAGATTTGAAAAATAACTCAGTATGGTGATACATTTTAGTCCCTATTAGCTTTTTCCAAGCCCATCTTTCATGATAAGAAAGAGTTCAGGTGATATAGTTCGCTTTTACTCTAAGCTATAGGCTTGTTAATCTCGAATGCTACCTTAGAACTCAAGGACACAGTCGTACAATCTCGATTACTACCTTAGAACTCAAGGACACAGTTGTACAACCTATAGACTTGATCAAAGAATAGATCTTTGATCAAGGTCGTAATCTTGTATGCTACCTAGAACTAAATAAACTTAGAATTTACACAAAGACAGTCTTGTCAAATCCAAGTTACACAAATTTAAGTTTCTCTAATTCTCAACCCATTGCCCCCTGAATGTTCTATTACATTCCTTGCTCACATATTTGAAATGCTAAACTCTCATCCTTCTCCACAGGAATTGATGGGGAGACCACTTCGCCTGAAATTCAGTGAAAGAAATGTCAATGAATCAGAAACCCCAAAACAAGACACTGTTGAAAGCCAACCTGAAGAATCATAG

mRNA sequence

ATGGCGACGCTCGATTCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCTTCTTCTTCTCCATCGCCATCTTCTTCTTCTTCCTCAAGATTATCCTTCACTAACCTTCCCTCAGCCATTAAGCTTCGCATTTCCTTCTCCTCCCCTCTCCTTTCGCTCAATCCCACATCCGCCATTTGCCCTCCTTCCCTCTTTCTCACCAATCCATCGCCAAATCGCAGCGGCAGCGGCGGCCGATTGTGCTCTGCAGTTCAGGAGGTTAGTTTAGAGGAAGCTTCAGAGCAGAATCAGGACGTGAATCAGAAGAAAAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCTGTCGTCGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCGCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGACTTCACCAGATGAAGCTCAAGCTGCTATTGAGAAATTCAACTCTCAAGAAATATCAGGAAGAGTAATACAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAGGCCTCCAGGTCCTCCTCCCGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGATTTCTTTTCTGAAAACTTTAATCCAATTGCAGCCAGGGTTGTGTTTGATAGCCCCTCTGGAAGATCTGCTGGGTATGGCTTTGTTTCTTTCGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCATTGGAGGGGAAGGAATTGATGGGGAGACCACTTCGCCTGAAATTCAGTGAAAGAAATGTCAATGAATCAGAAACCCCAAAACAAGACACTGTTGAAAGCCAACCTGAAGAATCATAG

Coding sequence (CDS)

ATGGCGACGCTCGATTCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCTTCTTCTTCTCCATCGCCATCTTCTTCTTCTTCCTCAAGATTATCCTTCACTAACCTTCCCTCAGCCATTAAGCTTCGCATTTCCTTCTCCTCCCCTCTCCTTTCGCTCAATCCCACATCCGCCATTTGCCCTCCTTCCCTCTTTCTCACCAATCCATCGCCAAATCGCAGCGGCAGCGGCGGCCGATTGTGCTCTGCAGTTCAGGAGGTTAGTTTAGAGGAAGCTTCAGAGCAGAATCAGGACGTGAATCAGAAGAAAAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCTGTCGTCGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCGCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGACTTCACCAGATGAAGCTCAAGCTGCTATTGAGAAATTCAACTCTCAAGAAATATCAGGAAGAGTAATACAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAGGCCTCCAGGTCCTCCTCCCGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGATTTCTTTTCTGAAAACTTTAATCCAATTGCAGCCAGGGTTGTGTTTGATAGCCCCTCTGGAAGATCTGCTGGGTATGGCTTTGTTTCTTTCGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCATTGGAGGGGAAGGAATTGATGGGGAGACCACTTCGCCTGAAATTCAGTGAAAGAAATGTCAATGAATCAGAAACCCCAAAACAAGACACTGTTGAAAGCCAACCTGAAGAATCATAG

Protein sequence

MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSAICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES

Homology

[Close]

BLAST of Lag0017293 vs. NCBI nr
Match: XP_023007582.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 484.6 bits (1246), Expect = 6.3e-133
Identity = 261/299 (87.29%), Postives = 279/299 (93.31%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MATL+SAIPIISQYI+SSSSS    SSSSSS+LSF  LPSAIKLRISFSSPLLSLNPT+A
Sbjct: 1   MATLESAIPIISQYIASSSSS----SSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTA 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVD 120
           + P  LFLTNP  NR G G R CSAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVD
Sbjct: 61  VSPLPLFLTNPWRNR-GGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVD 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFA 180
           IKE FGQCGTV DVEIIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEFA
Sbjct: 121 IKEQFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA 180

Query: 181 KRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGR 240
           KRLKKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLR+FFSENFNPIAARVVFDSPSG+
Sbjct: 181 KRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGK 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETPK+DTVESQPEES
Sbjct: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of Lag0017293 vs. NCBI nr
Match: KAG6577717.1 (hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015754.1 hypothetical protein SDJN02_23392 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 480.7 bits (1236), Expect = 9.1e-132
Identity = 257/299 (85.95%), Postives = 273/299 (91.30%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MATL+SAIPIISQYI           SSSSS+LSF  LPSAIKLRISFSSPLLSLNPT+A
Sbjct: 1   MATLESAIPIISQYI-----------SSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTA 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVD 120
           + P  LFLTNPS NR G GGR CSAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVD
Sbjct: 61  VSPLPLFLTNPSRNR-GGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVD 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFA 180
           IKE FGQCGTV DVEIIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEFA
Sbjct: 121 IKEHFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA 180

Query: 181 KRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGR 240
           KRLKKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLR+FFSENFNPIAARVVFDSPSG+
Sbjct: 181 KRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGK 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSER V +SETPK+DTVESQPEES
Sbjct: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287

[Close]

BLAST of Lag0017293 vs. NCBI nr
Match: XP_022923294.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 479.2 bits (1232), Expect = 2.6e-131
Identity = 256/299 (85.62%), Postives = 272/299 (90.97%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MATL+SAIPIISQYI          SSSSSS+LS   LPSAIKLRISFSSPLLS NPT+A
Sbjct: 1   MATLESAIPIISQYI----------SSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTA 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVD 120
           + P  LFLTNPS NR G GGR CSAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVD
Sbjct: 61  VSPLPLFLTNPSRNR-GGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVD 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFA 180
           IKE FGQCGTV DVEIIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEFA
Sbjct: 121 IKEQFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA 180

Query: 181 KRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGR 240
           KRLKKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLR+FFSENFNPIAARVVFDSPSG+
Sbjct: 181 KRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGK 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSER V +SETPK+DTVESQPEES
Sbjct: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of Lag0017293 vs. NCBI nr
Match: XP_023551853.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 478.8 bits (1231), Expect = 3.4e-131
Identity = 259/299 (86.62%), Postives = 276/299 (92.31%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MATL+SAIPIISQYISSSS      SSSSSS+LSF  LPSAIKLRIS SSPLLSLNPT+A
Sbjct: 1   MATLESAIPIISQYISSSS------SSSSSSKLSFRTLPSAIKLRISSSSPLLSLNPTTA 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVD 120
           + P  LFLTNPS NR G GGR  SAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVD
Sbjct: 61  VSPLPLFLTNPSRNR-GGGGRFGSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVD 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFA 180
           IKE FGQCGTV DVEIIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEFA
Sbjct: 121 IKEQFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA 180

Query: 181 KRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGR 240
           KRLKKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLR+FFSENFNPIAARVVFDSPSG+
Sbjct: 181 KRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGK 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETP +DTVESQPEES
Sbjct: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPTEDTVESQPEES 292

[Close]

BLAST of Lag0017293 vs. NCBI nr
Match: XP_038904114.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 471.5 bits (1212), Expect = 5.5e-129
Identity = 257/300 (85.67%), Postives = 268/300 (89.33%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MATL+SAIPIISQYI           SSSSS+L    LPSAIKLRISFSSPL  LNPT+A
Sbjct: 1   MATLESAIPIISQYI-----------SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTA 60

Query: 61  ICPPSLFLTNPSPNRSGSGG-RLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVV 120
           I P SL L   S N  G GG RLCSAVQEVSLEEASEQN+DVNQKKKLYIFNLPWSFSVV
Sbjct: 61  ISPLSLHL---SRNHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVV 120

Query: 121 DIKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEF 180
           DIKELFGQCGTV DVEIIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEF
Sbjct: 121 DIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEF 180

Query: 181 AKRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSG 240
           AKRLKKPPPP+PPGPPP ETVNKLYVSNLAWKVRSSNLR+FFSENFNP+AARVVFDSPSG
Sbjct: 181 AKRLKKPPPPKPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSG 240

Query: 241 RSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           RSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPK+D VESQPEES
Sbjct: 241 RSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 286

[Close]

BLAST of Lag0017293 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.7e-29
Identity = 96/290 (33.10%), Postives = 157/290 (54.14%), Query Frame = 0


Query: 29  SSSRLSFTNLPSAIKLRISFSSPLLSLNPTSAICPPSLFLTNPSPNRSGSGGRLCSAVQE 88
           S   LS +   +    +I+ S+ L +  P S++   S+FL+  +    G        VQE
Sbjct: 30  SVDHLSLSTYNTHFNFKIN-STKLKAHFPISSLYRSSIFLSTCASVSDG-----VEVVQE 89

Query: 89  VSLEE---ASEQNQDVNQKK-----------KLYIFNLPWSFSVVDIKELFGQCGTVADV 148
              EE   ++E+ +++ +K+           +LY+ NLP+S +   + E+F + GTVA+V
Sbjct: 90  DDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANV 149

Query: 149 EIIKQK-NGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEF------AKRLKKPP 208
           EI+  +   RSRGFAFVTM S +EA+ AI  F+  ++ GR ++V F       +R     
Sbjct: 150 EIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSA 209

Query: 209 PPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGRSAGYGFV 268
             R       ++ +KLYV+NL+W + S  LRD F++    ++A+V++D  SGRS G+GF+
Sbjct: 210 KIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFI 269

Query: 269 SFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPE 298
           +F++ E   +AL ++   EL GRPLRL  + +    S  P    VE+ PE
Sbjct: 270 TFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPP---VVETSPE 310

[Close]

BLAST of Lag0017293 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-28
Identity = 70/192 (36.46%), Postives = 115/192 (59.90%), Query Frame = 0


Query: 88  EVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQKN-GRSRG 147
           EV  +E  E+ Q+  +  KL++ NLP+      +  LF Q G V   E+I  ++  +SRG
Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178

Query: 148 FAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVS 207
           F FVTM++ +EA+ A+E +N  +++GR++ V  A R +   P RP  P   E   ++YV 
Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPERP--PRTFEQSYRIYVG 238

Query: 208 NLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKE 267
           N+ W +  + L   FSE+   ++ARVV+D  +GRS G+GFV+ A+  E   A+++L+G+ 
Sbjct: 239 NIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQS 298

Query: 268 LMGRPLRLKFSE 279
           L GR +R+  +E
Sbjct: 299 LDGRTIRVNVAE 307

[Close]

BLAST of Lag0017293 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.7e-28
Identity = 94/313 (30.03%), Postives = 159/313 (50.80%), Query Frame = 0


Query: 16  SSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSAICPPSLFLTNPSPNR 75
           SS+++ +P  SS S+S+L +   P + KL  +  +PL+     S I     F    +   
Sbjct: 19  SSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLIL---HSNIRRHRFFCAAETEAS 78

Query: 76  SGSGGRLCSAVQEVSLEEASEQNQDVNQKKK-----------LYIFNLPWSFSVVDIKEL 135
           S       S  +E  +EE  ++ ++  +++K           LY+ NLP++ +  ++ ++
Sbjct: 79  SADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQI 138

Query: 136 FGQCGTVADVEIIKQK-NGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFAKRL 195
           FG+ GTV DV+I+  K   RSRGF FVTM S +EA+ A++ FNS +I GR ++V F    
Sbjct: 139 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF---- 198

Query: 196 KKPPPPRPPGPPPGE-----------------TVNKLYVSNLAWKVRSSNLRDFFSENFN 255
                  P  P  GE                 + +K+Y  NL W + S  L+D F +   
Sbjct: 199 -------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG 258

Query: 256 PIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESET 300
            + A+V+++  +GRS G+GF+SF + E  ++AL+++ G E+ GR LRL  +      + +
Sbjct: 259 VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVS 316

[Close]

BLAST of Lag0017293 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.3e-26
Identity = 96/289 (33.22%), Postives = 156/289 (53.98%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MA+  S++  +S  ++  +   P P+S ++S LSF +LP +  L +S SS        S+
Sbjct: 1   MASSASSLHFLS--LTPQTLPLPKPTSQTTS-LSFFSLPPS-SLNLSLSS--------SS 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEV-SLEEASEQNQDVNQKKKLYIFNLPWSFSVV 120
            C  S F+   + +           +++V   ++  E+ ++ +   K+++ NLP+S    
Sbjct: 61  SCFSSRFVRKVTLSD-------FDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSA 120

Query: 121 DIKELFGQCGTVADVEIIKQK-NGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVE 180
            + ELF + G V  VE+I  K  GRSRGF FVTM+S +E +AA ++FN  E+ GR ++V 
Sbjct: 121 ALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 180

Query: 181 FAKRLKKPPPPR---------PPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIA 240
                  PPP +           G    ++ N++YV NLAW V    L   FSE    + 
Sbjct: 181 -----SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVD 240

Query: 241 ARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 279
           A+VV+D  SGRS G+GFV++++ EE   A+ SL+G +L GR +R+  +E
Sbjct: 241 AKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265

[Close]

BLAST of Lag0017293 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-25
Identity = 93/284 (32.75%), Postives = 137/284 (48.24%), Query Frame = 0


Query: 24  SPSSSSSSRLSFTNLPSAIK--LRISFSSPLLSLNPTSAICPPSLFLTNPSPNRSGSGGR 83
           S SS + S  +  +LP  +     +S  SP LS    S     S+     SP  +    R
Sbjct: 4   SASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSP--ASRFAR 63

Query: 84  LCSAVQEVSLEE------ASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVADVE 143
             +   E  +EE      A  + Q  +   KL++ NLP++     + +LF   G V  VE
Sbjct: 64  NVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVE 123

Query: 144 IIKQK-NGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFAKRLKKPPPPRPPGP 203
           +I  K  GRSRGF FVTM+S  E +AA ++FN  E+ GR ++V        PPP R  G 
Sbjct: 124 VIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAG----PPPPKREDGF 183

Query: 204 PPGE--------------------TVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVF 263
             G                     + N++YV NL+W V    L   FSE    + ARV++
Sbjct: 184 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 243

Query: 264 DSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 279
           D  SGRS G+GFV++ + +E + A+ SL+G +L GR +R+  +E
Sbjct: 244 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281

[Close]

BLAST of Lag0017293 vs. ExPASy TrEMBL
Match: A0A6J1KZ42 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111500156 PE=4 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 3.0e-133
Identity = 261/299 (87.29%), Postives = 279/299 (93.31%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MATL+SAIPIISQYI+SSSSS    SSSSSS+LSF  LPSAIKLRISFSSPLLSLNPT+A
Sbjct: 1   MATLESAIPIISQYIASSSSS----SSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTA 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVD 120
           + P  LFLTNP  NR G G R CSAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVD
Sbjct: 61  VSPLPLFLTNPWRNR-GGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVD 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFA 180
           IKE FGQCGTV DVEIIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEFA
Sbjct: 121 IKEQFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA 180

Query: 181 KRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGR 240
           KRLKKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLR+FFSENFNPIAARVVFDSPSG+
Sbjct: 181 KRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGK 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETPK+DTVESQPEES
Sbjct: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of Lag0017293 vs. ExPASy TrEMBL
Match: A0A6J1E5Z7 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431035 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.3e-131
Identity = 256/299 (85.62%), Postives = 272/299 (90.97%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MATL+SAIPIISQYI          SSSSSS+LS   LPSAIKLRISFSSPLLS NPT+A
Sbjct: 1   MATLESAIPIISQYI----------SSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTA 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVD 120
           + P  LFLTNPS NR G GGR CSAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVD
Sbjct: 61  VSPLPLFLTNPSRNR-GGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVD 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFA 180
           IKE FGQCGTV DVEIIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEFA
Sbjct: 121 IKEQFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA 180

Query: 181 KRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGR 240
           KRLKKPPPP+PPGPPPGETV+KLYVSNLAWK RS+NLR+FFSENFNPIAARVVFDSPSG+
Sbjct: 181 KRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGK 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSER V +SETPK+DTVESQPEES
Sbjct: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of Lag0017293 vs. ExPASy TrEMBL
Match: A0A0A0L1U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.9e-127
Identity = 250/299 (83.61%), Postives = 270/299 (90.30%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           M T++S +PIIS YISSS       SSSS+S+L F  LPS IKLRISFSSPLLSLNPT+ 
Sbjct: 1   MVTIESPLPIISPYISSS-------SSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTP 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVD 120
           I P S    N S NR G G RLCSA+QEV+LEEASE+NQDVNQK+KLYIFNLPWS SVVD
Sbjct: 61  ISPTSF---NSSRNR-GGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVD 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFA 180
           IKELFGQCGTV+DVEIIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEFA
Sbjct: 121 IKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA 180

Query: 181 KRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGR 240
           KRLKKPPPP+PPGPPPGETVNKLYVSNLAWKVRS+NLRDFFSENFNPIAARVVFDSP+GR
Sbjct: 181 KRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGR 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           SAGYGFVSFATREEA+TALSSLEGKELMGRPLRLKFSERNVNE+ETPK+D VESQPEES
Sbjct: 241 SAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of Lag0017293 vs. ExPASy TrEMBL
Match: A0A1S3BK84 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 9.5e-127
Identity = 251/299 (83.95%), Postives = 267/299 (89.30%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MATL+SA+PIIS Y+          SSSSSS+L F  LPSAIKLRISFSSPLLSLNP + 
Sbjct: 1   MATLESALPIISPYV----------SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTP 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVD 120
           I P S    N S N  G GGRLCSAVQEVSLEEASE+ QDVNQKKKLYIFNLPWS SVVD
Sbjct: 61  ISPISF---NSSRN-PGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVD 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFA 180
           IKELFGQCGTV+DVEIIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEFA
Sbjct: 121 IKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA 180

Query: 181 KRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGR 240
           KR K+PPPP+PPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSE+FNPIAARVVFDSPSGR
Sbjct: 181 KRFKRPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGR 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           SAGYGFVSFATREEA+TALSSLEGKELMGRPLRLKFSER+VNESETPK+D VESQPEES
Sbjct: 241 SAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of Lag0017293 vs. ExPASy TrEMBL
Match: A0A5A7UAR3 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001500 PE=4 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 3.4e-124
Identity = 249/299 (83.28%), Postives = 265/299 (88.63%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSA 60
           MATL+SA+PIIS Y+          SSSSSS+L F  LPSAIKLRISFSSPLLSLNP + 
Sbjct: 1   MATLESALPIISPYV----------SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTP 60

Query: 61  ICPPSLFLTNPSPNRSGSGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVD 120
           I P S    N S N  G GGRLCSAVQEVSLEEASE+ QDVNQKKKLYIFNLPWS SVVD
Sbjct: 61  ISPISF---NSSRN-PGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVD 120

Query: 121 IKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFA 180
           IKELFGQCGTV+D  IIKQKNGRSRGFAFVTM SPDEAQAAI+KF+SQEISGRVI+VEFA
Sbjct: 121 IKELFGQCGTVSD--IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA 180

Query: 181 KRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSENFNPIAARVVFDSPSGR 240
           KR K+PPPP+PPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSE+FNPIAARVVFDSPSGR
Sbjct: 181 KRFKRPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGR 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDTVESQPEES 300
           SAGYGFVSFATREEA+TALSSLEGKELMGRPLRLKFSER+VNESETPK+D VESQPEES
Sbjct: 241 SAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of Lag0017293 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 262.3 bits (669), Expect = 4.7e-70
Identity = 164/306 (53.59%), Postives = 210/306 (68.63%), Query Frame = 0


Query: 1   MATLDSAIPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRI-SFSSPLLSLNPTS 60
           MA L++++ I S + SSSSSS P   S  SS L  T    A+ LRI S  SP+ SL    
Sbjct: 1   MAVLEASLSIFS-FSSSSSSSKPYLFSKRSSSLKLT----ALSLRIPSNLSPVFSLR--- 60

Query: 61  AICPPSLFLTNPSPNRSGSGGRLC-------SAVQEVSLEEASEQNQDVNQKKKLYIFNL 120
                     + S N       LC       SA +E S EE +E+ Q+ N K+KL++FNL
Sbjct: 61  ----------SGSDNSRRLVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNL 120

Query: 121 PWSFSVVDIKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISG 180
           PWS SV DI ELFGQCGTV +VEII+QK+G++RGFAFVTM S +EAQAAI+KF++ ++SG
Sbjct: 121 PWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSG 180

Query: 181 RVIQVEFAKRLKKPPPPRP---PGPPPGETVNKLYVSNLAWKVRSSNLRDFF-SENFNPI 240
           R+I V FA+R KKP P  P   P P PG+T +KLYVSNLAWK RS++LR+ F + +FNP+
Sbjct: 181 RIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPV 240

Query: 241 AARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPK 295
           +ARVVF  P GRS+GYGFVSFATREEAE A++ L GKE+MGRP+ LKFS R+ +ESE   
Sbjct: 241 SARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESE--D 286

[Close]

BLAST of Lag0017293 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-32
Identity = 76/201 (37.81%), Postives = 121/201 (60.20%), Query Frame = 0


Query: 104 KKKLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIE 163
           K +L   N+PW+ +  DI+ LF + G+V D+E+   K  R+RG  F+ M SP+EA  A++
Sbjct: 33  KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92

Query: 164 KFNSQEISGRVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFF-S 223
              S E  GR ++V++AK  KK        P P  T N L+V+NLA++ R+ +L++FF +
Sbjct: 93  SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 152

Query: 224 ENFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRL----KFSE 283
           +  N ++  V+F     RS+GYGFVSF T+++AE AL   +GK+ +GRP+RL    +F +
Sbjct: 153 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 212

Query: 284 RNVNESETPKQDTVESQPEES 300
               E   P ++  E +P +S
Sbjct: 213 LQAKEGLQPPEEEAEEEPSQS 232

[Close]

BLAST of Lag0017293 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-30
Identity = 99/303 (32.67%), Postives = 163/303 (53.80%), Query Frame = 0


Query: 8   IPIISQYISSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSAICPPSLF 67
           +P IS  I    S+  +P+ +    ++FTN        +S S+P L      A  P S+ 
Sbjct: 6   LPGISLQILGHKSNQKNPNPN----VAFTN------HSLSLSTPSLCRLHRHATFPDSI- 65

Query: 68  LTNPSPNRSGSGGRLCSAVQEVSLEEASEQN------QDVNQKKKLYIFNLPWSFSVVDI 127
              P+ +R+ +     +  QE  LE +S  +      ++   K +L   N+PW+ +  DI
Sbjct: 66  ---PAKSRNLT-SYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDI 125

Query: 128 KELFGQCGTVADVEIIKQKNGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFAK 187
           + LF + G+V D+E+   K  R+RG  F+ M SP+EA  A++   S E  GR ++V++AK
Sbjct: 126 RSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAK 185

Query: 188 RLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFF-SENFNPIAARVVFDSPSGR 247
             KK        P P  T N L+V+NLA++ R+ +L++FF ++  N ++  V+F     R
Sbjct: 186 TKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRR 245

Query: 248 SAGYGFVSFATREEAETALSSLEGKELMGRPLRL----KFSERNVNESETPKQDTVESQP 300
           S+GYGFVSF T+++AE AL   +GK+ +GRP+RL    +F +    E   P ++  E +P
Sbjct: 246 SSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEP 292

[Close]

BLAST of Lag0017293 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 125.6 bits (314), Expect = 6.9e-29
Identity = 94/313 (30.03%), Postives = 159/313 (50.80%), Query Frame = 0


Query: 16  SSSSSSSPSPSSSSSSRLSFTNLPSAIKLRISFSSPLLSLNPTSAICPPSLFLTNPSPNR 75
           SS+++ +P  SS S+S+L +   P + KL  +  +PL+     S I     F    +   
Sbjct: 19  SSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLIL---HSNIRRHRFFCAAETEAS 78

Query: 76  SGSGGRLCSAVQEVSLEEASEQNQDVNQKKK-----------LYIFNLPWSFSVVDIKEL 135
           S       S  +E  +EE  ++ ++  +++K           LY+ NLP++ +  ++ ++
Sbjct: 79  SADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQI 138

Query: 136 FGQCGTVADVEIIKQK-NGRSRGFAFVTMTSPDEAQAAIEKFNSQEISGRVIQVEFAKRL 195
           FG+ GTV DV+I+  K   RSRGF FVTM S +EA+ A++ FNS +I GR ++V F    
Sbjct: 139 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF---- 198

Query: 196 KKPPPPRPPGPPPGE-----------------TVNKLYVSNLAWKVRSSNLRDFFSENFN 255
                  P  P  GE                 + +K+Y  NL W + S  L+D F +   
Sbjct: 199 -------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG 258

Query: 256 PIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESET 300
            + A+V+++  +GRS G+GF+SF + E  ++AL+++ G E+ GR LRL  +      + +
Sbjct: 259 VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVS 316

[Close]

BLAST of Lag0017293 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.0 bits (310), Expect = 2.0e-28
Identity = 70/174 (40.23%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 106 KLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQKN-GRSRGFAFVTMTSPDEAQAAIEK 165
           KLY  NLP++     + ++         VE++  ++ G+SRGFAFVTM++ ++    I+ 
Sbjct: 86  KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145

Query: 166 FNSQEISGRVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLRDFFSEN 225
            +  E  GR ++V FA    KP P + P  P  ET +KL+V NL+W V S +L   F E 
Sbjct: 146 LDGTEYLGRALKVNFA---DKPKPNKEPLYP--ETEHKLFVGNLSWTVTSESLAGAFREC 205

Query: 226 FNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 279
            + + ARVVFD  +GRS GYGFV ++++ E ETAL SL+G EL GR +R+  ++
Sbjct: 206 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254

The following BLAST results are available for this feature:

BLAST of Lag0017293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023007582.1	6.3e-133	87.29	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima]	[more]
KAG6577717.1	9.1e-132	85.95	hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923294.1	2.6e-131	85.62	33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata]	[more]
XP_023551853.1	3.4e-131	86.62	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038904114.1	5.5e-129	85.67	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]

BLAST of Lag0017293 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	6.7e-29	33.10	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	1.5e-28	36.46	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	9.7e-28	30.03	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q08935	5.3e-26	33.22	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q9ZUU4	2.0e-25	32.75	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]

BLAST of Lag0017293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZ42	3.0e-133	87.29	29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1115...	[more]
A0A6J1E5Z7	1.3e-131	85.62	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0L1U2	1.9e-127	83.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1	[more]
A0A1S3BK84	9.5e-127	83.95	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 ...	[more]
A0A5A7UAR3	3.4e-124	83.28	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Lag0017293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35410.1	4.7e-70	53.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	2.3e-32	37.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.1	2.1e-30	32.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	6.9e-29	30.03	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	2.0e-28	40.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 202..275 e-value: 1.7E-21 score: 87.4 coord: 106..178 e-value: 1.9E-26 score: 103.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 107..175 e-value: 3.5E-18 score: 65.2 coord: 203..273 e-value: 1.3E-17 score: 63.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 105..182 score: 19.246052
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 201..279 score: 17.949841
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 72..185 e-value: 1.2E-28 score: 102.1 coord: 186..290 e-value: 2.0E-23 score: 85.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..299
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 16..291
None	No IPR available	PANTHER	PTHR48025:SF6	CHLOROPLAST, PUTATIVE-RELATED	coord: 16..291
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 97..194
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 186..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017293.1	Lag0017293.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding