Lag0016498 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016498
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein PROTON GRADIENT REGULATION 5, chloroplastic-like
Location	chr12: 38406738 .. 38407722 (-)
RNA-Seq Expression	Lag0016498
Synteny	Lag0016498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGACTTCGATTTCCGCGACTGGATTGTGCTGTTCCTCTTCTTTCTTTGGAGGCTGGGGATCTTCGGTGGCCGGAGAGGAGTACGCGGCGCTGGCGGCGAAGCCTGCGGCGGTGCAAGTGGGAGTGGGGAAGGCGGTGAGGTTCCGGCCGATGATGAAGAACGTGAATGAGGGGAAAGGGGTTTTTGCGCCATTGGTTGTGGTTACTCGGAATCTCATCGGCAAGAAGCGCTTCAATCAGCTTAGGGGTAAAGCAATTGCCTTGCATTCTCAGGTAATGGATTTTTTTAATCTCTATTTTTTCGTTTTGTCAACTTTATTAAGCAATATATATATATATATATATTAAGTTTACGCTTGGAAGCTCATTGAATAATCCTATTGTAATAATCAAAAGGTAGGTACATCGAATCCCTCCACCGCACATGTGGTCAAAAAAACTCAATGAAGAATCACACGATTCGGGAAATAAAAAAAACTAATCCTAAAATACGAGGGACAAAATTTTAGAATATGTTCTTGAAACCTTCATGAGAGAAAAAATAAAGGGTTTGAAATAGGTTCAATCCATGACGGTCACTTACCTAAGATTTAATATCTTAGGAGTTTCCTTGGCAACGGTTGTCCCATGAGATTAGTCGAGATGTACGTATACTGACTCGAACACTCACGGATATCCAATATATATATATATATATATATATATATATATGTTCTTGGAAGAAATTCAGAACACCTTGTTAAAAATTTAAATGTTTATATGAATAACTAGACTCATAAATCCAAAACCGAGAAAACCGAATCGAACCATTTGATTCCGATTACACAATTAGGTTTTTTTTTCAATGTGATGTTCATGTGGTGTTGTTTCTCAGGTAATCACAGAGTTTTGCAAATCAATTGGAGCAGATGGAAAGCAAAGACAAGGATTAATCAGGCTGGCCAAGAAGAATGGAGAAAGACTTGGATTCCTTGCCTGA

mRNA sequence

ATGGCGGCGACTTCGATTTCCGCGACTGGATTGTGCTGTTCCTCTTCTTTCTTTGGAGGCTGGGGATCTTCGGTGGCCGGAGAGGAGTACGCGGCGCTGGCGGCGAAGCCTGCGGCGGTGCAAGTGGGAGTGGGGAAGGCGGTGAGGTTCCGGCCGATGATGAAGAACGTGAATGAGGGGAAAGGGGTTTTTGCGCCATTGGTTGTGGTTACTCGGAATCTCATCGGCAAGAAGCGCTTCAATCAGCTTAGGGGTAAAGCAATTGCCTTGCATTCTCAGGTAATCACAGAGTTTTGCAAATCAATTGGAGCAGATGGAAAGCAAAGACAAGGATTAATCAGGCTGGCCAAGAAGAATGGAGAAAGACTTGGATTCCTTGCCTGA

Coding sequence (CDS)

ATGGCGGCGACTTCGATTTCCGCGACTGGATTGTGCTGTTCCTCTTCTTTCTTTGGAGGCTGGGGATCTTCGGTGGCCGGAGAGGAGTACGCGGCGCTGGCGGCGAAGCCTGCGGCGGTGCAAGTGGGAGTGGGGAAGGCGGTGAGGTTCCGGCCGATGATGAAGAACGTGAATGAGGGGAAAGGGGTTTTTGCGCCATTGGTTGTGGTTACTCGGAATCTCATCGGCAAGAAGCGCTTCAATCAGCTTAGGGGTAAAGCAATTGCCTTGCATTCTCAGGTAATCACAGAGTTTTGCAAATCAATTGGAGCAGATGGAAAGCAAAGACAAGGATTAATCAGGCTGGCCAAGAAGAATGGAGAAAGACTTGGATTCCTTGCCTGA

Protein sequence

MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEGKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNGERLGFLA

Homology

[Close]

BLAST of Lag0016498 vs. NCBI nr
Match: XP_022959256.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >XP_023006090.1 protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita maxima] >KAG6574897.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MAATSISATGLCCSSSF GGWGSSVAGE+YA LAA+PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]

BLAST of Lag0016498 vs. NCBI nr
Match: KAG7013470.1 (Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MAATSISATGLCCSSSF GGWGSSVAGE+YA LAA+PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 83  MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 142

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 143 KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 202

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 203 ERLGFLA 209

[Close]

BLAST of Lag0016498 vs. NCBI nr
Match: XP_023547978.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 3.7e-58
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MAATSISATGLCCSSSF GGWGSSVAGE+YA LAA+PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQ RGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]

BLAST of Lag0016498 vs. NCBI nr
Match: XP_022964453.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >KAG6593817.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026151.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.4 bits (594), Expect = 1.1e-57
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MA+TSISATGL CSSSF GGWGSSVAGE+YA LA KPAAVQVG+GKAVRFRPMMKNVNEG
Sbjct: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]

BLAST of Lag0016498 vs. NCBI nr
Match: XP_038875853.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 232.3 bits (591), Expect = 2.4e-57
Identity = 118/127 (92.91%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MAATSISATGLCCSSSFFGGWGS+VAGE+YAAL AK   VQVG+GK VRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFFGGWGSAVAGEDYAALVAKQGPVQVGMGKPVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]

BLAST of Lag0016498 vs. ExPASy Swiss-Prot
Match: Q9SL05 (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR5 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-44
Identity = 99/133 (74.44%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 1   MAATSISATG---LCCSSSFFGGWGSSVAGEEYAALAAKPAA--VQVGVG-KAVRFRPMM 60
           MAA SISA G       +SF+GGWGSS++GE+Y  + +K  A   Q  V  KA+R  PMM
Sbjct: 1   MAAASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSRKAIRAVPMM 60

Query: 61  KNVNEGKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIR 120
           KNVNEGKG+FAPLVVVTRNL+GKKRFNQLRGKAIALHSQVITEFCKSIGAD KQRQGLIR
Sbjct: 61  KNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIR 120

Query: 121 LAKKNGERLGFLA 128
           LAKKNGERLGFLA
Sbjct: 121 LAKKNGERLGFLA 133

The following BLAST results are available for this feature:

BLAST of Lag0016498 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959256.1	1.3e-58	95.28	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >X...	[more]
KAG7013470.1	1.3e-58	95.28	Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosp...	[more]
XP_023547978.1	3.7e-58	94.49	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. ...	[more]
XP_022964453.1	1.1e-57	94.49	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >K...	[more]
XP_038875853.1	2.4e-57	92.91	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Lag0016498 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SL05	2.4e-44	74.44	Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35709:SF3	PROTON GRADIENT REGULATION 5	coord: 1..127
IPR037497	Protein PROTON GRADIENT REGULATION 5	PANTHER	PTHR35709	PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016498.1	Lag0016498.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009644	response to high light intensity
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009055	electron transfer activity