Lag0016498 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016498
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein PROTON GRADIENT REGULATION 5, chloroplastic-like
Locationchr12: 38406738 .. 38407722 (-)
RNA-Seq ExpressionLag0016498
SyntenyLag0016498
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGACTTCGATTTCCGCGACTGGATTGTGCTGTTCCTCTTCTTTCTTTGGAGGCTGGGGATCTTCGGTGGCCGGAGAGGAGTACGCGGCGCTGGCGGCGAAGCCTGCGGCGGTGCAAGTGGGAGTGGGGAAGGCGGTGAGGTTCCGGCCGATGATGAAGAACGTGAATGAGGGGAAAGGGGTTTTTGCGCCATTGGTTGTGGTTACTCGGAATCTCATCGGCAAGAAGCGCTTCAATCAGCTTAGGGGTAAAGCAATTGCCTTGCATTCTCAGGTAATGGATTTTTTTAATCTCTATTTTTTCGTTTTGTCAACTTTATTAAGCAATATATATATATATATATATTAAGTTTACGCTTGGAAGCTCATTGAATAATCCTATTGTAATAATCAAAAGGTAGGTACATCGAATCCCTCCACCGCACATGTGGTCAAAAAAACTCAATGAAGAATCACACGATTCGGGAAATAAAAAAAACTAATCCTAAAATACGAGGGACAAAATTTTAGAATATGTTCTTGAAACCTTCATGAGAGAAAAAATAAAGGGTTTGAAATAGGTTCAATCCATGACGGTCACTTACCTAAGATTTAATATCTTAGGAGTTTCCTTGGCAACGGTTGTCCCATGAGATTAGTCGAGATGTACGTATACTGACTCGAACACTCACGGATATCCAATATATATATATATATATATATATATATATATGTTCTTGGAAGAAATTCAGAACACCTTGTTAAAAATTTAAATGTTTATATGAATAACTAGACTCATAAATCCAAAACCGAGAAAACCGAATCGAACCATTTGATTCCGATTACACAATTAGGTTTTTTTTTCAATGTGATGTTCATGTGGTGTTGTTTCTCAGGTAATCACAGAGTTTTGCAAATCAATTGGAGCAGATGGAAAGCAAAGACAAGGATTAATCAGGCTGGCCAAGAAGAATGGAGAAAGACTTGGATTCCTTGCCTGA

mRNA sequence

ATGGCGGCGACTTCGATTTCCGCGACTGGATTGTGCTGTTCCTCTTCTTTCTTTGGAGGCTGGGGATCTTCGGTGGCCGGAGAGGAGTACGCGGCGCTGGCGGCGAAGCCTGCGGCGGTGCAAGTGGGAGTGGGGAAGGCGGTGAGGTTCCGGCCGATGATGAAGAACGTGAATGAGGGGAAAGGGGTTTTTGCGCCATTGGTTGTGGTTACTCGGAATCTCATCGGCAAGAAGCGCTTCAATCAGCTTAGGGGTAAAGCAATTGCCTTGCATTCTCAGGTAATCACAGAGTTTTGCAAATCAATTGGAGCAGATGGAAAGCAAAGACAAGGATTAATCAGGCTGGCCAAGAAGAATGGAGAAAGACTTGGATTCCTTGCCTGA

Coding sequence (CDS)

ATGGCGGCGACTTCGATTTCCGCGACTGGATTGTGCTGTTCCTCTTCTTTCTTTGGAGGCTGGGGATCTTCGGTGGCCGGAGAGGAGTACGCGGCGCTGGCGGCGAAGCCTGCGGCGGTGCAAGTGGGAGTGGGGAAGGCGGTGAGGTTCCGGCCGATGATGAAGAACGTGAATGAGGGGAAAGGGGTTTTTGCGCCATTGGTTGTGGTTACTCGGAATCTCATCGGCAAGAAGCGCTTCAATCAGCTTAGGGGTAAAGCAATTGCCTTGCATTCTCAGGTAATCACAGAGTTTTGCAAATCAATTGGAGCAGATGGAAAGCAAAGACAAGGATTAATCAGGCTGGCCAAGAAGAATGGAGAAAGACTTGGATTCCTTGCCTGA

Protein sequence

MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEGKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNGERLGFLA
Homology
[Close]
BLAST of Lag0016498 vs. NCBI nr
Match: XP_022959256.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >XP_023006090.1 protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita maxima] >KAG6574897.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0 

Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MAATSISATGLCCSSSF GGWGSSVAGE+YA LAA+PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]
BLAST of Lag0016498 vs. NCBI nr
Match: KAG7013470.1 (Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0 

Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MAATSISATGLCCSSSF GGWGSSVAGE+YA LAA+PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 83  MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 142

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 143 KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 202

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 203 ERLGFLA 209

[Close]
BLAST of Lag0016498 vs. NCBI nr
Match: XP_023547978.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 3.7e-58
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MAATSISATGLCCSSSF GGWGSSVAGE+YA LAA+PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQ RGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]
BLAST of Lag0016498 vs. NCBI nr
Match: XP_022964453.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >KAG6593817.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026151.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.4 bits (594), Expect = 1.1e-57
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MA+TSISATGL CSSSF GGWGSSVAGE+YA LA KPAAVQVG+GKAVRFRPMMKNVNEG
Sbjct: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]
BLAST of Lag0016498 vs. NCBI nr
Match: XP_038875853.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 232.3 bits (591), Expect = 2.4e-57
Identity = 118/127 (92.91%), Postives = 122/127 (96.06%), Query Frame = 0 

Query: 1   MAATSISATGLCCSSSFFGGWGSSVAGEEYAALAAKPAAVQVGVGKAVRFRPMMKNVNEG 60
           MAATSISATGLCCSSSFFGGWGS+VAGE+YAAL AK   VQVG+GK VRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFFGGWGSAVAGEDYAALVAKQGPVQVGMGKPVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]
BLAST of Lag0016498 vs. ExPASy Swiss-Prot
Match: Q9SL05 (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR5 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-44
Identity = 99/133 (74.44%), Postives = 109/133 (81.95%), Query Frame = 0 

Query: 1   MAATSISATG---LCCSSSFFGGWGSSVAGEEYAALAAKPAA--VQVGVG-KAVRFRPMM 60
           MAA SISA G       +SF+GGWGSS++GE+Y  + +K  A   Q  V  KA+R  PMM
Sbjct: 1   MAAASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSRKAIRAVPMM 60

Query: 61  KNVNEGKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIR 120
           KNVNEGKG+FAPLVVVTRNL+GKKRFNQLRGKAIALHSQVITEFCKSIGAD KQRQGLIR
Sbjct: 61  KNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIR 120

Query: 121 LAKKNGERLGFLA 128
           LAKKNGERLGFLA
Sbjct: 121 LAKKNGERLGFLA 133

The following BLAST results are available for this feature:
BLAST of Lag0016498 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022959256.11.3e-5895.28protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >X... [more]
KAG7013470.11.3e-5895.28Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosp... [more]
XP_023547978.13.7e-5894.49protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. ... [more]
XP_022964453.11.1e-5794.49protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >K... [more]
XP_038875853.12.4e-5792.91protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida][more]
BLAST of Lag0016498 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SL052.4e-4474.44Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35709:SF3PROTON GRADIENT REGULATION 5coord: 1..127
IPR037497Protein PROTON GRADIENT REGULATION 5PANTHERPTHR35709PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTICcoord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016498.1Lag0016498.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0009644 response to high light intensity
cellular_component GO:0009507 chloroplast
molecular_function GO:0009055 electron transfer activity