Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGATAATTTACGTTGTCGTTGTTGCGTTTGTTTTCCTCGTCGTGCATGCAACTGGCCGCAACGTTTCAG GTTGTTAAACTGTCACTCAACTCAAAACTCAAAAGTTTAATCTCATAGATTAACATATATTTGATCTTTTGTTATTGTTTAATACTCTTGGTGTTTTTAGAATATCACACTTGATCTCATCTCAAATGTGAGATGAAGATTTGAATCTATGATTTTTTAAGTCACTAAATTATGGCCATCACTTCATACATTTGTGAGTTTAGAAATTAGCACAATATTGAACAAGTGATTATTGAATATTAATAGAGAGAAAATGATATTATAGTGTTTGTGACAAAAATATTTTTAGAAAGTGGCAAGACTTTTAGATTCTAATTAACCTTTTTTTAGCCTTTCAATTCTAAAAATTTAGGAGGCAATTAAAAGGAAAACTTCAATATCTTTTTTTTTTTTTTTCATATATTTTTCTTTCTATTGTGAATAGGAAGGGCTCCATAGGCCACCTCTTATTTTGATATTAGGTTAATAAGATTAAAAGTTTGTTTCGAATATTCTTAACACAGGGCGCAGCAAGGACGAGGACCAAACCCTAGAAATGGCAGTGGCTCCGGCAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCACGGTGGCTTCGGAGGCGGAGTTGGTGGCGTCGGCGGCATAGGTGGCGGAGTTGTGCCATTTCCTTGA mRNA sequence
ATGGCGAAGATAATTTACGTTGTCGTTGTTGCGTTTGTTTTCCTCGTCGTGCATGCAACTGGCCGCAACGTTTCAGGGCGCAGCAAGGACGAGGACCAAACCCTAGAAATGGCAGTGGCTCCGGCAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCACGGTGGCTTCGGAGGCGGAGTTGGTGGCGTCGGCGGCATAGGTGGCGGAGTTGTGCCATTTCCTTGA Coding sequence (CDS)
ATGGCGAAGATAATTTACGTTGTCGTTGTTGCGTTTGTTTTCCTCGTCGTGCATGCAACTGGCCGCAACGTTTCAGGGCGCAGCAAGGACGAGGACCAAACCCTAGAAATGGCAGTGGCTCCGGCAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCACGGTGGCTTCGGAGGCGGAGTTGGTGGCGTCGGCGGCATAGGTGGCGGAGTTGTGCCATTTCCTTGA Protein sequence
MAKIIYVVVVAFVFLVVHATGRNVSGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPFP
Homology
BLAST of Lag0016456 vs. NCBI nr
Match:
XP_038906734.1 (glycine-rich protein 5-like [Benincasa hispida])
HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 0
Query: 1 MAKIIYVVVVAFVFLVVHATGRNV-SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIFG 60 MAK I++VVVAFVFL V+A GRNV +G SK++ QTLE A AP ADPPSS GVDDQKNIFG Sbjct: 1 MAK-IFIVVVAFVFLFVNAGGRNVPAGGSKEDYQTLEQAAAPVADPPSSSGVDDQKNIFG 60 Query: 61 GVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPFP 120 GVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGG VPFP Sbjct: 61 GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGFVPFP 119
BLAST of Lag0016456 vs. NCBI nr
Match:
XP_031736587.1 (glycine-rich protein 5-like isoform X3 [Cucumis sativus])
HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 89/122 (72.95%), Postives = 103/122 (84.43%), Query Frame = 0
Query: 1 MAKIIYVVVVAFVFLVVHATGRNV---SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNI 60 MAK +V+++ FVFL+++ GRNV GR +++ +TLE A AP A+PPS GGVDDQKNI Sbjct: 1 MAK-YFVILITFVFLIMNVDGRNVPGAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNI 60 Query: 61 FGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVP 120 FGGVG AGMGGYIGGLFPHLGG+GVIGKYGGIGGG G GHGGFGGGVGGVGGIGGG+VP Sbjct: 61 FGGVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGFGVGHGGFGGGVGGVGGIGGGLVP 120
BLAST of Lag0016456 vs. NCBI nr
Match:
XP_022964503.1 (glycine-rich protein 5-like [Cucurbita moschata])
HSP 1 Score: 155.2 bits (391), Expect = 3.5e-34
Identity = 96/121 (79.34%), Postives = 102/121 (84.30%), Query Frame = 0
Query: 1 MAKI-IYVVVVAFVFLVVHATGRNV-SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIF 60 MAKI + VVVV FV LVVHA GRNV G S D D L++AVAP A PSS V DQKNI+ Sbjct: 1 MAKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDV-DQKNIY 60 Query: 61 GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120 GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF Sbjct: 61 GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120
BLAST of Lag0016456 vs. NCBI nr
Match:
XP_023515156.1 (glycine-rich protein 23-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 155.2 bits (391), Expect = 3.5e-34
Identity = 96/121 (79.34%), Postives = 102/121 (84.30%), Query Frame = 0
Query: 1 MAKI-IYVVVVAFVFLVVHATGRNV-SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIF 60 MAKI + VVVV FV LVVHA GRNV G S D D ++MAVAP A PSS V DQKNI+ Sbjct: 1 MAKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMVDMAVAPVAGQPSSNDV-DQKNIY 60 Query: 61 GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120 GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF Sbjct: 61 GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120
BLAST of Lag0016456 vs. NCBI nr
Match:
XP_023000565.1 (glycine-rich protein 5-like [Cucurbita maxima])
HSP 1 Score: 153.7 bits (387), Expect = 1.0e-33
Identity = 95/121 (78.51%), Postives = 101/121 (83.47%), Query Frame = 0
Query: 1 MAKI-IYVVVVAFVFLVVHATGRNV-SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIF 60 M KI + VVVV FV LVVHA GRNV G S D D L++AVAP A PSS V DQKNI+ Sbjct: 1 MVKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDV-DQKNIY 60 Query: 61 GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120 GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF Sbjct: 61 GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120
The following BLAST results are available for this feature:
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G G C G A A G A T A A T T T A C G T T G T C G T T G T T G C G T T T G T T T T C C T C G T C G T G C A T G C A A C T G G C C G C A A C G T T T C A G G G C G C A G C A A G G A C G A G G A C C A A A C C C T A G A A A T G G C A G T G G C T C C G G C A G C A G A T C C A C C G A G C A G C G G T G G C G T T G A C G A C C A A A A G A A C A T C T T T G G T G G G G T T G G A G G G G T T G C A G G G A T G G G T G G C T A C A T T G G A G G A T T G T T T C C A C A T C T T G G C G G G A T T G G T G T A A T C G G C A A G T A C G G C G G A A T T G G T G G T G G G A T T G G C T T C G G T C A C G G T G G C T T C G G A G G C G G A G T T G G T G G C G T C G G C G G C A T A G G T G G C G G A G T T G T G C C A T T T C C T T G A 50 100 150 200 250 300 350 Score = Score = Sequence PTHR34463 PTHR34463:SF12
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PANTHER PTHR34463 GLYCINE-RICH PROTEIN coord: 1..114
None No IPR available PANTHER PTHR34463:SF12 GLYCINE-RICH PROTEIN coord: 1..114
Relationships
The following mRNA feature(s) are a part of this gene: