Lag0016456 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016456
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	glycine-rich protein 5-like
Location	chr12: 37949141 .. 37950003 (+)
RNA-Seq Expression	Lag0016456
Synteny	Lag0016456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGATAATTTACGTTGTCGTTGTTGCGTTTGTTTTCCTCGTCGTGCATGCAACTGGCCGCAACGTTTCAGGTTGTTAAACTGTCACTCAACTCAAAACTCAAAAGTTTAATCTCATAGATTAACATATATTTGATCTTTTGTTATTGTTTAATACTCTTGGTGTTTTTAGAATATCACACTTGATCTCATCTCAAATGTGAGATGAAGATTTGAATCTATGATTTTTTAAGTCACTAAATTATGGCCATCACTTCATACATTTGTGAGTTTAGAAATTAGCACAATATTGAACAAGTGATTATTGAATATTAATAGAGAGAAAATGATATTATAGTGTTTGTGACAAAAATATTTTTAGAAAGTGGCAAGACTTTTAGATTCTAATTAACCTTTTTTTAGCCTTTCAATTCTAAAAATTTAGGAGGCAATTAAAAGGAAAACTTCAATATCTTTTTTTTTTTTTTTCATATATTTTTCTTTCTATTGTGAATAGGAAGGGCTCCATAGGCCACCTCTTATTTTGATATTAGGTTAATAAGATTAAAAGTTTGTTTCGAATATTCTTAACACAGGGCGCAGCAAGGACGAGGACCAAACCCTAGAAATGGCAGTGGCTCCGGCAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCACGGTGGCTTCGGAGGCGGAGTTGGTGGCGTCGGCGGCATAGGTGGCGGAGTTGTGCCATTTCCTTGA

mRNA sequence

ATGGCGAAGATAATTTACGTTGTCGTTGTTGCGTTTGTTTTCCTCGTCGTGCATGCAACTGGCCGCAACGTTTCAGGGCGCAGCAAGGACGAGGACCAAACCCTAGAAATGGCAGTGGCTCCGGCAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCACGGTGGCTTCGGAGGCGGAGTTGGTGGCGTCGGCGGCATAGGTGGCGGAGTTGTGCCATTTCCTTGA

Coding sequence (CDS)

ATGGCGAAGATAATTTACGTTGTCGTTGTTGCGTTTGTTTTCCTCGTCGTGCATGCAACTGGCCGCAACGTTTCAGGGCGCAGCAAGGACGAGGACCAAACCCTAGAAATGGCAGTGGCTCCGGCAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCACGGTGGCTTCGGAGGCGGAGTTGGTGGCGTCGGCGGCATAGGTGGCGGAGTTGTGCCATTTCCTTGA

Protein sequence

MAKIIYVVVVAFVFLVVHATGRNVSGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPFP

Homology

[Close]

BLAST of Lag0016456 vs. NCBI nr
Match: XP_038906734.1 (glycine-rich protein 5-like [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MAKIIYVVVVAFVFLVVHATGRNV-SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIFG 60
           MAK I++VVVAFVFL V+A GRNV +G SK++ QTLE A AP ADPPSS GVDDQKNIFG
Sbjct: 1   MAK-IFIVVVAFVFLFVNAGGRNVPAGGSKEDYQTLEQAAAPVADPPSSSGVDDQKNIFG 60

Query: 61  GVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPFP 120
           GVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGG VPFP
Sbjct: 61  GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGFVPFP 119

[Close]

BLAST of Lag0016456 vs. NCBI nr
Match: XP_031736587.1 (glycine-rich protein 5-like isoform X3 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 89/122 (72.95%), Postives = 103/122 (84.43%), Query Frame = 0


Query: 1   MAKIIYVVVVAFVFLVVHATGRNV---SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNI 60
           MAK  +V+++ FVFL+++  GRNV    GR +++ +TLE A AP A+PPS GGVDDQKNI
Sbjct: 1   MAK-YFVILITFVFLIMNVDGRNVPGAGGRRQEKYRTLERAAAPVAEPPSRGGVDDQKNI 60

Query: 61  FGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVP 120
           FGGVG  AGMGGYIGGLFPHLGG+GVIGKYGGIGGG G GHGGFGGGVGGVGGIGGG+VP
Sbjct: 61  FGGVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGFGVGHGGFGGGVGGVGGIGGGLVP 120

[Close]

BLAST of Lag0016456 vs. NCBI nr
Match: XP_022964503.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-34
Identity = 96/121 (79.34%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MAKI-IYVVVVAFVFLVVHATGRNV-SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           MAKI + VVVV FV LVVHA GRNV  G S D D  L++AVAP A  PSS  V DQKNI+
Sbjct: 1   MAKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDV-DQKNIY 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

[Close]

BLAST of Lag0016456 vs. NCBI nr
Match: XP_023515156.1 (glycine-rich protein 23-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-34
Identity = 96/121 (79.34%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MAKI-IYVVVVAFVFLVVHATGRNV-SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           MAKI + VVVV FV LVVHA GRNV  G S D D  ++MAVAP A  PSS  V DQKNI+
Sbjct: 1   MAKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMVDMAVAPVAGQPSSNDV-DQKNIY 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

[Close]

BLAST of Lag0016456 vs. NCBI nr
Match: XP_023000565.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 1.0e-33
Identity = 95/121 (78.51%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MAKI-IYVVVVAFVFLVVHATGRNV-SGRSKDEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           M KI + VVVV FV LVVHA GRNV  G S D D  L++AVAP A  PSS  V DQKNI+
Sbjct: 1   MVKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDV-DQKNIY 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

The following BLAST results are available for this feature:

BLAST of Lag0016456 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906734.1	2.1e-39	83.33	glycine-rich protein 5-like [Benincasa hispida]	[more]
XP_031736587.1	2.0e-34	72.95	glycine-rich protein 5-like isoform X3 [Cucumis sativus]	[more]
XP_022964503.1	3.5e-34	79.34	glycine-rich protein 5-like [Cucurbita moschata]	[more]
XP_023515156.1	3.5e-34	79.34	glycine-rich protein 23-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000565.1	1.0e-33	78.51	glycine-rich protein 5-like [Cucurbita maxima]	[more]

BLAST of Lag0016456 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..114
None	No IPR available	PANTHER	PTHR34463:SF12	GLYCINE-RICH PROTEIN	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016456.1	Lag0016456.1	mRNA