Lag0015955 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015955
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Locationchr12: 30082359 .. 30083015 (+)
RNA-Seq ExpressionLag0015955
SyntenyLag0015955
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGATAAGGTAGAGCAGGTTTTGATACAACTCTTCCATGCATATAGTTCATCTTCTTCTGGTAGTGGTGGTAGTGGCAGTGGCAATTTAAGTGTCATTACTAAAGAAAAGGGTGGGGCTCAAACAATGGATGTTGATGATGGGAGTGAGACATATGGATTTGCACATTCATTTTCAACTGTTAAGACTACTACCTTCGATAGAGAGTCAGAAATTGATGTGTATTTATCAGAAACTATTGCTAAGGATGATAGTTTTGACATTCTTAGTTGGTGGAAGCATAATAGTCATCGGTTTGAGATTCTCAATGCAATAAGTAGAGATAGTAGCATCTGAGTCTGCTTTTAGCATTGGAGGACGGGTGGTTGATTCCTCTCGTTCTTCATTAGCTCCAAAAACAGTTGAGGCTCTTATATGCACTCAAAATTGGCTCAATTCCAACCCAATAGATATTGAGTTTTTCAAACTACTAGAGGAAGATTCAACACTGGAAGAAGGTAATGGTTTTACTTTGTTTTCTTTTTTGCTTGATTAAACTTTTATTTTCAATCATAAAAGTGTTAATCTAAATCTACTGTGTTTAATTTTGTAGGATTCAGGATGGTCATTGATGAAGAAAAGGATGTTGATGAGATTGACTTTTCTAACTTGTGA

mRNA sequence

ATGACAGATAAGGTAGAGCAGGTTTTGATACAACTCTTCCATGCATATAGTTCATCTTCTTCTGGTAGTGGTGGTAGTGGCAGTGGCAATTTAAGTGTCATTACTAAAGAAAAGGGTGGGGCTCAAACAATGGATGTTGATGATGGGAGTGAGACATATGGATTTGCACATTCATTTTCAACTGTTAAGACTACTACCTTCGATAGAGAGTCAGAAATTGATGTGTATTTATCAGAAACTATTGCTAAGGATGATAAGATAGTAGCATCTGAGTCTGCTTTTAGCATTGGAGGACGGGTGGTTGATTCCTCTCGTTCTTCATTAGCTCCAAAAACAGTTGAGGCTCTTATATGCACTCAAAATTGGCTCAATTCCAACCCAATAGATATTGAGTTTTTCAAACTACTAGAGGAAGATTCAACACTGGAAGAAGGATTCAGGATGGTCATTGATGAAGAAAAGGATGTTGATGAGATTGACTTTTCTAACTTGTGA

Coding sequence (CDS)

ATGACAGATAAGGTAGAGCAGGTTTTGATACAACTCTTCCATGCATATAGTTCATCTTCTTCTGGTAGTGGTGGTAGTGGCAGTGGCAATTTAAGTGTCATTACTAAAGAAAAGGGTGGGGCTCAAACAATGGATGTTGATGATGGGAGTGAGACATATGGATTTGCACATTCATTTTCAACTGTTAAGACTACTACCTTCGATAGAGAGTCAGAAATTGATGTGTATTTATCAGAAACTATTGCTAAGGATGATAAGATAGTAGCATCTGAGTCTGCTTTTAGCATTGGAGGACGGGTGGTTGATTCCTCTCGTTCTTCATTAGCTCCAAAAACAGTTGAGGCTCTTATATGCACTCAAAATTGGCTCAATTCCAACCCAATAGATATTGAGTTTTTCAAACTACTAGAGGAAGATTCAACACTGGAAGAAGGATTCAGGATGGTCATTGATGAAGAAAAGGATGTTGATGAGATTGACTTTTCTAACTTGTGA

Protein sequence

MTDKVEQVLIQLFHAYSSSSSGSGGSGSGNLSVITKEKGGAQTMDVDDGSETYGFAHSFSTVKTTTFDRESEIDVYLSETIAKDDKIVASESAFSIGGRVVDSSRSSLAPKTVEALICTQNWLNSNPIDIEFFKLLEEDSTLEEGFRMVIDEEKDVDEIDFSNL
Homology
BLAST of Lag0015955 vs. NCBI nr
Match: TYK04573.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 6.5e-23
Identity = 78/169 (46.15%), Postives = 107/169 (63.31%), Query Frame = 0

Query: 1   MTDKVEQVLIQLFHAYSSSSSGSGGSGSGNLSVITKEKGGAQTMDVD-DGSETYGFAHSF 60
           M + VEQ   +LFH YS++ SGS   G  ++S  + +   +   ++D D +E  G    +
Sbjct: 434 MGNVVEQYCRRLFHEYSTTRSGS-RQGCSSISTTSTQTVSSLDANIDFDSNENVGEDFVY 493

Query: 61  STV-------KTTTFDR-ESEIDVYLSE-TIAKDDKIVASESAFSIGGRVVDSSRSSLAP 120
            T+        TT F++  SEID+YL E  +  +   VASESAFS  GRVVDSSR SLAP
Sbjct: 494 DTIVKEFEGDATTPFEQGSSEIDIYLLEANVMTEVSTVASESAFSTEGRVVDSSRCSLAP 553

Query: 121 KTVEALICTQNWLNSNPIDIEFFKLLEEDSTLEEGFRMVIDEEKDVDEI 160
           KTVEALICTQNWLNS+PI ++    LEE S  EEGFR+V++ EK++ ++
Sbjct: 554 KTVEALICTQNWLNSDPIHLQIQHELEEASKFEEGFRVVMENEKELKDL 601

BLAST of Lag0015955 vs. NCBI nr
Match: KAA0035273.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 6.5e-23
Identity = 80/174 (45.98%), Postives = 106/174 (60.92%), Query Frame = 0

Query: 1   MTDKVEQVLIQLFHAYSSSSSGSGGSGSGNLSVITKEKGGAQTMDVDDGSETYGFAHSFS 60
           M + VEQ   +LFH YS++ SGS    S   +  T+   G       D +E  G    + 
Sbjct: 1   MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTVSGLDANIDFDLNENVGEDFVYD 60

Query: 61  TV-------KTTTFDR-ESEIDVYLSE-TIAKDDKIVASESAFSIGGRVVDSSRSSLAPK 120
           T+        TT F++  SEID+YL E  +  +   VAS+SAFS  GRVVDSSR SLAPK
Sbjct: 61  TIVKKSEDDSTTPFEQGSSEIDIYLLEANVRTEVSTVASDSAFSTEGRVVDSSRCSLAPK 120

Query: 121 TVEALICTQNWLNSNPIDIEFFKLLEEDSTLEEGFRMVIDEEKDVDEI-DFSNL 165
           TVEALICTQNWLNS+ I ++F   LEE S  EEGFR+V++ EK+++++ DF  L
Sbjct: 121 TVEALICTQNWLNSDSIHLQFQHELEEASKFEEGFRVVMENEKELEDLPDFDKL 174

BLAST of Lag0015955 vs. NCBI nr
Match: KAA0051985.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 6.5e-23
Identity = 78/169 (46.15%), Postives = 107/169 (63.31%), Query Frame = 0

Query: 1   MTDKVEQVLIQLFHAYSSSSSGSGGSGSGNLSVITKEKGGAQTMDVD-DGSETYGFAHSF 60
           M + VEQ   +LFH YS++ SGS   G  ++S  + +   +   ++D D +E  G    +
Sbjct: 267 MGNVVEQYCRRLFHEYSTTRSGS-RQGCSSISTTSTQTVSSLDANIDFDSNENVGEDFVY 326

Query: 61  STV-------KTTTFDR-ESEIDVYLSE-TIAKDDKIVASESAFSIGGRVVDSSRSSLAP 120
            T+        TT F++  SEID+YL E  +  +   VASESAFS  GRVVDSSR SLAP
Sbjct: 327 DTIVKEFEGDATTPFEQGSSEIDIYLLEANVMTEVSTVASESAFSTEGRVVDSSRCSLAP 386

Query: 121 KTVEALICTQNWLNSNPIDIEFFKLLEEDSTLEEGFRMVIDEEKDVDEI 160
           KTVEALICTQNWLNS+PI ++    LEE S  EEGFR+V++ EK++ ++
Sbjct: 387 KTVEALICTQNWLNSDPIHLQIQHELEEASKFEEGFRVVMENEKELKDL 434

BLAST of Lag0015955 vs. NCBI nr
Match: KAA0048472.1 (transposase [Cucumis melo var. makuwa] >TYK28268.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 8.5e-23
Identity = 84/205 (40.98%), Postives = 112/205 (54.63%), Query Frame = 0

Query: 1   MTDKVEQVLIQLFHAYSSSSSGSGGSGSGNLSVITKEKGGAQTMDVD-DGSETYGFAHSF 60
           M + VEQ   +LFH YS++ SGS   G  + S  + +   +   ++D D +E  G    +
Sbjct: 1   MENVVEQCCRRLFHEYSTTRSGS-RQGCSSTSTTSTQTVSSLDANIDFDSNENVGEDFVY 60

Query: 61  STV-------KTTTFD-RESEIDVYLSETIAKDD-------------------------- 120
            T+        TT F+ R SEID+YL E   + +                          
Sbjct: 61  DTIVEEFEDDSTTPFEQRSSEIDIYLLEANVRTEGDFDILQWWKMNSDRFEVLGQMARDI 120

Query: 121 -----KIVASESAFSIGGRVVDSSRSSLAPKTVEALICTQNWLNSNPIDIEFFKLLEEDS 165
                  VASESAFS GGRV+DSSR SLAPKTVEALICTQNWLNSNPI ++F   LEE S
Sbjct: 121 LAIPVSTVASESAFSTGGRVIDSSRCSLAPKTVEALICTQNWLNSNPIHLQFQHELEEAS 180

BLAST of Lag0015955 vs. NCBI nr
Match: KAA0056156.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-22
Identity = 79/173 (45.66%), Postives = 104/173 (60.12%), Query Frame = 0

Query: 1   MTDKVEQVLIQLFHAYSSSSSGSGGSGSGNLSVITKEKGGAQTMDVDDGSETYGFAHSFS 60
           M + VEQ   +LFH Y ++ SGS    S   +  T+   G       D +E  G    + 
Sbjct: 1   MGNVVEQCCRRLFHEYRTTRSGSRQGCSSTSTTSTQTVSGLDANIDFDSNENVGEDFVYD 60

Query: 61  TV-------KTTTFDR-ESEIDVYLSETIAKDDKIVASESAFSIGGRVVDSSRSSLAPKT 120
           T+        TT F++  SEI +YL E   + +   ASESAFS GGRVVDSSR SLAPKT
Sbjct: 61  TIVKEFEDDSTTPFEQGSSEIGIYLLEANVRTE---ASESAFSTGGRVVDSSRCSLAPKT 120

Query: 121 VEALICTQNWLNSNPIDIEFFKLLEEDSTLEEGFRMVIDEEKDVDEI-DFSNL 165
           VEALICTQNWLNS+PI ++F   LEE S  EE FR+V++ EK+++++ DF  L
Sbjct: 121 VEALICTQNWLNSDPIHLQFQHELEEASKFEEEFRVVMENEKELEDLPDFDKL 170

BLAST of Lag0015955 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.7e-05
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 0

Query: 79  ETIAKDDKIVASESAFSIGGRVVDSSRSSLAPKTVEALICTQNWLNSNPIDIEFFKLLEE 138
           + +A     VASESAFS GGRVVD  R+ L  + VEALICT++W+ ++     +F  +  
Sbjct: 707 DVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAASRKGATYFPTMIG 766

Query: 139 D-STLEEGFRMVIDEEKDVDE----IDFS 163
           D   L+       + E  +DE    I+FS
Sbjct: 767 DLEVLDSVIAAATNHENHMDEDEDAIEFS 795

BLAST of Lag0015955 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.9e-05
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0

Query: 79  ETIAKDDKIVASESAFSIGGRVVDSSRSSLAPKTVEALICTQNWL 124
           + +A     VASESAFS GGRVVD  R+ L  + VEALICT++W+
Sbjct: 676 DVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 720

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK04573.16.5e-2346.15zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ... [more]
KAA0035273.16.5e-2345.98transposase [Cucumis melo var. makuwa][more]
KAA0051985.16.5e-2346.15zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ... [more]
KAA0048472.18.5e-2340.98transposase [Cucumis melo var. makuwa] >TYK28268.1 transposase [Cucumis melo var... [more]
KAA0056156.11.1e-2245.66transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P087703.7e-0538.20Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2[more]
P030104.9e-0555.56Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 88..123
e-value: 6.3E-10
score: 38.7
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 63..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015955.1Lag0015955.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0046983 protein dimerization activity