Lag0015955 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAGATAAGGTAGAGCAGGTTTTGATACAACTCTTCCATGCATATAGTTCATCTTCTTCTGGTAGTGGTGGTAGTGGCAGTGGCAATTTAAGTGTCATTACTAAAGAAAAGGGTGGGGCTCAAACAATGGATGTTGATGATGGGAGTGAGACATATGGATTTGCACATTCATTTTCAACTGTTAAGACTACTACCTTCGATAGAGAGTCAGAAATTGATGTGTATTTATCAGAAACTATTGCTAAGGATGATAGTTTTGACATTCTTAGTTGGTGGAAGCATAATAGTCATCGGTTTGAGATTCTCAATGCAATAAGTAGAGATAGTAGCATCTGAGTCTGCTTTTAGCATTGGAGGACGGGTGGTTGATTCCTCTCGTTCTTCATTAGCTCCAAAAACAGTTGAGGCTCTTATATGCACTCAAAATTGGCTCAATTCCAACCCAATAGATATTGAGTTTTTCAAACTACTAGAGGAAGATTCAACACTGGAAGAAGGTAATGGTTTTACTTTGTTTTCTTTTTTGCTTGATTAAACTTTTATTTTCAATCATAAAAGTGTTAATCTAAATCTACTGTGTTTAATTTTGTAGGATTCAGGATGGTCATTGATGAAGAAAAGGATGTTGATGAGATTGACTTTTCTAACTTGTGA ATGACAGATAAGGTAGAGCAGGTTTTGATACAACTCTTCCATGCATATAGTTCATCTTCTTCTGGTAGTGGTGGTAGTGGCAGTGGCAATTTAAGTGTCATTACTAAAGAAAAGGGTGGGGCTCAAACAATGGATGTTGATGATGGGAGTGAGACATATGGATTTGCACATTCATTTTCAACTGTTAAGACTACTACCTTCGATAGAGAGTCAGAAATTGATGTGTATTTATCAGAAACTATTGCTAAGGATGATAAGATAGTAGCATCTGAGTCTGCTTTTAGCATTGGAGGACGGGTGGTTGATTCCTCTCGTTCTTCATTAGCTCCAAAAACAGTTGAGGCTCTTATATGCACTCAAAATTGGCTCAATTCCAACCCAATAGATATTGAGTTTTTCAAACTACTAGAGGAAGATTCAACACTGGAAGAAGGATTCAGGATGGTCATTGATGAAGAAAAGGATGTTGATGAGATTGACTTTTCTAACTTGTGA ATGACAGATAAGGTAGAGCAGGTTTTGATACAACTCTTCCATGCATATAGTTCATCTTCTTCTGGTAGTGGTGGTAGTGGCAGTGGCAATTTAAGTGTCATTACTAAAGAAAAGGGTGGGGCTCAAACAATGGATGTTGATGATGGGAGTGAGACATATGGATTTGCACATTCATTTTCAACTGTTAAGACTACTACCTTCGATAGAGAGTCAGAAATTGATGTGTATTTATCAGAAACTATTGCTAAGGATGATAAGATAGTAGCATCTGAGTCTGCTTTTAGCATTGGAGGACGGGTGGTTGATTCCTCTCGTTCTTCATTAGCTCCAAAAACAGTTGAGGCTCTTATATGCACTCAAAATTGGCTCAATTCCAACCCAATAGATATTGAGTTTTTCAAACTACTAGAGGAAGATTCAACACTGGAAGAAGGATTCAGGATGGTCATTGATGAAGAAAAGGATGTTGATGAGATTGACTTTTCTAACTTGTGA MTDKVEQVLIQLFHAYSSSSSGSGGSGSGNLSVITKEKGGAQTMDVDDGSETYGFAHSFSTVKTTTFDRESEIDVYLSETIAKDDKIVASESAFSIGGRVVDSSRSSLAPKTVEALICTQNWLNSNPIDIEFFKLLEEDSTLEEGFRMVIDEEKDVDEIDFSNL Homology
BLAST of Lag0015955 vs. NCBI nr
Match: TYK04573.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]) HSP 1 Score: 118.2 bits (295), Expect = 6.5e-23 Identity = 78/169 (46.15%), Postives = 107/169 (63.31%), Query Frame = 0
BLAST of Lag0015955 vs. NCBI nr
Match: KAA0035273.1 (transposase [Cucumis melo var. makuwa]) HSP 1 Score: 118.2 bits (295), Expect = 6.5e-23 Identity = 80/174 (45.98%), Postives = 106/174 (60.92%), Query Frame = 0
BLAST of Lag0015955 vs. NCBI nr
Match: KAA0051985.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]) HSP 1 Score: 118.2 bits (295), Expect = 6.5e-23 Identity = 78/169 (46.15%), Postives = 107/169 (63.31%), Query Frame = 0
BLAST of Lag0015955 vs. NCBI nr
Match: KAA0048472.1 (transposase [Cucumis melo var. makuwa] >TYK28268.1 transposase [Cucumis melo var. makuwa]) HSP 1 Score: 117.9 bits (294), Expect = 8.5e-23 Identity = 84/205 (40.98%), Postives = 112/205 (54.63%), Query Frame = 0
BLAST of Lag0015955 vs. NCBI nr
Match: KAA0056156.1 (transposase [Cucumis melo var. makuwa]) HSP 1 Score: 117.5 bits (293), Expect = 1.1e-22 Identity = 79/173 (45.66%), Postives = 104/173 (60.12%), Query Frame = 0
BLAST of Lag0015955 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2) HSP 1 Score: 49.7 bits (117), Expect = 3.7e-05 Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 0
BLAST of Lag0015955 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 4.9e-05 Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|