Lag0006972 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006972
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein NUCLEAR FUSION DEFECTIVE 6
Location	chr6: 47617452 .. 47620156 (-)
RNA-Seq Expression	Lag0006972
Synteny	Lag0006972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTTAAAGGCAGTCTCTCGTTTATCATCTCGCTTGCACTCTCTCGCTCCAAAGCTCAACAAAAGGTCTTCATCTTCTGAGCTATCTCCATTCAAATCGACTTGTAAATCTCAGCCCTCCGCAGCTTCTACATCGCGTCTTCCTTGCACTTCGCGGTGAGAATTGTCTCCTTTCTCCATTTCCAATCTCATTCGTCATTCCATCAAACAATCATTAGTTACGGAAAGAAATGTTGTGCAATTCTTTATTGTGGAATAGATTTTTGCAATAGGTTGCCATTAGAGTTGAGTAGCCAGGGGTCATTGATGCCATTGCACAGCACCATAGCTGCAGCAAGATTGATTTCGAGTCTGACCATTGAAGCTCGAGGATGGGGTTTAGTTCCTCAGGGTATGTTTTGCTTAAGTTTATGCTTCTTGCAATTGGTTTTTGCGAATGCTGACGATTCTCTATTGTTGTATTTGCTCGTGGAATGTTGCAAATATCTGTTTGTTTGTTCCCACTTCACAGACATGAAAATAGTGTCAGAGTTTCAAAAACTTTTAGGATCTGGTCAGAGTTCAGGTCGACTTCAATGCATATGTTTTGCGGAATTCAGTACGATTGAATTAATAAGCCTGTTAATTGTGATAGAAGGAAAACATTGCTTTGACTGGTGTATGAAGGAGACAAGCTGAATGATGGAACCAACTTTACTATTTGAACCAAAGTTTAATATAACTGATCATATATAAGTAGTAGTCTTGTTCGTTTGCAGAATTTTAGCATTGATCTAGTTTTTCAACAGCTCGACTGTGGTAGCTTATGCTTATGTGTCGACTCTTCTAATTTATCACCCAGCTGCAAAGTATACCGAAGTGCTGTAGTTTACAACTAGTTGAGGGTAGAGAATTTTGCTCATCTTCAATTTTTATACATATTGATAGGAAACAAAGACCATTAATTGATATGATGAAATGGATTACAAAAAGGTCCTATTACTAAATAATTACAAAAAACATCTTCACTGATTAACGAGGGTAGTCAGACTGTAATTACAAAAAGGAGGAGACAATTTGCTCCAAGATAGAACTAATAGGGTTGTCGATTCGTTAAAGTAGTCAATGTCCTTTTTCTTATCAGTGAAGATACGACCATTTCGCTCCAACCAAATGTTCCAAAAGAAAGCACGAACATGACAAAGCCAAATAATCTTTTTGTCATTTTTGAAAGGGTGGCCCATAAATAAAAGAGATGAAAGGAAGAGAATATCACCCAGTCTAGGGAAGGACCACTCAACAAGGTGATTAATAAGTTAGTATGACACATTTCTGGCAGTGGTAATAATAGATAGAATAAAAATGATTTGATGAGACGCTCCCAAAATCTTAATTGTAGCGTCTCATCACATCATTTTTATTCTATCTATTATTACTACGGCCTGAAATATGCGTGTATACCATGCTAACTTATGCACATGTCAGTTATTCTCAATAGACTATCACTTGATCCTAAATATGTTTCTCTTTCAAAGAAAGACTATTACTTGATCTTTCAACCCATAGAACTACATCTCTAAGAACTAATTGTTTTCATGACTCGTGACTTGGTAAGCTTTTGGGGGGTACACATGTTTGGGTTATTTTGGCCAGAAAGAATTCAAAGAAATAAATAATTGAACGTTTGGGTAAGTTTTCTCCACTTTGCCAAAGAGTTTTGAACCATTTTTTGGTTCTTGAGTTTCTATTATATGTTATTATTTTGTTGGCATTCTAGTTGATAGGAGGTTTTTTTTTTTTTTGGTTATGTGCGCTGAAGTGTAATTGTTGGCTGATTGGGAGGTTATCTACGCCCCCCTTTGATGTAAAATCCTCCTTTCAACAAGTACCTTCTTTTCTTCCTCAATGAAAAAAAGATGCTGCCATAACTCTTAGTGAAAACAGAGCGACCTGAAGAAAGTAATCTATTTGATAATTGATATGTTTCGATCATTGTGAAAAAGTAATCAATACTAACTTCCAATGGCAAGTAGTTGGTAGCATCATTGTTCATTTTCCCCTTTGCACCTGAACTCTCATAATATATGCTTGTTTGGATGGTTAGGATGATAATGACCCCCTGTTTGTTCTCTGCTGGTTCCTGGGAAAGTTTGGGGATTTTATTTGGTTTTTATAATTCAGACTTGGGTAACTGTGAGAGTACTAAGGTATATTGGGGATGGTACTAGAATAGTAGTAAGGGCATAGAGGGAGAATTGAGAGCCTTAGAGAGCATAGATAATTTTGGGTATTGTTGTAGTGTGAGACTTTGGGAGAGAGTTAGTCCTCTCGAAAGGCTATTGTTATATTGTAGTTTCCTCTTAATATTCCAATATATTAGTATTTGGTGTTTTCTGAGTTTGGATACCTAAAAGAGTTTACAAATGTCTTCTGACATTAACTTTTGTTAATTTCATTTATGGGAGAAAGTTTGTATGCCAGTTTATAGTTCATTTGAAGTAGTTTCGTGTACGACAATTTATTTGTTAGAGAACTGTCTTTGACGTTGTTTTGTCTTTCCTGCAGGTATTTCAATGCCTTTATGACAGTTCTGCTTTGCAGGAAGTTGTTCTCTACAGTTCTCTGTTTGTTGACAATTGGGGTTTCTTTTTTACTTTTACCTCCCTGCCAGAATATAAACCTCAATCAATTGGGGTTTCTTTTGTCCTAAATGTTGGATGA

mRNA sequence

ATGGCGTCCTTAAAGGCAGTCTCTCGTTTATCATCTCGCTTGCACTCTCTCGCTCCAAAGCTCAACAAAAGGTCTTCATCTTCTGAGCTATCTCCATTCAAATCGACTTGTAAATCTCAGCCCTCCGCAGCTTCTACATCGCGTCTTCCTTGCACTTCGCGGTTGCCATTAGAGTTGAGTAGCCAGGGGTCATTGATGCCATTGCACAGCACCATAGCTGCAGCAAGATTGATTTCGAGTCTGACCATTGAAGCTCGAGGATGGGGTTTAGTTCCTCAGGACATGAAAATAGTGTCAGAGTTTCAAAAACTTTTAGGATCTGGTCAGAGTTCAGGTCGACTTCAATGCATATGTTTTGCGGAATTCAACTTGGGTAACTGTGAGAGTACTAAGGTATTTCAATGCCTTTATGACAGTTCTGCTTTGCAGGAAGTTGTTCTCTACAGTTCTCTGTTTGTTGACAATTGGGGTTTCTTTTTTACTTTTACCTCCCTGCCAGAATATAAACCTCAATCAATTGGGGTTTCTTTTGTCCTAAATGTTGGATGA

Coding sequence (CDS)

ATGGCGTCCTTAAAGGCAGTCTCTCGTTTATCATCTCGCTTGCACTCTCTCGCTCCAAAGCTCAACAAAAGGTCTTCATCTTCTGAGCTATCTCCATTCAAATCGACTTGTAAATCTCAGCCCTCCGCAGCTTCTACATCGCGTCTTCCTTGCACTTCGCGGTTGCCATTAGAGTTGAGTAGCCAGGGGTCATTGATGCCATTGCACAGCACCATAGCTGCAGCAAGATTGATTTCGAGTCTGACCATTGAAGCTCGAGGATGGGGTTTAGTTCCTCAGGACATGAAAATAGTGTCAGAGTTTCAAAAACTTTTAGGATCTGGTCAGAGTTCAGGTCGACTTCAATGCATATGTTTTGCGGAATTCAACTTGGGTAACTGTGAGAGTACTAAGGTATTTCAATGCCTTTATGACAGTTCTGCTTTGCAGGAAGTTGTTCTCTACAGTTCTCTGTTTGTTGACAATTGGGGTTTCTTTTTTACTTTTACCTCCCTGCCAGAATATAAACCTCAATCAATTGGGGTTTCTTTTGTCCTAAATGTTGGATGA

Protein sequence

MASLKAVSRLSSRLHSLAPKLNKRSSSSELSPFKSTCKSQPSAASTSRLPCTSRLPLELSSQGSLMPLHSTIAAARLISSLTIEARGWGLVPQDMKIVSEFQKLLGSGQSSGRLQCICFAEFNLGNCESTKVFQCLYDSSALQEVVLYSSLFVDNWGFFFTFTSLPEYKPQSIGVSFVLNVG

Homology

[Close]

BLAST of Lag0006972 vs. NCBI nr
Match: XP_023547330.1 (uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547332.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-32
Identity = 82/97 (84.54%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLHSLAPKLNKRSSSSELSPFKSTCKSQPSAASTSRLPCTSRLPLELS 60
          MASL+AVSRLSSRL SLAPKLNKRS SSELSPFKS+C+SQPSAASTSR+ CTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSTIAAARLISSLTIEARGWGLVPQDMKI 98
          SQGSLMPLHS IAAARLISSL+IE++GWGLVPQ + +
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGISM 97

[Close]

BLAST of Lag0006972 vs. NCBI nr
Match: XP_038889658.1 (uncharacterized protein LOC120079520 [Benincasa hispida])

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-32
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLHSLAPKLNKRSSSSELSPFKSTCKSQPSAASTSRLPCTSRLPLELS 60
          MASLK VSRLSSRL SLAPK NKRSS SELSPFKS C+SQPS ASTSRLPCTSRLP+ELS
Sbjct: 1  MASLKTVSRLSSRLQSLAPKFNKRSSYSELSPFKSPCQSQPSTASTSRLPCTSRLPVELS 60

Query: 61 SQGSLMPLHSTIAAARLISSLTIEARGWGLVPQDMKI 98
          SQGSLMPLHS IAAARLISSLTIE++GWGLVPQ + +
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISM 97

[Close]

BLAST of Lag0006972 vs. NCBI nr
Match: KAG6599455.1 (hypothetical protein SDJN03_09233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 5.0e-32
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLHSLAPKLNKRSSSSELSPFKSTCKSQPSAASTSRLPCTSRLPLELS 60
           MASL+AVSRLSSRL SLAPKLNKRS SSELSPFKS C+SQPSAASTSR+ CTSRLPLELS
Sbjct: 16  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 75

Query: 61  SQGSLMPLHSTIAAARLISSLTIEARGWGLVPQDMKI 98
           SQGSLMPLHS IAAARLISSL+IE++GWGLVPQ + +
Sbjct: 76  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGISM 112

[Close]

BLAST of Lag0006972 vs. NCBI nr
Match: XP_022946234.1 (uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946235.1 uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946236.1 uncharacterized protein LOC111450380 [Cucurbita moschata])

HSP 1 Score: 148.7 bits (374), Expect = 5.0e-32
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLHSLAPKLNKRSSSSELSPFKSTCKSQPSAASTSRLPCTSRLPLELS 60
          MASL+AVSRLSSRL SLAPKLNKRS SSELSPFKS C+SQPSAASTSR+ CTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSTIAAARLISSLTIEARGWGLVPQDMKI 98
          SQGSLMPLHS IAAARLISSL+IE++GWGLVPQ + +
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGISM 97

[Close]

BLAST of Lag0006972 vs. NCBI nr
Match: KAG7030432.1 (hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 8.5e-32
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLHSLAPKLNKRSSSSELSPFKSTCKSQPSAASTSRLPCTSRLPLELS 60
          MASL+AVSRLSSRL SLAPKLNKRS SSELSPFKS C+SQPSAASTSR+ CTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSTIAAARLISSLTIEARGWGLVPQ 94
          SQGSLMPLHS IAAARLISSL+IE++GWGLVPQ
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQ 93

The following BLAST results are available for this feature:

BLAST of Lag0006972 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547330.1	3.8e-32	84.54	uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331....	[more]
XP_038889658.1	3.8e-32	84.54	uncharacterized protein LOC120079520 [Benincasa hispida]	[more]
KAG6599455.1	5.0e-32	84.54	hypothetical protein SDJN03_09233, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022946234.1	5.0e-32	84.54	uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946235.1 unchar...	[more]
KAG7030432.1	8.5e-32	88.17	hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0006972 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..49
None	No IPR available	PANTHER	PTHR33156:SF43	BNAANNG28360D PROTEIN	coord: 1..95
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006972.1	Lag0006972.1	mRNA