Lag0006373 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006373
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr6: 41740054 .. 41740560 (+)
RNA-Seq ExpressionLag0006373
SyntenyLag0006373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAACATATGGAATATCAGACGAAATCGAACACAAGCATCCAACAGTATCATCCCAGCAGACTCAGTCTTCAAATTAATAGAAGATAACATCAAAGATTGGGAAAACTCTTACCTTAAGAGATCAAAGCAATGCAGCTTGAGGAACCATGCTAGTCAAGCTACCTGGGAGAAGCCGAAGCCGAATTTTTGGAAAATTAACCCAGACGCTGCTTGGTTCAAAGAAGCAGGTACTGGAGGCATTGGTTGGACAGTGCATGACTCGTCTGGGCCCTTAATTTGCATTGGCACGAAGAAGATGAATCACAAATGGGAGATCAAACTTTTGGAAGCTACAGCCATCCTGGAAGGAATCAAGGCGATTAGCAATACCTGCATTCAAAATGGGTTGTCGCTGCAAGTTGAATCAGACGCTTTGTCAGTTATCAAAGCCCTGAATGGTGAAGACGATGACCAGTCGGAGTTGAAGTTGATCGTCGATGGCATCCTAGTTGATCGTCGATGA

mRNA sequence

ATGTGGAACATATGGAATATCAGACGAAATCGAACACAAGCATCCAACAGTATCATCCCAGCAGACTCAGTCTTCAAATTAATAGAAGATAACATCAAAGATTGGGAAAACTCTTACCTTAAGAGATCAAAGCAATGCAGCTTGAGGAACCATGCTAGTCAAGCTACCTGGGAGAAGCCGAAGCCGAATTTTTGGAAAATTAACCCAGACGCTGCTTGGTTCAAAGAAGCAGGTACTGGAGGCATTGGTTGGACAGTGCATGACTCGTCTGGGCCCTTAATTTGCATTGGCACGAAGAAGATGAATCACAAATGGGAGATCAAACTTTTGGAAGCTACAGCCATCCTGGAAGGAATCAAGGCGATTAGCAATACCTGCATTCAAAATGGGTTGTCGCTGCAAGTTGAATCAGACGCTTTGTCAGTTATCAAAGCCCTGAATGGTGAAGACGATGACCAGTCGGAGTTGAAGTTGATCGTCGATGGCATCCTAGTTGATCGTCGATGA

Coding sequence (CDS)

ATGTGGAACATATGGAATATCAGACGAAATCGAACACAAGCATCCAACAGTATCATCCCAGCAGACTCAGTCTTCAAATTAATAGAAGATAACATCAAAGATTGGGAAAACTCTTACCTTAAGAGATCAAAGCAATGCAGCTTGAGGAACCATGCTAGTCAAGCTACCTGGGAGAAGCCGAAGCCGAATTTTTGGAAAATTAACCCAGACGCTGCTTGGTTCAAAGAAGCAGGTACTGGAGGCATTGGTTGGACAGTGCATGACTCGTCTGGGCCCTTAATTTGCATTGGCACGAAGAAGATGAATCACAAATGGGAGATCAAACTTTTGGAAGCTACAGCCATCCTGGAAGGAATCAAGGCGATTAGCAATACCTGCATTCAAAATGGGTTGTCGCTGCAAGTTGAATCAGACGCTTTGTCAGTTATCAAAGCCCTGAATGGTGAAGACGATGACCAGTCGGAGTTGAAGTTGATCGTCGATGGCATCCTAGTTGATCGTCGATGA

Protein sequence

MWNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQATWEKPKPNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEGIKAISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGILVDRR
Homology
BLAST of Lag0006373 vs. NCBI nr
Match: XP_021753633.1 (uncharacterized protein LOC110719026 [Chenopodium quinoa])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-11
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 0

Query: 2   WNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQ--ATWEK 61
           W IW  R +R      +  A  V K  +  I +  ++  K+++  S+     +    W K
Sbjct: 99  WAIWGARNSRVM-EGEVRSAVEVVKYAQKTIGEVSDARDKKAEGWSVAAGGGELPVVWSK 158

Query: 62  PKPNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEGI 121
           P   F K+N D  +  E    G+G  V D  G ++ +G +++   WE+++ EA AI  G+
Sbjct: 159 PAVGFLKVNVDNGFVGELAC-GLGAVVRDEVGIVVAVGVQQIKASWEVRIAEAKAIEWGL 218

Query: 122 KAISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGILV 166
           +  +   +++   L VESD L VI+AL  +  D SEL LI+D IL+
Sbjct: 219 RVAAGLGVRD---LVVESDCLQVIQALKNKTADLSELSLIIDDILL 259

BLAST of Lag0006373 vs. NCBI nr
Match: KAF7806899.1 (uncharacterized protein G2W53_039060 [Senna tora])

HSP 1 Score: 78.6 bits (192), Expect = 5.8e-11
Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 0

Query: 2   WNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQATWEKPK 61
           +N+W  RRN  +        + ++      +KD     +  S+ CS+ +HAS   WE+P 
Sbjct: 587 YNLW-YRRNEVRIEGKSACLEQIWVNSHSFVKD--IFQIHTSEGCSVAHHASTLRWERPT 646

Query: 62  PNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEGIKA 121
           P F+KIN DA+  K+   GGIG    D SG ++    K++    ++ +LEATAI  G++ 
Sbjct: 647 PPFYKINVDAS-VKQGPDGGIGCVARDGSGRVLAALAKRVPSAGDVDILEATAIFTGMEF 706

Query: 122 ISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGI 164
             +  IQ+   + VE D+  V+  L+     +S L LI+D I
Sbjct: 707 ARDLSIQD---IVVEGDSTVVLGYLSSAVSLRSPLGLILDNI 741

BLAST of Lag0006373 vs. NCBI nr
Match: KAF7827258.1 (uncharacterized protein G2W53_018422 [Senna tora])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = 0

Query: 2   WNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQATWEKPK 61
           +N+W+ RRN  +        + ++   ++ +KD     +  S+ CS+ +HA    WE+P 
Sbjct: 230 YNLWH-RRNEVRIEGKSACLEQIWVNSQNFVKD--IFQIHTSEDCSVAHHALTLRWERPT 289

Query: 62  PNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEGIKA 121
           P F+KIN DA+  K+   GGIG    D SG ++    K++    ++ +LEATAI  G++ 
Sbjct: 290 PPFYKINVDAS-VKQGPDGGIGCVARDGSGRVLAALAKRVPLASDVDILEATAIFTGMEF 349

Query: 122 ISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGI 164
             +  IQ+   + VE D+  V+  L      +S L LI+D I
Sbjct: 350 ARDLSIQD---IVVEGDSAVVLGYLTSVVSLRSPLGLILDNI 384

BLAST of Lag0006373 vs. NCBI nr
Match: CAB4273082.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-10
Identity = 52/173 (30.06%), Postives = 80/173 (46.24%), Query Frame = 0

Query: 1    MWNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQ------ 60
            +W IW I RN      ++I      +   D + ++  + +      +      +      
Sbjct: 1086 LWRIWKI-RNGAVFEGTVIEPHVAVECFLDQVHEFRTAQMHGKPLINELPRPPEVQAETV 1145

Query: 61   ATWEKPKPNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATA 120
             +W KP     K+N DAAW  +   GG+GW V DS G ++  G K          +EA A
Sbjct: 1146 TSWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEA 1205

Query: 121  ILEGIKAISNTCIQNGLS-LQVESDALSVIKALNGEDDDQSELKLIVDGILVD 167
            I E + A    C+Q+GLS L+VESD+L VI+ + GE      + + VD I+ D
Sbjct: 1206 IREALVA----CVQSGLSKLEVESDSLQVIRMIGGE----WNMDIAVDTIVFD 1249

BLAST of Lag0006373 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-10
Identity = 47/166 (28.31%), Postives = 80/166 (48.19%), Query Frame = 0

Query: 2   WNIWNIRRN---RTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQATWE 61
           W IWN R     R + S+       + K + ++    E S     K  +     ++  WE
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLN-----NKLKWE 77

Query: 62  KPKPNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEG 121
            P  + W +N DA+W      GGIGW +    G ++  G + +     +KLLEA+AILEG
Sbjct: 78  PPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEG 137

Query: 122 IKAISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGIL 165
           ++ ++N  +     L +E+D+  V   LN + +D ++   +V+ IL
Sbjct: 138 LRNLTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEIL 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021753633.11.5e-1130.72uncharacterized protein LOC110719026 [Chenopodium quinoa][more]
KAF7806899.15.8e-1132.10uncharacterized protein G2W53_039060 [Senna tora][more]
KAF7827258.11.7e-1031.48uncharacterized protein G2W53_018422 [Senna tora][more]
CAB4273082.12.2e-1030.06unnamed protein product [Prunus armeniaca][more]
XP_022155262.13.8e-1028.31uncharacterized protein LOC111022403 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 64..162
e-value: 2.7E-5
score: 26.2
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 68..163
e-value: 5.3E-13
score: 48.9
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 54..162
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 54..162
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 67..165
e-value: 3.05545E-9
score: 50.3904
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 64..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006373.1Lag0006373.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity