Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAACATATGGAATATCAGACGAAATCGAACACAAGCATCCAACAGTATCATCCCAGCAGACTCAGTCTTCAAATTAATAGAAGATAACATCAAAGATTGGGAAAACTCTTACCTTAAGAGATCAAAGCAATGCAGCTTGAGGAACCATGCTAGTCAAGCTACCTGGGAGAAGCCGAAGCCGAATTTTTGGAAAATTAACCCAGACGCTGCTTGGTTCAAAGAAGCAGGTACTGGAGGCATTGGTTGGACAGTGCATGACTCGTCTGGGCCCTTAATTTGCATTGGCACGAAGAAGATGAATCACAAATGGGAGATCAAACTTTTGGAAGCTACAGCCATCCTGGAAGGAATCAAGGCGATTAGCAATACCTGCATTCAAAATGGGTTGTCGCTGCAAGTTGAATCAGACGCTTTGTCAGTTATCAAAGCCCTGAATGGTGAAGACGATGACCAGTCGGAGTTGAAGTTGATCGTCGATGGCATCCTAGTTGATCGTCGATGA mRNA sequence
ATGTGGAACATATGGAATATCAGACGAAATCGAACACAAGCATCCAACAGTATCATCCCAGCAGACTCAGTCTTCAAATTAATAGAAGATAACATCAAAGATTGGGAAAACTCTTACCTTAAGAGATCAAAGCAATGCAGCTTGAGGAACCATGCTAGTCAAGCTACCTGGGAGAAGCCGAAGCCGAATTTTTGGAAAATTAACCCAGACGCTGCTTGGTTCAAAGAAGCAGGTACTGGAGGCATTGGTTGGACAGTGCATGACTCGTCTGGGCCCTTAATTTGCATTGGCACGAAGAAGATGAATCACAAATGGGAGATCAAACTTTTGGAAGCTACAGCCATCCTGGAAGGAATCAAGGCGATTAGCAATACCTGCATTCAAAATGGGTTGTCGCTGCAAGTTGAATCAGACGCTTTGTCAGTTATCAAAGCCCTGAATGGTGAAGACGATGACCAGTCGGAGTTGAAGTTGATCGTCGATGGCATCCTAGTTGATCGTCGATGA Coding sequence (CDS)
ATGTGGAACATATGGAATATCAGACGAAATCGAACACAAGCATCCAACAGTATCATCCCAGCAGACTCAGTCTTCAAATTAATAGAAGATAACATCAAAGATTGGGAAAACTCTTACCTTAAGAGATCAAAGCAATGCAGCTTGAGGAACCATGCTAGTCAAGCTACCTGGGAGAAGCCGAAGCCGAATTTTTGGAAAATTAACCCAGACGCTGCTTGGTTCAAAGAAGCAGGTACTGGAGGCATTGGTTGGACAGTGCATGACTCGTCTGGGCCCTTAATTTGCATTGGCACGAAGAAGATGAATCACAAATGGGAGATCAAACTTTTGGAAGCTACAGCCATCCTGGAAGGAATCAAGGCGATTAGCAATACCTGCATTCAAAATGGGTTGTCGCTGCAAGTTGAATCAGACGCTTTGTCAGTTATCAAAGCCCTGAATGGTGAAGACGATGACCAGTCGGAGTTGAAGTTGATCGTCGATGGCATCCTAGTTGATCGTCGATGA Protein sequence
MWNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQATWEKPKPNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEGIKAISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGILVDRR
Homology
BLAST of Lag0006373 vs. NCBI nr
Match:
XP_021753633.1 (uncharacterized protein LOC110719026 [Chenopodium quinoa])
HSP 1 Score: 80.5 bits (197), Expect = 1.5e-11
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 0
Query: 2 WNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQ--ATWEK 61 W IW R +R + A V K + I + ++ K+++ S+ + W K Sbjct: 99 WAIWGARNSRVM-EGEVRSAVEVVKYAQKTIGEVSDARDKKAEGWSVAAGGGELPVVWSK 158 Query: 62 PKPNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEGI 121 P F K+N D + E G+G V D G ++ +G +++ WE+++ EA AI G+ Sbjct: 159 PAVGFLKVNVDNGFVGELAC-GLGAVVRDEVGIVVAVGVQQIKASWEVRIAEAKAIEWGL 218 Query: 122 KAISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGILV 166 + + +++ L VESD L VI+AL + D SEL LI+D IL+ Sbjct: 219 RVAAGLGVRD---LVVESDCLQVIQALKNKTADLSELSLIIDDILL 259
BLAST of Lag0006373 vs. NCBI nr
Match:
KAF7806899.1 (uncharacterized protein G2W53_039060 [Senna tora])
HSP 1 Score: 78.6 bits (192), Expect = 5.8e-11
Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 0
Query: 2 WNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQATWEKPK 61 +N+W RRN + + ++ +KD + S+ CS+ +HAS WE+P Sbjct: 587 YNLW-YRRNEVRIEGKSACLEQIWVNSHSFVKD--IFQIHTSEGCSVAHHASTLRWERPT 646 Query: 62 PNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEGIKA 121 P F+KIN DA+ K+ GGIG D SG ++ K++ ++ +LEATAI G++ Sbjct: 647 PPFYKINVDAS-VKQGPDGGIGCVARDGSGRVLAALAKRVPSAGDVDILEATAIFTGMEF 706 Query: 122 ISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGI 164 + IQ+ + VE D+ V+ L+ +S L LI+D I Sbjct: 707 ARDLSIQD---IVVEGDSTVVLGYLSSAVSLRSPLGLILDNI 741
BLAST of Lag0006373 vs. NCBI nr
Match:
KAF7827258.1 (uncharacterized protein G2W53_018422 [Senna tora])
HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = 0
Query: 2 WNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQATWEKPK 61 +N+W+ RRN + + ++ ++ +KD + S+ CS+ +HA WE+P Sbjct: 230 YNLWH-RRNEVRIEGKSACLEQIWVNSQNFVKD--IFQIHTSEDCSVAHHALTLRWERPT 289 Query: 62 PNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEGIKA 121 P F+KIN DA+ K+ GGIG D SG ++ K++ ++ +LEATAI G++ Sbjct: 290 PPFYKINVDAS-VKQGPDGGIGCVARDGSGRVLAALAKRVPLASDVDILEATAIFTGMEF 349 Query: 122 ISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGI 164 + IQ+ + VE D+ V+ L +S L LI+D I Sbjct: 350 ARDLSIQD---IVVEGDSAVVLGYLTSVVSLRSPLGLILDNI 384
BLAST of Lag0006373 vs. NCBI nr
Match:
CAB4273082.1 (unnamed protein product [Prunus armeniaca])
HSP 1 Score: 76.6 bits (187), Expect = 2.2e-10
Identity = 52/173 (30.06%), Postives = 80/173 (46.24%), Query Frame = 0
Query: 1 MWNIWNIRRNRTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQ------ 60 +W IW I RN ++I + D + ++ + + + + Sbjct: 1086 LWRIWKI-RNGAVFEGTVIEPHVAVECFLDQVHEFRTAQMHGKPLINELPRPPEVQAETV 1145 Query: 61 ATWEKPKPNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATA 120 +W KP K+N DAAW + GG+GW V DS G ++ G K +EA A Sbjct: 1146 TSWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEA 1205 Query: 121 ILEGIKAISNTCIQNGLS-LQVESDALSVIKALNGEDDDQSELKLIVDGILVD 167 I E + A C+Q+GLS L+VESD+L VI+ + GE + + VD I+ D Sbjct: 1206 IREALVA----CVQSGLSKLEVESDSLQVIRMIGGE----WNMDIAVDTIVFD 1249
BLAST of Lag0006373 vs. NCBI nr
Match:
XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])
HSP 1 Score: 75.9 bits (185), Expect = 3.8e-10
Identity = 47/166 (28.31%), Postives = 80/166 (48.19%), Query Frame = 0
Query: 2 WNIWNIRRN---RTQASNSIIPADSVFKLIEDNIKDWENSYLKRSKQCSLRNHASQATWE 61 W IWN R R + S+ + K + ++ E S K + ++ WE Sbjct: 18 WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLN-----NKLKWE 77 Query: 62 KPKPNFWKINPDAAWFKEAGTGGIGWTVHDSSGPLICIGTKKMNHKWEIKLLEATAILEG 121 P + W +N DA+W GGIGW + G ++ G + + +KLLEA+AILEG Sbjct: 78 PPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEG 137 Query: 122 IKAISNTCIQNGLSLQVESDALSVIKALNGEDDDQSELKLIVDGIL 165 ++ ++N + L +E+D+ V LN + +D ++ +V+ IL Sbjct: 138 LRNLTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEIL 176
The following BLAST results are available for this feature:
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G T G G A A C A T A T G G A A T A T C A G A C G A A A T C G A A C A C A A G C A T C C A A C A G T A T C A T C C C A G C A G A C T C A G T C T T C A A A T T A A T A G A A G A T A A C A T C A A A G A T T G G G A A A A C T C T T A C C T T A A G A G A T C A A A G C A A T G C A G C T T G A G G A A C C A T G C T A G T C A A G C T A C C T G G G A G A A G C C G A A G C C G A A T T T T T G G A A A A T T A A C C C A G A C G C T G C T T G G T T C A A A G A A G C A G G T A C T G G A G G C A T T G G T T G G A C A G T G C A T G A C T C G T C T G G G C C C T T A A T T T G C A T T G G C A C G A A G A A G A T G A A T C A C A A A T G G G A G A T C A A A C T T T T G G A A G C T A C A G C C A T C C T G G A A G G A A T C A A G G C G A T T A G C A A T A C C T G C A T T C A A A A T G G G T T G T C G C T G C A A G T T G A A T C A G A C G C T T T G T C A G T T A T C A A A G C C C T G A A T G G T G A A G A C G A T G A C C A G T C G G A G T T G A A G T T G A T C G T C G A T G G C A T C C T A G T T G A T C G T C G A T G A 50 100 150 200 250 300 350 400 450 500 Expect = 2.7E-5 / Score = 26.2 Expect = 5.3E-13 / Score = 48.9 Score = Score = Expect = 3.05545E-9 / Score = 50.3904 Score = Sequence G3DSA:3.30.420.10 PF13456 PTHR33033:SF67 PTHR33033 cd06222 SSF53098
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 64..162 e-value: 2.7E-5 score: 26.2
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 68..163 e-value: 5.3E-13 score: 48.9
None No IPR available PANTHER PTHR33033:SF67 SUBFAMILY NOT NAMED coord: 54..162
None No IPR available PANTHER PTHR33033 POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED coord: 54..162
IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 67..165 e-value: 3.05545E-9 score: 50.3904
IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 64..148
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
molecular_function
GO:0004523
RNA-DNA hybrid ribonuclease activity