Lag0006238 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0006238
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr6: 39779308 .. 39781564 (-)
RNA-Seq Expression	Lag0006238
Synteny	Lag0006238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGTCATCAAACTCTATAAATAGAGGAGGTCACCATTCAGATTCGGGAGATTCAGCCAGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCCCAAGATTGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCTAAAAAGAGATCAACAAGCTAACTGACCGATCAAGAAGATCAACAAGTCAGTAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGACCGATCAAGAGGATCAACAAGTCAGCGGGTCGATCATCCAAGAGGATCAACAAGCTAACAATCTGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTTAACAGACTGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGATCGAACAGATCATCAAGCCAACAGGCCGATCAAGAAGGTCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATTCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAAGAGATCATCAACCTAGCAGGCCGATCATCCAAGAAGCTCAACAAACCAGTCCAAGAAGATCAACAAGCTAGAGAACAAAGTTTATATATTTAAGAGAGAGAATCAGAGGATTAAAGTTAGAGATTGTACACCCACACGCATACAACATTAATACAATATATTATTTATTCCACATGTCTCCATCCCCGAAGTTACGTGTGAACAAATTGGCACGCCCGGTGGGACAATCTCTACCTCTCATCCCTCTCTCTTATCTAAAAACATAAAAGTAAACATGTCATTCAAGACTTCTTTGATGACCGTTGTCAAGAACAAGTCTTACATCAGTTCTACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACCTTGTAGGGGCATATACCAACGACAAGTTTCTTGTTAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAATTTGATGAAGGCGATTGAAGAAAAAGATTCTCATATCGCGCAACTAAAGTGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACATTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTATATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTCGATGGAAGGGGCAATCCTAAACAACATATTGCTCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAGCTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTCTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTAACCAACACTCACACGCATACAACATTAATACATATTTTATGCTAGTTGAATTATACTCTGTGTTATAGGTAATTTTGGACCACCATGGCGTACAAGAAGCTGACGAGGACAACCGGGCAGAAAAAGAGTTGAGGAATGGATCCAAAGGGCAAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGCCAAAGGCCAAAGGCCGAGGCCGACCCTCGACCCGCCTGCGCGGGCCGGGCTTGTCCGGCTCCGCTTGGTCCCCACCGTCTCTGGCCGCCTCGGTTCAGCCTGTTTGAGCAGGTATTTATATCCCTCTTCGCCACCGAAGAAGGGGACTCAAACTCTAATCCCGAAACTCATTATATATTCTCTACTCTCTCCTCTTGCTCTTACTTTTCCGCTCCCCACCGTTCTGCTCGCTGA

mRNA sequence

ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGTCATCAAACTCTATAAATAGAGGAGGTCACCATTCAGATTCGGGAGATTCAGCCAGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCCCAAGATTGACCGATCAAGAAGATCAACAACTAACAAGTCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGATCGAACAGATCATCAAGCCAACAGGCCGATCAAGAAGGTCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATTCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAAGAGATCATCAACCTAGCAGGCCGATCATCCAAGAAGCTCAACAAACCAGTCCAAGAAGATCAACAAGCTAGAGAACAAAGGGCATATACCAACGACAAGTTTCTTGTTAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAATTTGATGAAGGCGATTGAAGAAAAAGATTCTCATATCGCGCAACTAAAGTGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACATTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTATATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTCGATGGAAGGGGCAATCCTAAACAACATATTGCTCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAGCTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTCTTGAATCGCTTCTACAGCACTAGAAGAACCGTAATTTTGGACCACCATGGCGTACAAGAAGCTGACGAGGACAACCGGGCAGAAAAAGAGTTGAGGAATGGATCCAAAGGGCAAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGCCAAAGGCCAAAGGCCGAGGCCGACCCTCGACCCGCCTGCGCGGGCCGGGCTTGTCCGGCTCCGCTTGGTCCCCACCGTCTCTGGCCGCCTCGGTTCAGCCTGTTTGAGCAGGTATTTATATCCCTCTTCGCCACCGAAGAAGGGGACTCAAACTCTAATCCCGAAACTCATTATATATTCTCTACTCTCTCCTCTTGCTCTTACTTTTCCGCTCCCCACCGTTCTGCTCGCTGA

Coding sequence (CDS)

ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGTCATCAAACTCTATAAATAGAGGAGGTCACCATTCAGATTCGGGAGATTCAGCCAGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCCCAAGATTGACCGATCAAGAAGATCAACAACTAACAAGTCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGATCGAACAGATCATCAAGCCAACAGGCCGATCAAGAAGGTCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATTCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAAGAGATCATCAACCTAGCAGGCCGATCATCCAAGAAGCTCAACAAACCAGTCCAAGAAGATCAACAAGCTAGAGAACAAAGGGCATATACCAACGACAAGTTTCTTGTTAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAATTTGATGAAGGCGATTGAAGAAAAAGATTCTCATATCGCGCAACTAAAGTGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACATTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTATATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTCGATGGAAGGGGCAATCCTAAACAACATATTGCTCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAGCTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTCTTGAATCGCTTCTACAGCACTAGAAGAACCGTAATTTTGGACCACCATGGCGTACAAGAAGCTGACGAGGACAACCGGGCAGAAAAAGAGTTGAGGAATGGATCCAAAGGGCAAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGCCAAAGGCCAAAGGCCGAGGCCGACCCTCGACCCGCCTGCGCGGGCCGGGCTTGTCCGGCTCCGCTTGGTCCCCACCGTCTCTGGCCGCCTCGGTTCAGCCTGTTTGAGCAGGTATTTATATCCCTCTTCGCCACCGAAGAAGGGGACTCAAACTCTAATCCCGAAACTCATTATATATTCTCTACTCTCTCCTCTTGCTCTTACTTTTCCGCTCCCCACCGTTCTGCTCGCTGA

Protein sequence

MPRGNWTQAQAHMRSSNSINRGGHHSDSGDSARGREGRVQSILPRLTDQEDQQLTSRSNRSSSQQADPRDQQANRPIKKINKSAGRSSKKINKPTDRTDHQANRPIKKVNKSAGRSSKRINKLTSRFNRSSSQQADPRDHQVSRPIIQEDQQANKPIQEIINLAGRSSKKLNKPVQEDQQAREQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHINNLMKAIEEKDSHIAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQPHCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQHIAHFVETCENAGTRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTRRTVILDHHGVQEADEDNRAEKELRNGSKGQNRQVGRAKTEGVGQRPKAEADPRPACAGRACPAPLGPHRLWPPRFSLFEQVFISLFATEEGDSNSNPETHYIFSTLSSCSYFSAPHRSAR

Homology

[Close]

BLAST of Lag0006238 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 7.1e-79
Identity = 151/243 (62.14%), Postives = 188/243 (77.37%), Query Frame = 0


Query: 169 KKLNKPVQEDQQAREQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHI 228
           ++++KP +     +E  A      L + +    P  ++++VM+T+  T+E+RM E+++ +
Sbjct: 44  EQISKPPKGGIVIKENPAMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKV 103

Query: 229 NNLMKAIEEKDSHIAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQPHCSASVASLS 288
           N LMKA+EE+D  IA LK  IE++  AESS T  IKN +KGK  +Q+ QP  S S+ASLS
Sbjct: 104 NMLMKAVEERDFEIALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLS 163

Query: 289 IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQH 348
           +QQLQ+MI N I+ QYGGP Q   LYSKPYTKRIDN+RMP GYQPPKFQQFDG+GNPKQH
Sbjct: 164 VQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQH 223

Query: 349 IAHFVETCENAGTRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTR 408
           +AHF+ETCE AGTRGDLLVKQ VRTLKGNAFDWYTDLEPESIDSWE+LER+FLNRFYSTR
Sbjct: 224 VAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTR 283

Query: 409 RTV 412
           R V
Sbjct: 284 RIV 286

[Close]

BLAST of Lag0006238 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 7.8e-78
Identity = 168/291 (57.73%), Postives = 204/291 (70.10%), Query Frame = 0


Query: 122 KLTSRFNRSSSQQADPRDHQVSRPIIQEDQQANKPIQEIINLAGRSSKKLNKPVQEDQQA 181
           K  S+ + +S     P     S+ IIQ   Q +   Q I+       K+L +  +     
Sbjct: 5   KAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSIL-------KQLMESPKAGIVI 64

Query: 182 REQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHINNLMKAIEEKDSH 241
           +E   Y ND        L E   DV++VMM +    E  M EM+  IN LMK ++E+D  
Sbjct: 65  KENPLY-NDYDSASSRSLKEAHPDVMSVMMADV-AVETAMAEMERKINLLMKVVDERDHE 124

Query: 242 IAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQP-HCSASVASLSIQQLQDMITNCI 301
           IA LK Q++ +  AESSQT V+K  DKGK  VQ++QP   S SVASLS+QQLQDMITN I
Sbjct: 125 IAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSI 184

Query: 302 RAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQHIAHFVETCENAG 361
           RAQYGGP+Q S +YSKPYTKRIDNLRMP+GYQPPKFQQFDG+GNPKQH+AHFVETCENAG
Sbjct: 185 RAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAG 244

Query: 362 TRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTRRTV 412
           +RGD LV+Q VR+LKGNAF+WYTDLEPESI+SWE+LE+EFLNRFYSTRRTV
Sbjct: 245 SRGDQLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTV 286

[Close]

BLAST of Lag0006238 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 7.8e-78
Identity = 168/291 (57.73%), Postives = 204/291 (70.10%), Query Frame = 0


Query: 122 KLTSRFNRSSSQQADPRDHQVSRPIIQEDQQANKPIQEIINLAGRSSKKLNKPVQEDQQA 181
           K  S+ + +S     P     S+ IIQ   Q +   Q I+       K+L +  +     
Sbjct: 5   KAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSIL-------KQLMESPKAGIVI 64

Query: 182 REQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHINNLMKAIEEKDSH 241
           +E   Y ND        L E   DV++VMM +    E  M EM+  IN LMK ++E+D  
Sbjct: 65  KENPLY-NDYDSASSRSLKEAHPDVMSVMMADV-AVETAMAEMERKINLLMKVVDERDHE 124

Query: 242 IAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQP-HCSASVASLSIQQLQDMITNCI 301
           IA LK Q++ +  AESSQT V+K  DKGK  VQ++QP   S SVASLS+QQLQDMITN I
Sbjct: 125 IAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSI 184

Query: 302 RAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQHIAHFVETCENAG 361
           RAQYGGP+Q S +YSKPYTKRIDNLRMP+GYQPPKFQQFDG+GNPKQH+AHFVETCENAG
Sbjct: 185 RAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAG 244

Query: 362 TRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTRRTV 412
           +RGD LV+Q VR+LKGNAF+WYTDLEPESI+SWE+LE+EFLNRFYSTRRTV
Sbjct: 245 SRGDQLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTV 286

[Close]

BLAST of Lag0006238 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 3.0e-77
Identity = 167/291 (57.39%), Postives = 204/291 (70.10%), Query Frame = 0


Query: 122 KLTSRFNRSSSQQADPRDHQVSRPIIQEDQQANKPIQEIINLAGRSSKKLNKPVQEDQQA 181
           K  S+ + +S     P     S+ IIQ   Q +   Q I+       K+L +  +     
Sbjct: 5   KAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSIL-------KQLMESPKAGIVI 64

Query: 182 REQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHINNLMKAIEEKDSH 241
           +E   Y ND        L E   DV++VMM +    E  M EM+  IN LMK ++E+D  
Sbjct: 65  KENPLY-NDYDSASSRSLKEAHPDVMSVMMADV-AVETAMAEMERKINLLMKVVDERDHE 124

Query: 242 IAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQP-HCSASVASLSIQQLQDMITNCI 301
           IA LK Q++ +  AESSQT V+K  DKGK  VQ++QP   S SVASLS+QQLQDMIT+ I
Sbjct: 125 IAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSI 184

Query: 302 RAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQHIAHFVETCENAG 361
           RAQYGGP+Q S +YSKPYTKRIDNLRMP+GYQPPKFQQFDG+GNPKQH+AHFVETCENAG
Sbjct: 185 RAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAG 244

Query: 362 TRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTRRTV 412
           +RGD LV+Q VR+LKGNAF+WYTDLEPESI+SWE+LE+EFLNRFYSTRRTV
Sbjct: 245 SRGDQLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTV 286

[Close]

BLAST of Lag0006238 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 3.0e-77
Identity = 167/291 (57.39%), Postives = 204/291 (70.10%), Query Frame = 0


Query: 122 KLTSRFNRSSSQQADPRDHQVSRPIIQEDQQANKPIQEIINLAGRSSKKLNKPVQEDQQA 181
           K  S+ + +S     P     S+ IIQ   Q +   Q I+       K+L +  +     
Sbjct: 5   KAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSIL-------KQLMESPKAGIVI 64

Query: 182 REQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHINNLMKAIEEKDSH 241
           +E   Y ND        L E   DV++VMM +    E  M EM+  IN LMK ++E+D  
Sbjct: 65  KENPLY-NDYDSASSRSLKEAHPDVMSVMMADV-AVETAMAEMERKINLLMKVVDERDHE 124

Query: 242 IAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQP-HCSASVASLSIQQLQDMITNCI 301
           IA LK Q++ +  AESSQT V+K  DKGK  VQ++QP   S SVASLS+QQLQDMIT+ I
Sbjct: 125 IAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSI 184

Query: 302 RAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQHIAHFVETCENAG 361
           RAQYGGP+Q S +YSKPYTKRIDNLRMP+GYQPPKFQQFDG+GNPKQH+AHFVETCENAG
Sbjct: 185 RAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAG 244

Query: 362 TRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTRRTV 412
           +RGD LV+Q VR+LKGNAF+WYTDLEPESI+SWE+LE+EFLNRFYSTRRTV
Sbjct: 245 SRGDQLVRQFVRSLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTV 286

[Close]

BLAST of Lag0006238 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.4e-79
Identity = 151/243 (62.14%), Postives = 188/243 (77.37%), Query Frame = 0


Query: 169 KKLNKPVQEDQQAREQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHI 228
           ++++KP +     +E  A      L + +    P  ++++VM+T+  T+E+RM E+++ +
Sbjct: 44  EQISKPPKGGIVIKENPAMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKV 103

Query: 229 NNLMKAIEEKDSHIAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQPHCSASVASLS 288
           N LMKA+EE+D  IA LK  IE++  AESS T  IKN +KGK  +Q+ QP  S S+ASLS
Sbjct: 104 NMLMKAVEERDFEIALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLS 163

Query: 289 IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQH 348
           +QQLQ+MI N I+ QYGGP Q   LYSKPYTKRIDN+RMP GYQPPKFQQFDG+GNPKQH
Sbjct: 164 VQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQH 223

Query: 349 IAHFVETCENAGTRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTR 408
           +AHF+ETCE AGTRGDLLVKQ VRTLKGNAFDWYTDLEPESIDSWE+LER+FLNRFYSTR
Sbjct: 224 VAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTR 283

Query: 409 RTV 412
           R V
Sbjct: 284 RIV 286

[Close]

BLAST of Lag0006238 vs. ExPASy TrEMBL
Match: A0A5D3D4X3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001130 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.2e-77
Identity = 146/243 (60.08%), Postives = 185/243 (76.13%), Query Frame = 0


Query: 169 KKLNKPVQEDQQAREQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHI 228
           ++++KP ++    +E  A      L + +    P  ++++VM+T+   +E+RM E+++ +
Sbjct: 12  EQISKPPKDGVVIKENLAIDKHNSLSERSNEEAPQQNIMSVMVTDVDESEDRMAELEKKV 71

Query: 229 NNLMKAIEEKDSHIAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQPHCSASVASLS 288
           N LMK +EE+D  IA LK  IE++  AESS    +KN DKGK  +Q+ QP  S S+ASLS
Sbjct: 72  NMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLS 131

Query: 289 IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQH 348
           +QQLQ+MI + I+ QYGGP Q   LYSKPYTKRIDNLRMP GYQPPKFQQFDG+GNPKQH
Sbjct: 132 VQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQH 191

Query: 349 IAHFVETCENAGTRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTR 408
           +AHF+ETCE AGTRGDLLVKQ VRTLKGNAFDWY DLEPESID+WE+LER+FLNRFYSTR
Sbjct: 192 VAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTR 251

Query: 409 RTV 412
           R V
Sbjct: 252 RIV 254

[Close]

BLAST of Lag0006238 vs. ExPASy TrEMBL
Match: A0A5A7UUI7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00790 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 9.3e-77
Identity = 147/243 (60.49%), Postives = 183/243 (75.31%), Query Frame = 0


Query: 169 KKLNKPVQEDQQAREQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHI 228
           ++++KP +     +E  A      L + +    P  ++++VM+T   T+E RM E+++ +
Sbjct: 44  EQISKPPKGGIVIKENTAVDEHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKV 103

Query: 229 NNLMKAIEEKDSHIAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQPHCSASVASLS 288
           N LMK +EE+D  IA LK  IE++  AESS    +KN DKGK  +Q+ QP  S S+ASLS
Sbjct: 104 NMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLS 163

Query: 289 IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQH 348
           +QQLQ+MI + I+ QYGGP Q   LYSKPYTKRIDNLRMP GYQPPKFQQFDG+GNPKQH
Sbjct: 164 VQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQH 223

Query: 349 IAHFVETCENAGTRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTR 408
           +AHF+ETCE AGTRGDLLVKQ VRTLKGNAFDWY DLEPESID+WE+LER+FLNRFYSTR
Sbjct: 224 VAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTR 283

Query: 409 RTV 412
           R V
Sbjct: 284 RIV 286

[Close]

BLAST of Lag0006238 vs. ExPASy TrEMBL
Match: A0A5D3BRH6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00640 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.2e-76
Identity = 145/243 (59.67%), Postives = 187/243 (76.95%), Query Frame = 0


Query: 169 KKLNKPVQEDQQAREQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHI 228
           ++++KP +     +E  A      L + +    P  +++++M+T+  T+E+RMT++++ +
Sbjct: 44  EQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMTDLEKKV 103

Query: 229 NNLMKAIEEKDSHIAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQPHCSASVASLS 288
           N LMKA+EE+D  IA LK  IE+   AESS +  IKN +KGK  +Q+ QP  S S+ASLS
Sbjct: 104 NMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIMQESQPQNSTSIASLS 163

Query: 289 IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQH 348
           +QQLQ+MI N I+ QYGGP +   LYSKPYTKRIDN+RMP GYQPPKFQQFDG+GNPKQH
Sbjct: 164 VQQLQEMIANSIKTQYGGPAETFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQH 223

Query: 349 IAHFVETCENAGTRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTR 408
           +A+F+ETCE  GTRGDLLVKQ VRTLKGNAFDWYTDLEPESIDSW++LER+FLNRFYSTR
Sbjct: 224 VAYFIETCETVGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWKQLERDFLNRFYSTR 283

Query: 409 RTV 412
           R V
Sbjct: 284 RIV 286

[Close]

BLAST of Lag0006238 vs. ExPASy TrEMBL
Match: A0A5A7UZD5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004860 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.2e-76
Identity = 145/243 (59.67%), Postives = 187/243 (76.95%), Query Frame = 0


Query: 169 KKLNKPVQEDQQAREQRAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTTEERMTEMQEHI 228
           ++++KP +     +E  A      L + +    P  +++++M+T+  T+E+RMT++++ +
Sbjct: 44  EQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMTDLEKKV 103

Query: 229 NNLMKAIEEKDSHIAQLKCQIENQHIAESSQTQVIKNHDKGKTTVQDDQPHCSASVASLS 288
           N LMKA+EE+D  IA LK  IE+   AESS +  IKN +KGK  +Q+ QP  S S+ASLS
Sbjct: 104 NMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIMQESQPQNSTSIASLS 163

Query: 289 IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRMPIGYQPPKFQQFDGRGNPKQH 348
           +QQLQ+MI N I+ QYGGP +   LYSKPYTKRIDN+RMP GYQPPKFQQFDG+GNPKQH
Sbjct: 164 VQQLQEMIANSIKTQYGGPAETFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQH 223

Query: 349 IAHFVETCENAGTRGDLLVKQLVRTLKGNAFDWYTDLEPESIDSWEELEREFLNRFYSTR 408
           +A+F+ETCE  GTRGDLLVKQ VRTLKGNAFDWYTDLEPESIDSW++LER+FLNRFYSTR
Sbjct: 224 VAYFIETCETVGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWKQLERDFLNRFYSTR 283

Query: 409 RTV 412
           R V
Sbjct: 284 RIV 286

The following BLAST results are available for this feature:

BLAST of Lag0006238 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047477.1	7.1e-79	62.14	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
XP_031742199.1	7.8e-78	57.73	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	7.8e-78	57.73	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031739134.1	3.0e-77	57.39	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	3.0e-77	57.39	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]

BLAST of Lag0006238 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0006238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZU9	3.4e-79	62.14	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5D3D4X3	3.2e-77	60.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UUI7	9.3e-77	60.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BRH6	1.2e-76	59.67	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UZD5	1.2e-76	59.67	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Lag0006238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 228..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 420..435
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 420..464
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 373..411 e-value: 5.6E-5 score: 23.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0006238.1	Lag0006238.1	mRNA