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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTTTGTGCCAGAGAAGGTTAAGAAAGCCTACGTGGCTAGCTTAATTGACGAAGGAGGCAACTGGAAGGAGAATGAGATTAGGAAAATCTTCATCCCTTCTAAAACTGAGAGTATCTTAAATATTCCTCTGAGTAGGAGGGACTCAAATGATGAAATCTTTTGGGGGTTGGATCCGAAAGGAAACTCTACCGTCAAAAGCGCCTATTTCCTAACTCAAAACCTATCAACAGCAGGGGAACCCTCCTCCACGAACCATAAAGCTTTGTGGAAAGACCTTTGGAAATCAAAAGCCATTCCAAAAGAGAAGATTTGCGCCTAG mRNA sequence ATGTTTGTGCCAGAGAAGGTTAAGAAAGCCTACGTGGCTAGCTTAATTGACGAAGGAGGCAACTGGAAGGAGAATGAGATTAGGAAAATCTTCATCCCTTCTAAAACTGAGAGTATCTTAAATATTCCTCTGAGTAGGAGGGACTCAAATGATGAAATCTTTTGGGGGTTGGATCCGAAAGGAAACTCTACCGTCAAAAGCGCCTATTTCCTAACTCAAAACCTATCAACAGCAGGGGAACCCTCCTCCACGAACCATAAAGCTTTGTGGAAAGACCTTTGGAAATCAAAAGCCATTCCAAAAGAGAAGATTTGCGCCTAG Coding sequence (CDS) ATGTTTGTGCCAGAGAAGGTTAAGAAAGCCTACGTGGCTAGCTTAATTGACGAAGGAGGCAACTGGAAGGAGAATGAGATTAGGAAAATCTTCATCCCTTCTAAAACTGAGAGTATCTTAAATATTCCTCTGAGTAGGAGGGACTCAAATGATGAAATCTTTTGGGGGTTGGATCCGAAAGGAAACTCTACCGTCAAAAGCGCCTATTTCCTAACTCAAAACCTATCAACAGCAGGGGAACCCTCCTCCACGAACCATAAAGCTTTGTGGAAAGACCTTTGGAAATCAAAAGCCATTCCAAAAGAGAAGATTTGCGCCTAG Protein sequence MFVPEKVKKAYVASLIDEGGNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKGNSTVKSAYFLTQNLSTAGEPSSTNHKALWKDLWKSKAIPKEKICA
Homology
BLAST of Lag0006135 vs. NCBI nr
Match: KAA0031740.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]) HSP 1 Score: 84.7 bits (208), Expect = 5.1e-13 Identity = 49/107 (45.79%), Postives = 60/107 (56.07%), Query Frame = 0 Query: 1 MFVPEKVKKAYVASLIDEGGNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPK 60 + V E +KK V +LID GNW E I FI SI+NIPL S D+IFWG DPK Sbjct: 44 VLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDPK 103
Query: 61 GNSTVKSAYFLTQNLSTAGEPSSTNHK---ALWKDLWKSKAIPKEKI 105 N VKS Y + + + E SS+N K K +W SKA+PK KI Sbjct: 104 DNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAKI 150
BLAST of Lag0006135 vs. NCBI nr
Match: GAU48804.1 (hypothetical protein TSUD_406370 [Trifolium subterraneum]) HSP 1 Score: 73.9 bits (180), Expect = 9.1e-10 Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 0 Query: 10 AYVASLIDEG-GNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKGNSTVKSA 69 A V+ LID +W N I +IF P + + ILNIPLS R ND++ W + GN +V+SA Sbjct: 17 ACVSQLIDSNTRSWNRNLISQIFSPFEAQQILNIPLSWRLPNDKLIWHWEKDGNFSVRSA 76
Query: 70 YFL---TQNLSTAGEPSSTNHKALWKDLWKSKAIPKEK 104 + + T NL+ E SS+N++ +WK +WK KA P K Sbjct: 77 HHMIKETDNLNIP-EASSSNNQEIWKAVWKIKAPPSVK 113
BLAST of Lag0006135 vs. NCBI nr
Match: XP_023915006.1 (uncharacterized protein LOC112026546 [Quercus suber]) HSP 1 Score: 73.9 bits (180), Expect = 9.1e-10 Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 0 Query: 12 VASLIDEGGN-WKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKGNSTVKSAYF 71 V+SLID WK + +R IF+P + +SIL IPLS D + W + KG+ TVKSAY+ Sbjct: 109 VSSLIDHDSKWWKVDVVRSIFLPFEADSILKIPLSYNLPEDCLVWVGNKKGSFTVKSAYY 168
Query: 72 LTQNL---STAGEPSSTNH-KALWKDLWKSKAIPKEKICA 107 + ++ + GE SS+N LWK +W K PK KI A Sbjct: 169 IASSILDSNEDGESSSSNEMTGLWKRIWHQKIPPKLKIFA 208
BLAST of Lag0006135 vs. NCBI nr
Match: KAF7838995.1 (uncharacterized protein G2W53_007477 [Senna tora]) HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09 Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 0 Query: 3 VPEKVKKAYVASLIDEGGNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKGN 62 V + ++A V SL+DE G+W + IR IF P+ E+IL IPLS R D W L+ G Sbjct: 294 VDDGSREAKVCSLMDEAGSWDQERIRGIFEPTVAEAILKIPLSSRGRGDVWIWSLNGNGI 353
Query: 63 STVKSAYFLTQNLSTAGEPSSTNHKALWKDLWKSKAIPKEKI 105 +VKS+Y S + S T + +LWK +WK+ PK ++ Sbjct: 354 FSVKSSYKAVHR-SYSSSNSWTLYCSLWKKIWKTNLPPKIRL 394
BLAST of Lag0006135 vs. NCBI nr
Match: XP_030926233.1 (uncharacterized protein LOC115952977 [Quercus lobata]) HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09 Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 0 Query: 3 VPEKVKKAYVASLID-EGGNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKG 62 +P +A V+SLID G WK+ +I+++F+P + ++I++IPLS R D + W P G Sbjct: 470 LPSIPPEAKVSSLIDRNSGTWKKEDIKQLFLPHEADAIISIPLSLRMPTDRLVWSKTPSG 529
Query: 63 NSTVKSAYFLTQNLSTAGEPSSTN---HKALWKDLWKSKAIPK 102 N + +SAY L + + A PSS+N ++ W+ W + I K Sbjct: 530 NFSSQSAYRLLASNALATNPSSSNPIPQRSFWRGNWTLRVIHK 572
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0031740.1 | 5.1e-13 | 45.79 | retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa] | [more] |
GAU48804.1 | 9.1e-10 | 42.86 | hypothetical protein TSUD_406370 [Trifolium subterraneum] | [more] |
XP_023915006.1 | 9.1e-10 | 43.00 | uncharacterized protein LOC112026546 [Quercus suber] | [more] |
KAF7838995.1 | 1.2e-09 | 39.22 | uncharacterized protein G2W53_007477 [Senna tora] | [more] |
XP_030926233.1 | 1.2e-09 | 35.92 | uncharacterized protein LOC115952977 [Quercus lobata] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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