Lag0006135 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0006135
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzf-RVT domain-containing protein
Locationchr6: 38029725 .. 38030045 (+)
RNA-Seq ExpressionLag0006135
SyntenyLag0006135
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTGCCAGAGAAGGTTAAGAAAGCCTACGTGGCTAGCTTAATTGACGAAGGAGGCAACTGGAAGGAGAATGAGATTAGGAAAATCTTCATCCCTTCTAAAACTGAGAGTATCTTAAATATTCCTCTGAGTAGGAGGGACTCAAATGATGAAATCTTTTGGGGGTTGGATCCGAAAGGAAACTCTACCGTCAAAAGCGCCTATTTCCTAACTCAAAACCTATCAACAGCAGGGGAACCCTCCTCCACGAACCATAAAGCTTTGTGGAAAGACCTTTGGAAATCAAAAGCCATTCCAAAAGAGAAGATTTGCGCCTAG

mRNA sequence

ATGTTTGTGCCAGAGAAGGTTAAGAAAGCCTACGTGGCTAGCTTAATTGACGAAGGAGGCAACTGGAAGGAGAATGAGATTAGGAAAATCTTCATCCCTTCTAAAACTGAGAGTATCTTAAATATTCCTCTGAGTAGGAGGGACTCAAATGATGAAATCTTTTGGGGGTTGGATCCGAAAGGAAACTCTACCGTCAAAAGCGCCTATTTCCTAACTCAAAACCTATCAACAGCAGGGGAACCCTCCTCCACGAACCATAAAGCTTTGTGGAAAGACCTTTGGAAATCAAAAGCCATTCCAAAAGAGAAGATTTGCGCCTAG

Coding sequence (CDS)

ATGTTTGTGCCAGAGAAGGTTAAGAAAGCCTACGTGGCTAGCTTAATTGACGAAGGAGGCAACTGGAAGGAGAATGAGATTAGGAAAATCTTCATCCCTTCTAAAACTGAGAGTATCTTAAATATTCCTCTGAGTAGGAGGGACTCAAATGATGAAATCTTTTGGGGGTTGGATCCGAAAGGAAACTCTACCGTCAAAAGCGCCTATTTCCTAACTCAAAACCTATCAACAGCAGGGGAACCCTCCTCCACGAACCATAAAGCTTTGTGGAAAGACCTTTGGAAATCAAAAGCCATTCCAAAAGAGAAGATTTGCGCCTAG

Protein sequence

MFVPEKVKKAYVASLIDEGGNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKGNSTVKSAYFLTQNLSTAGEPSSTNHKALWKDLWKSKAIPKEKICA
Homology
BLAST of Lag0006135 vs. NCBI nr
Match: KAA0031740.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 5.1e-13
Identity = 49/107 (45.79%), Postives = 60/107 (56.07%), Query Frame = 0

Query: 1   MFVPEKVKKAYVASLIDEGGNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPK 60
           + V E +KK  V +LID  GNW E  I   FI     SI+NIPL    S D+IFWG DPK
Sbjct: 44  VLVCEDLKKMRVLNLIDFDGNWDEELIISYFIKFAYVSIINIPLENPKSKDDIFWGSDPK 103

Query: 61  GNSTVKSAYFLTQNLSTAGEPSSTNHK---ALWKDLWKSKAIPKEKI 105
            N  VKS Y +  +   + E SS+N K      K +W SKA+PK KI
Sbjct: 104 DNFLVKSVYRIAIDGKDSFEASSSNRKNQNKRCKAIWSSKALPKAKI 150

BLAST of Lag0006135 vs. NCBI nr
Match: GAU48804.1 (hypothetical protein TSUD_406370 [Trifolium subterraneum])

HSP 1 Score: 73.9 bits (180), Expect = 9.1e-10
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 10  AYVASLIDEG-GNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKGNSTVKSA 69
           A V+ LID    +W  N I +IF P + + ILNIPLS R  ND++ W  +  GN +V+SA
Sbjct: 17  ACVSQLIDSNTRSWNRNLISQIFSPFEAQQILNIPLSWRLPNDKLIWHWEKDGNFSVRSA 76

Query: 70  YFL---TQNLSTAGEPSSTNHKALWKDLWKSKAIPKEK 104
           + +   T NL+   E SS+N++ +WK +WK KA P  K
Sbjct: 77  HHMIKETDNLNIP-EASSSNNQEIWKAVWKIKAPPSVK 113

BLAST of Lag0006135 vs. NCBI nr
Match: XP_023915006.1 (uncharacterized protein LOC112026546 [Quercus suber])

HSP 1 Score: 73.9 bits (180), Expect = 9.1e-10
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 0

Query: 12  VASLIDEGGN-WKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKGNSTVKSAYF 71
           V+SLID     WK + +R IF+P + +SIL IPLS     D + W  + KG+ TVKSAY+
Sbjct: 109 VSSLIDHDSKWWKVDVVRSIFLPFEADSILKIPLSYNLPEDCLVWVGNKKGSFTVKSAYY 168

Query: 72  LTQNL---STAGEPSSTNH-KALWKDLWKSKAIPKEKICA 107
           +  ++   +  GE SS+N    LWK +W  K  PK KI A
Sbjct: 169 IASSILDSNEDGESSSSNEMTGLWKRIWHQKIPPKLKIFA 208

BLAST of Lag0006135 vs. NCBI nr
Match: KAF7838995.1 (uncharacterized protein G2W53_007477 [Senna tora])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 0

Query: 3   VPEKVKKAYVASLIDEGGNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKGN 62
           V +  ++A V SL+DE G+W +  IR IF P+  E+IL IPLS R   D   W L+  G 
Sbjct: 294 VDDGSREAKVCSLMDEAGSWDQERIRGIFEPTVAEAILKIPLSSRGRGDVWIWSLNGNGI 353

Query: 63  STVKSAYFLTQNLSTAGEPSSTNHKALWKDLWKSKAIPKEKI 105
            +VKS+Y      S +   S T + +LWK +WK+   PK ++
Sbjct: 354 FSVKSSYKAVHR-SYSSSNSWTLYCSLWKKIWKTNLPPKIRL 394

BLAST of Lag0006135 vs. NCBI nr
Match: XP_030926233.1 (uncharacterized protein LOC115952977 [Quercus lobata])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 0

Query: 3   VPEKVKKAYVASLID-EGGNWKENEIRKIFIPSKTESILNIPLSRRDSNDEIFWGLDPKG 62
           +P    +A V+SLID   G WK+ +I+++F+P + ++I++IPLS R   D + W   P G
Sbjct: 470 LPSIPPEAKVSSLIDRNSGTWKKEDIKQLFLPHEADAIISIPLSLRMPTDRLVWSKTPSG 529

Query: 63  NSTVKSAYFLTQNLSTAGEPSSTN---HKALWKDLWKSKAIPK 102
           N + +SAY L  + + A  PSS+N    ++ W+  W  + I K
Sbjct: 530 NFSSQSAYRLLASNALATNPSSSNPIPQRSFWRGNWTLRVIHK 572

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031740.15.1e-1345.79retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa][more]
GAU48804.19.1e-1042.86hypothetical protein TSUD_406370 [Trifolium subterraneum][more]
XP_023915006.19.1e-1043.00uncharacterized protein LOC112026546 [Quercus suber][more]
KAF7838995.11.2e-0939.22uncharacterized protein G2W53_007477 [Senna tora][more]
XP_030926233.11.2e-0935.92uncharacterized protein LOC115952977 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0006135.1Lag0006135.1mRNA