Lag0005430 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005430
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr6: 17492713 .. 17493093 (+)
RNA-Seq Expression	Lag0005430
Synteny	Lag0005430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCAAAGAAAGCTCCTGTGAAGGTTACCACATCAAGCGACTCTTACACTAGTCCTGTCATTCATAGTCGTTCCCAAGAAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCATCTAAGGATAAGGTTGCAGTCAAAGACATTCCGTTGTTCAAATTTGTCATTCCAACATCTAAGCAGCCAAACGATACACTAAATCCTGATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTCATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAACTGCAAAATTGA

mRNA sequence

ATGGAACCAAAGAAAGCTCCTGTGAAGGTTACCACATCAAGCGACTCTTACACTAGTCCTGTCATTCATAGTCGTTCCCAAGAAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCATCTAAGGATAAGGTTGCAGTCAAAGACATTCCGTTGTTCAAATTTGTCATTCCAACATCTAAGCAGCCAAACGATACACTAAATCCTGATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTCATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAACTGCAAAATTGA

Coding sequence (CDS)

ATGGAACCAAAGAAAGCTCCTGTGAAGGTTACCACATCAAGCGACTCTTACACTAGTCCTGTCATTCATAGTCGTTCCCAAGAAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCATCTAAGGATAAGGTTGCAGTCAAAGACATTCCGTTGTTCAAATTTGTCATTCCAACATCTAAGCAGCCAAACGATACACTAAATCCTGATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTCATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAACTGCAAAATTGA

Protein sequence

MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYLKNQLQN

Homology

[Close]

BLAST of Lag0005430 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

[Close]

BLAST of Lag0005430 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

[Close]

BLAST of Lag0005430 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

[Close]

BLAST of Lag0005430 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

[Close]

BLAST of Lag0005430 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

The following BLAST results are available for this feature:

BLAST of Lag0005430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	3.8e-15	47.20	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	3.8e-15	47.20	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	3.8e-15	47.20	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	3.8e-15	47.20	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031737053.1	3.8e-15	47.20	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]

BLAST of Lag0005430 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005430.1	Lag0005430.1	mRNA