Lag0005430 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005430
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr6: 17492713 .. 17493093 (+)
RNA-Seq ExpressionLag0005430
SyntenyLag0005430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCAAAGAAAGCTCCTGTGAAGGTTACCACATCAAGCGACTCTTACACTAGTCCTGTCATTCATAGTCGTTCCCAAGAAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCATCTAAGGATAAGGTTGCAGTCAAAGACATTCCGTTGTTCAAATTTGTCATTCCAACATCTAAGCAGCCAAACGATACACTAAATCCTGATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTCATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAACTGCAAAATTGA

mRNA sequence

ATGGAACCAAAGAAAGCTCCTGTGAAGGTTACCACATCAAGCGACTCTTACACTAGTCCTGTCATTCATAGTCGTTCCCAAGAAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCATCTAAGGATAAGGTTGCAGTCAAAGACATTCCGTTGTTCAAATTTGTCATTCCAACATCTAAGCAGCCAAACGATACACTAAATCCTGATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTCATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAACTGCAAAATTGA

Coding sequence (CDS)

ATGGAACCAAAGAAAGCTCCTGTGAAGGTTACCACATCAAGCGACTCTTACACTAGTCCTGTCATTCATAGTCGTTCCCAAGAAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCATCTAAGGATAAGGTTGCAGTCAAAGACATTCCGTTGTTCAAATTTGTCATTCCAACATCTAAGCAGCCAAACGATACACTAAATCCTGATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTCATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAACTGCAAAATTGA

Protein sequence

MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYLKNQLQN
Homology
[Close]
BLAST of Lag0005430 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0 

Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

[Close]
BLAST of Lag0005430 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0 

Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

[Close]
BLAST of Lag0005430 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0 

Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

[Close]
BLAST of Lag0005430 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0 

Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

[Close]
BLAST of Lag0005430 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 0 

Query: 1   MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 60
           M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 61  IPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAVDERDLEIAYL 120
            PL+      S +     +PDVMSVMM DV  +  MAEMERK+NL MK VDERD EIA L
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQLQ 126
           K Q+Q
Sbjct: 121 KEQMQ 124

The following BLAST results are available for this feature:
BLAST of Lag0005430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031739134.13.8e-1547.20uncharacterized protein LOC116402863 [Cucumis sativus][more]
XP_031742032.13.8e-1547.20uncharacterized protein LOC116404025 [Cucumis sativus][more]
XP_031742199.13.8e-1547.20uncharacterized protein LOC105435721 [Cucumis sativus][more]
XP_031735972.13.8e-1547.20uncharacterized protein LOC116401693 [Cucumis sativus][more]
XP_031737053.13.8e-1547.20uncharacterized protein LOC116402138 [Cucumis sativus][more]
BLAST of Lag0005430 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005430.1Lag0005430.1mRNA