Lag0005410 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005410
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Location	chr6: 17017120 .. 17017538 (-)
RNA-Seq Expression	Lag0005410
Synteny	Lag0005410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTCTCTCGTCCTCATCTACGGTTGGTTTTCGTTTTCCGTTTACTTACCTCTCTCTCTCTCCGTTGGAGGTGAGTTCCTTTCGATTTTTTTTCTGATTTTTCCTCCTTCTCTCGCTCGGATCTGGTTTTCTTAACCTCGCCTCCGTTCAGTGCCTTAAACGAGCCAGAGAGCTTCCAATCGAGAAGCGAAGAAGATCCGAAATAGTCCGCCAAAGAAGACCCACAAAGGAAATCGCAAAGCTAGACCGCCCAACGTCGAAATCGGGTGGAAGAGGACGAAGAAGATCAATTTGGAGAAACCGATCGGGTGGATGATAATGGACTTTCTGGATAAGCTTGAACGGCTAATGGAGAGGGAATTTGGGTCGACGGAGTACTGGCCAAAGTGGGAGAGATTGTGGGCAAAGGGATAA

mRNA sequence

ATGTTCTCTCTCTCGTCCTCATCTACGGTTGGTTTTCGTTTTCCGTTTACTTACCTCTCTCTCTCTCCGTTGGAGAGAGCTTCCAATCGAGAAGCGAAGAAGATCCGAAATAGTCCGCCAAAGAAGACCCACAAAGGAAATCGCAAAGCTAGACCGCCCAACGTCGAAATCGGGTGGAAGAGGACGAAGAAGATCAATTTGGAGAAACCGATCGGGTGGATGATAATGGACTTTCTGGATAAGCTTGAACGGCTAATGGAGAGGGAATTTGGGTCGACGGAGTACTGGCCAAAGTGGGAGAGATTGTGGGCAAAGGGATAA

Coding sequence (CDS)

ATGTTCTCTCTCTCGTCCTCATCTACGGTTGGTTTTCGTTTTCCGTTTACTTACCTCTCTCTCTCTCCGTTGGAGAGAGCTTCCAATCGAGAAGCGAAGAAGATCCGAAATAGTCCGCCAAAGAAGACCCACAAAGGAAATCGCAAAGCTAGACCGCCCAACGTCGAAATCGGGTGGAAGAGGACGAAGAAGATCAATTTGGAGAAACCGATCGGGTGGATGATAATGGACTTTCTGGATAAGCTTGAACGGCTAATGGAGAGGGAATTTGGGTCGACGGAGTACTGGCCAAAGTGGGAGAGATTGTGGGCAAAGGGATAA

Protein sequence

MFSLSSSSTVGFRFPFTYLSLSPLERASNREAKKIRNSPPKKTHKGNRKARPPNVEIGWKRTKKINLEKPIGWMIMDFLDKLERLMEREFGSTEYWPKWERLWAKG

Homology

[Close]

BLAST of Lag0005410 vs. NCBI nr
Match: XP_022985263.1 (uncharacterized protein LOC111483306 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 5.1e-13
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 5   SSSSTVGFRFPFTYLSLSPLERASNREAKKIRNSPPKKTHKGNR---KARPPNVEIGWKR 64
           S SS     FP        L +  +   +K R S   +  + ++   K  PPN EIGWKR
Sbjct: 43  SESSESDPNFPSPDPDFGALNQPESFPVEKRRRSEIVRQRRPSKEIVKPEPPNFEIGWKR 102

Query: 65  TKKINLEKPIGWMIMDFLDKLERLMEREFGSTEYWPK 99
           TK+INLEKP+GWMIMDFL+KLE LMEREFGSTE   K
Sbjct: 103 TKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAK 139

[Close]

BLAST of Lag0005410 vs. NCBI nr
Match: XP_022932131.1 (uncharacterized protein LOC111438454 [Cucurbita moschata] >KAG6577442.1 hypothetical protein SDJN03_25016, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015514.1 hypothetical protein SDJN02_23150, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.7 bits (208), Expect = 5.1e-13
Identity = 50/97 (51.55%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 5   SSSSTVGFRFPFTYLSLSPLERASNREAKKIRNSP---PKKTHKGNRKARPPNVEIGWKR 64
           S SS     FP        L +  +   +K R S     ++  K   K  PPN EIGWKR
Sbjct: 43  SESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGWKR 102

Query: 65  TKKINLEKPIGWMIMDFLDKLERLMEREFGSTEYWPK 99
           TK+INLEKP+GWMIMDFL+KLE LMEREFGSTE   K
Sbjct: 103 TKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAK 139

[Close]

BLAST of Lag0005410 vs. NCBI nr
Match: XP_004152910.2 (uncharacterized protein LOC101210146 [Cucumis sativus] >KGN56162.1 hypothetical protein Csa_011377 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 5.1e-13
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 49  KARPPNVEIGWKRTKKINLEKPIGWMIMDFLDKLERLMEREFGSTEYWPK 99
           K  PPN EIGWKRTK+I++EKPIGWMIMDFL+KLE LMEREFGSTE   K
Sbjct: 109 KPEPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAK 158

[Close]

BLAST of Lag0005410 vs. NCBI nr
Match: XP_008452345.1 (PREDICTED: uncharacterized protein LOC103493403 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 6.7e-13
Identity = 49/88 (55.68%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 14  FPFTYLSLSPLERASNREAKKIRNSPPKKTHKGN---RKARPPNVEIGWKRTKKINLEKP 73
           FP    + S L +      +K R S   +  K      K  PPN EIGWKRTK+INLEKP
Sbjct: 52  FPSPDPNFSALNQPETFPIEKRRRSEILRQRKPTTEIAKPEPPNFEIGWKRTKEINLEKP 111

Query: 74  IGWMIMDFLDKLERLMEREFGSTEYWPK 99
           IGWMIMDFL+KLE LMEREFGSTE   K
Sbjct: 112 IGWMIMDFLEKLEGLMEREFGSTELLAK 139

[Close]

BLAST of Lag0005410 vs. NCBI nr
Match: XP_023520419.1 (uncharacterized protein LOC111783811 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 8.8e-13
Identity = 50/97 (51.55%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 5   SSSSTVGFRFPFTYLSLSPLERASNREAKKIRNSP---PKKTHKGNRKARPPNVEIGWKR 64
           S SS     FP        L +  +   +K R S     ++  K   K  PPN EIGWKR
Sbjct: 43  SESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPDPPNFEIGWKR 102

Query: 65  TKKINLEKPIGWMIMDFLDKLERLMEREFGSTEYWPK 99
           TK+INLEKP+GWMIMDFL+KLE LMEREFGSTE   K
Sbjct: 103 TKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAK 139

The following BLAST results are available for this feature:

BLAST of Lag0005410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985263.1	5.1e-13	50.52	uncharacterized protein LOC111483306 [Cucurbita maxima]	[more]
XP_022932131.1	5.1e-13	51.55	uncharacterized protein LOC111438454 [Cucurbita moschata] >KAG6577442.1 hypothet...	[more]
XP_004152910.2	5.1e-13	78.00	uncharacterized protein LOC101210146 [Cucumis sativus] >KGN56162.1 hypothetical ...	[more]
XP_008452345.1	6.7e-13	55.68	PREDICTED: uncharacterized protein LOC103493403 [Cucumis melo]	[more]
XP_023520419.1	8.8e-13	51.55	uncharacterized protein LOC111783811 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0005410 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..55
None	No IPR available	PANTHER	PTHR36719	OS01G0676200 PROTEIN	coord: 30..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005410.1	Lag0005410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
cellular_component	GO:0009570	chloroplast stroma