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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCATGTGATGCATCTTAGCGATGTAACAGAGGAAAGAGTGGTTTTGTCATTCGTTATAGCGAACGATCGCACTGTAGATGTAGGGAAAGTTATCTATGCTTCCATGCGTCGAATTCACAGAGGAGCCACCAGCATAGGACTAGGACACCCTTCCCTCATCACAACACTCTGCAAGAATGCTGGGTCGAGTGGGCCCCGAGAGGAAATTAGTCACCCTGCAGTTGTGATTGACGGGAACTTTATTCTGATTAGACTTAGGAGCCTAGGCCTAGGTAGCCCAACCAACACCTCCGCCACAACAGGTAGAGCCAGCAGATGAGCCCTAGAGCAGAAAGAGCAACCCAACGTTGAGCATCCACCTCAAACACTTGAGGCATTAAAGGAGAGGATGAATCATATAAGACTCGTGCAACTGCGCCAGTACGAGAGACAGCAGCGTAGGAGGCTCGACACTTCAGACAATCTGAGTCACAGTTCACTTACATTCAACAGTACATGATTGCCTCAGCGTCTGGACAGCCTCTTCCACGTCGTTGTCGCCTTATGAGTCTCCTGAGGATGAGGAGTGA mRNA sequence ATGCATGTGATGCATCTTAGCGATGTAACAGAGGAAAGAGTGGTTTTGTCATTCGTTATAGCGAACGATCGCACTGTAGATGTAGGGAAAGTTATCTATGCTTCCATGCGTCGAATTCACAGAGGAGCCACCAGCATAGGACTAGGACACCCTTCCCTCATCACAACACTCTGCAAGAATGCTGGGTCGAGTGGGCCCCGAGAGGAAATTAGTCACCCTGCAGTTGTGATTGACGGGAACTTTATTCTGATTAGACTTAGGAGCCTAGGCCTAGGTAGCCCAACCAACACCTCCGCCACAACAGTACATGATTGCCTCAGCGTCTGGACAGCCTCTTCCACGTCGTTGTCGCCTTATGAGTCTCCTGAGGATGAGGAGTGA Coding sequence (CDS) ATGCATGTGATGCATCTTAGCGATGTAACAGAGGAAAGAGTGGTTTTGTCATTCGTTATAGCGAACGATCGCACTGTAGATGTAGGGAAAGTTATCTATGCTTCCATGCGTCGAATTCACAGAGGAGCCACCAGCATAGGACTAGGACACCCTTCCCTCATCACAACACTCTGCAAGAATGCTGGGTCGAGTGGGCCCCGAGAGGAAATTAGTCACCCTGCAGTTGTGATTGACGGGAACTTTATTCTGATTAGACTTAGGAGCCTAGGCCTAGGTAGCCCAACCAACACCTCCGCCACAACAGTACATGATTGCCTCAGCGTCTGGACAGCCTCTTCCACGTCGTTGTCGCCTTATGAGTCTCCTGAGGATGAGGAGTGA Protein sequence MHVMHLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAGSSGPREEISHPAVVIDGNFILIRLRSLGLGSPTNTSATTVHDCLSVWTASSTSLSPYESPEDEE
Homology
BLAST of Lag0005401 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]) HSP 1 Score: 75.1 bits (183), Expect = 4.8e-10 Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 3 VMHLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAG 62
V H S VT+ER +L + IA R+VDVGKVI+ S+ I + + GLGH SLIT LC+N G
Sbjct: 181 VAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNEG 240
Query: 63 SS-GPREEISHPAVVIDGNFIL 84
+EE+ P ++D NFI+
Sbjct: 241 VVWNEKEELVDPKPIMDKNFIM 262
BLAST of Lag0005401 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo]) HSP 1 Score: 75.1 bits (183), Expect = 4.8e-10 Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 3 VMHLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAG 62
V H S VT+ER +L + IA R+VDVGKVI+ S+ I + + GLGH SLIT LC+N G
Sbjct: 119 VAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNEG 178
Query: 63 SS-GPREEISHPAVVIDGNFIL 84
+EE+ P ++D NFI+
Sbjct: 179 VVWNEKEELVDPKPIMDKNFIM 200
BLAST of Lag0005401 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus]) HSP 1 Score: 72.0 bits (175), Expect = 4.1e-09 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 0
Query: 3 VMHLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAG 62
V H S VT+ER +L + IA R+VDVGKVI S+ I + + GLGH SLIT LC+N G
Sbjct: 181 VAHTSSVTKERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRNEG 240
Query: 63 SS-GPREEISHPAVVIDGNFIL 84
+EE+ P ++D +FI+
Sbjct: 241 VVWNEKEELVDPKPIMDKSFIM 262
BLAST of Lag0005401 vs. NCBI nr
Match: PON63612.1 (hypothetical protein TorRG33x02_275910, partial [Trema orientale]) HSP 1 Score: 61.6 bits (148), Expect = 5.5e-06 Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 7 SDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAG-SSG 66
S VT+ERVVLS+ I TVDVGKVI +S I RG+T +GLGH +LI LC+ +
Sbjct: 16 SGVTKERVVLSYAILKGLTVDVGKVIQSSKLHIARGSTVVGLGHSTLIYELCRQTDVPTH 75
Query: 67 PREEISHP 74
P E + +P
Sbjct: 76 PGEVVVYP 83
BLAST of Lag0005401 vs. NCBI nr
Match: PON57987.1 (hypothetical protein TorRG33x02_292470 [Trema orientale]) HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05 Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0
Query: 5 HLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNA 62
H+++VT +RV L F I +RT+DVGKVI +S+ RG T++ L HPSLI LC NA
Sbjct: 61 HVTEVTTDRVELFFCILTERTIDVGKVIKSSILHTIRGKTTLSLTHPSLIMGLCLNA 117
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0033353.1 | 4.8e-10 | 47.56 | putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]... | [more] |
| XP_008458668.1 | 4.8e-10 | 47.56 | PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo] | [more] |
| KGN46897.1 | 4.1e-09 | 46.34 | hypothetical protein Csa_020731 [Cucumis sativus] | [more] |
| PON63612.1 | 5.5e-06 | 50.00 | hypothetical protein TorRG33x02_275910, partial [Trema orientale] | [more] |
| PON57987.1 | 1.6e-05 | 52.63 | hypothetical protein TorRG33x02_292470 [Trema orientale] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0044237 |
cellular metabolic process |
| molecular_function |
GO:0016301 |
kinase activity |
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