Lag0005401 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0005401
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAA_kinase domain-containing protein
Locationchr6: 16633962 .. 16634532 (+)
RNA-Seq ExpressionLag0005401
SyntenyLag0005401
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTGATGCATCTTAGCGATGTAACAGAGGAAAGAGTGGTTTTGTCATTCGTTATAGCGAACGATCGCACTGTAGATGTAGGGAAAGTTATCTATGCTTCCATGCGTCGAATTCACAGAGGAGCCACCAGCATAGGACTAGGACACCCTTCCCTCATCACAACACTCTGCAAGAATGCTGGGTCGAGTGGGCCCCGAGAGGAAATTAGTCACCCTGCAGTTGTGATTGACGGGAACTTTATTCTGATTAGACTTAGGAGCCTAGGCCTAGGTAGCCCAACCAACACCTCCGCCACAACAGGTAGAGCCAGCAGATGAGCCCTAGAGCAGAAAGAGCAACCCAACGTTGAGCATCCACCTCAAACACTTGAGGCATTAAAGGAGAGGATGAATCATATAAGACTCGTGCAACTGCGCCAGTACGAGAGACAGCAGCGTAGGAGGCTCGACACTTCAGACAATCTGAGTCACAGTTCACTTACATTCAACAGTACATGATTGCCTCAGCGTCTGGACAGCCTCTTCCACGTCGTTGTCGCCTTATGAGTCTCCTGAGGATGAGGAGTGA

mRNA sequence

ATGCATGTGATGCATCTTAGCGATGTAACAGAGGAAAGAGTGGTTTTGTCATTCGTTATAGCGAACGATCGCACTGTAGATGTAGGGAAAGTTATCTATGCTTCCATGCGTCGAATTCACAGAGGAGCCACCAGCATAGGACTAGGACACCCTTCCCTCATCACAACACTCTGCAAGAATGCTGGGTCGAGTGGGCCCCGAGAGGAAATTAGTCACCCTGCAGTTGTGATTGACGGGAACTTTATTCTGATTAGACTTAGGAGCCTAGGCCTAGGTAGCCCAACCAACACCTCCGCCACAACAGTACATGATTGCCTCAGCGTCTGGACAGCCTCTTCCACGTCGTTGTCGCCTTATGAGTCTCCTGAGGATGAGGAGTGA

Coding sequence (CDS)

ATGCATGTGATGCATCTTAGCGATGTAACAGAGGAAAGAGTGGTTTTGTCATTCGTTATAGCGAACGATCGCACTGTAGATGTAGGGAAAGTTATCTATGCTTCCATGCGTCGAATTCACAGAGGAGCCACCAGCATAGGACTAGGACACCCTTCCCTCATCACAACACTCTGCAAGAATGCTGGGTCGAGTGGGCCCCGAGAGGAAATTAGTCACCCTGCAGTTGTGATTGACGGGAACTTTATTCTGATTAGACTTAGGAGCCTAGGCCTAGGTAGCCCAACCAACACCTCCGCCACAACAGTACATGATTGCCTCAGCGTCTGGACAGCCTCTTCCACGTCGTTGTCGCCTTATGAGTCTCCTGAGGATGAGGAGTGA

Protein sequence

MHVMHLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAGSSGPREEISHPAVVIDGNFILIRLRSLGLGSPTNTSATTVHDCLSVWTASSTSLSPYESPEDEE
Homology
[Close]
BLAST of Lag0005401 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-10
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0 

Query: 3   VMHLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAG 62
           V H S VT+ER +L + IA  R+VDVGKVI+ S+  I +   + GLGH SLIT LC+N G
Sbjct: 181 VAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNEG 240

Query: 63  SS-GPREEISHPAVVIDGNFIL 84
                +EE+  P  ++D NFI+
Sbjct: 241 VVWNEKEELVDPKPIMDKNFIM 262

[Close]
BLAST of Lag0005401 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-10
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0 

Query: 3   VMHLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAG 62
           V H S VT+ER +L + IA  R+VDVGKVI+ S+  I +   + GLGH SLIT LC+N G
Sbjct: 119 VAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNEG 178

Query: 63  SS-GPREEISHPAVVIDGNFIL 84
                +EE+  P  ++D NFI+
Sbjct: 179 VVWNEKEELVDPKPIMDKNFIM 200

[Close]
BLAST of Lag0005401 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-09
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 0 

Query: 3   VMHLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAG 62
           V H S VT+ER +L + IA  R+VDVGKVI  S+  I +   + GLGH SLIT LC+N G
Sbjct: 181 VAHTSSVTKERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRNEG 240

Query: 63  SS-GPREEISHPAVVIDGNFIL 84
                +EE+  P  ++D +FI+
Sbjct: 241 VVWNEKEELVDPKPIMDKSFIM 262

[Close]
BLAST of Lag0005401 vs. NCBI nr
Match: PON63612.1 (hypothetical protein TorRG33x02_275910, partial [Trema orientale])

HSP 1 Score: 61.6 bits (148), Expect = 5.5e-06
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 0 

Query: 7  SDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNAG-SSG 66
          S VT+ERVVLS+ I    TVDVGKVI +S   I RG+T +GLGH +LI  LC+     + 
Sbjct: 16 SGVTKERVVLSYAILKGLTVDVGKVIQSSKLHIARGSTVVGLGHSTLIYELCRQTDVPTH 75

Query: 67 PREEISHP 74
          P E + +P
Sbjct: 76 PGEVVVYP 83

[Close]
BLAST of Lag0005401 vs. NCBI nr
Match: PON57987.1 (hypothetical protein TorRG33x02_292470 [Trema orientale])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 5   HLSDVTEERVVLSFVIANDRTVDVGKVIYASMRRIHRGATSIGLGHPSLITTLCKNA 62
           H+++VT +RV L F I  +RT+DVGKVI +S+    RG T++ L HPSLI  LC NA
Sbjct: 61  HVTEVTTDRVELFFCILTERTIDVGKVIKSSILHTIRGKTTLSLTHPSLIMGLCLNA 117

The following BLAST results are available for this feature:
BLAST of Lag0005401 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033353.14.8e-1047.56putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]... [more]
XP_008458668.14.8e-1047.56PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo][more]
KGN46897.14.1e-0946.34hypothetical protein Csa_020731 [Cucumis sativus][more]
PON63612.15.5e-0650.00hypothetical protein TorRG33x02_275910, partial [Trema orientale][more]
PON57987.11.6e-0552.63hypothetical protein TorRG33x02_292470 [Trema orientale][more]
BLAST of Lag0005401 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0005401.1Lag0005401.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
molecular_function GO:0016301 kinase activity