Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATTCTCGTTCTCATGGTGGTTTTCATACTTCTCATCGTCAAATTCCATTTGTTTTGCTACACACCTCTTCATTCTCTGTTCCTCAAGAAACATTGTTGATCGTTCAGAGTTCGAGAGCATTTAATTTCAGAAAACCCCTTTTCCCCAGTTTTGATTTACTAGTTAGAGGCTTTTGCGATCTGAATTCGGATTCGGATTCCAAAATTGAATGTGAGAAGAGTGAGGATGATGATCTTGAGCGTAGTTCAAGGGCGGATTCAACCCAAGTTGATCGTGTATGCAAGGTGATCGATGAATTGTTTGCGTTAGATAGGAACATGGAGGCTATTTTTGATGAATGTGGTTTCAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCAGCATTTAGATTCTTCTGTTGGGCTGCTTAG
mRNA sequence
ATGTTTGATTCTCGTTCTCATGGTGGTTTTCATACTTCTCATCGTCAAATTCCATTTGTTTTGCTACACACCTCTTCATTCTCTGTTCCTCAAGAAACATTGTTGATCGTTCAGAGTTCGAGAGCATTTAATTTCAGAAAACCCCTTTTCCCCAGTTTTGATTTACTAGTTAGAGGCTTTTGCGATCTGAATTCGGATTCGGATTCCAAAATTGAATGTGAGAAGAGTGAGGATGATGATCTTGAGCGTAGTTCAAGGGCGGATTCAACCCAAGTTGATCGTGTATGCAAGGTGATCGATGAATTGTTTGCGTTAGATAGGAACATGGAGGCTATTTTTGATGAATGTGGTTTCAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCAGCATTTAGATTCTTCTGTTGGGCTGCTTAG
Coding sequence (CDS)
ATGTTTGATTCTCGTTCTCATGGTGGTTTTCATACTTCTCATCGTCAAATTCCATTTGTTTTGCTACACACCTCTTCATTCTCTGTTCCTCAAGAAACATTGTTGATCGTTCAGAGTTCGAGAGCATTTAATTTCAGAAAACCCCTTTTCCCCAGTTTTGATTTACTAGTTAGAGGCTTTTGCGATCTGAATTCGGATTCGGATTCCAAAATTGAATGTGAGAAGAGTGAGGATGATGATCTTGAGCGTAGTTCAAGGGCGGATTCAACCCAAGTTGATCGTGTATGCAAGGTGATCGATGAATTGTTTGCGTTAGATAGGAACATGGAGGCTATTTTTGATGAATGTGGTTTCAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCAGCATTTAGATTCTTCTGTTGGGCTGCTTAG
Protein sequence
MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
Homology
BLAST of Lag0005369 vs. NCBI nr
Match:
KAA0048071.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ96465.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 237.7 bits (605), Expect = 6.6e-59
Identity = 119/148 (80.41%), Postives = 128/148 (86.49%), Query Frame = 0
Query: 1 MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
MFDSRSH FH+SH QIPF+L + SSFSVPQE LLIV SR +FR PLFPS DLL RG+
Sbjct: 56 MFDSRSHRSFHSSHCQIPFILPYASSFSVPQEKLLIVPPSRTIDFRNPLFPSLDLLARGY 115
Query: 61 CDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFK 120
CDL NSDSDS+IECEKSEDDD E SR DST+VDRVCKVIDELFALDRNMEA+ DECG K
Sbjct: 116 CDLNNSDSDSEIECEKSEDDDRECDSRVDSTEVDRVCKVIDELFALDRNMEAVLDECGVK 175
Query: 121 LSHDLVLEVLARFKQARKPAFRFFCWAA 148
LSHDLVLEVLARFK+ARKPAFRFFCWAA
Sbjct: 176 LSHDLVLEVLARFKRARKPAFRFFCWAA 203
BLAST of Lag0005369 vs. NCBI nr
Match:
XP_008453445.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucumis melo])
HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 116/148 (78.38%), Postives = 127/148 (85.81%), Query Frame = 0
Query: 1 MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
MFDSRSH FH+SH QIPF+L + SSFSVPQE LL V SR +FR PLFPS DLL RG+
Sbjct: 56 MFDSRSHRSFHSSHCQIPFILPYASSFSVPQEKLLTVPPSRTIDFRNPLFPSLDLLARGY 115
Query: 61 CDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFK 120
CDL NSDSDS+IECEKSEDDD E SR DST+VDRVCKVIDELFALDRNMEA+ DECG +
Sbjct: 116 CDLNNSDSDSEIECEKSEDDDRECDSRVDSTEVDRVCKVIDELFALDRNMEAVLDECGVE 175
Query: 121 LSHDLVLEVLARFKQARKPAFRFFCWAA 148
L+HDLVLEVLARFK+ARKPAFRFFCWAA
Sbjct: 176 LTHDLVLEVLARFKRARKPAFRFFCWAA 203
BLAST of Lag0005369 vs. NCBI nr
Match:
XP_023537572.1 (pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 228.4 bits (581), Expect = 4.0e-56
Identity = 114/147 (77.55%), Postives = 122/147 (82.99%), Query Frame = 0
Query: 1 MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
MFDSRSHG FH+S QIPF+L H SSF VPQET+LI SSR NFR P FP FDLLVRGF
Sbjct: 55 MFDSRSHGSFHSSLCQIPFILPHASSFFVPQETMLIALSSRTINFRNPPFPCFDLLVRGF 114
Query: 61 CDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFKL 120
CD NS SDS+IECE SEDDD E SRA+S +VDRVCKV+DELFALDRNMEA+ DECG L
Sbjct: 115 CDRNSYSDSEIECEISEDDDRESESRANSIEVDRVCKVLDELFALDRNMEAVLDECGIIL 174
Query: 121 SHDLVLEVLARFKQARKPAFRFFCWAA 148
SHDLVL VL RFKQARKPAFRFFCWAA
Sbjct: 175 SHDLVLNVLERFKQARKPAFRFFCWAA 201
BLAST of Lag0005369 vs. NCBI nr
Match:
XP_022937612.1 (pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucurbita moschata])
HSP 1 Score: 227.3 bits (578), Expect = 8.9e-56
Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0
Query: 1 MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
MFDSRSHG FH+S QIPF+L H SSF VPQET+LI SSR NFR P FP FDLLVRGF
Sbjct: 55 MFDSRSHGSFHSSLCQIPFILPHASSFFVPQETMLIATSSRTINFRNPPFPCFDLLVRGF 114
Query: 61 CDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFKL 120
CD NS SDS+IECE SEDDD E SRA+ +VDRVCKV+DELFALDRNMEA+ DECG L
Sbjct: 115 CDRNSHSDSEIECEISEDDDRESDSRANPIEVDRVCKVLDELFALDRNMEAVLDECGVIL 174
Query: 121 SHDLVLEVLARFKQARKPAFRFFCWAA 148
SHDLVL VL RFKQARKPAFRFFCWAA
Sbjct: 175 SHDLVLNVLERFKQARKPAFRFFCWAA 201
BLAST of Lag0005369 vs. NCBI nr
Match:
XP_022965638.1 (pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucurbita maxima])
HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0
Query: 1 MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
MFDSRSHG FH+S QIPF+L H SSF VPQET+LI SSR NFR P FP FDLLVRGF
Sbjct: 55 MFDSRSHGSFHSSLCQIPFILPHASSFFVPQETMLIAMSSRTINFRNPPFPCFDLLVRGF 114
Query: 61 CDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFKL 120
CD NSDSDS+IE E EDDD E SRA+S +VDRVCKV+DELFALDRNMEA+ DECG L
Sbjct: 115 CDRNSDSDSEIEREIREDDDRESESRANSIEVDRVCKVLDELFALDRNMEAVLDECGIIL 174
Query: 121 SHDLVLEVLARFKQARKPAFRFFCWAA 148
SHDLVL VL RFKQARKPAFRFFCWAA
Sbjct: 175 SHDLVLNVLERFKQARKPAFRFFCWAA 201
BLAST of Lag0005369 vs. ExPASy Swiss-Prot
Match:
Q9LZP3 (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0
Query: 59 GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDE 118
G +++ D ++E E D++ S ST +V+RVCKVIDELFALDRNMEA+ DE
Sbjct: 95 GSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDE 154
Query: 119 CGFKLSHDLVLEVLARFKQARKPAFRFFCWAA 148
LSHDL++EVL RF+ ARKPAFRFFCWAA
Sbjct: 155 MKLDLSHDLIVEVLERFRHARKPAFRFFCWAA 186
BLAST of Lag0005369 vs. ExPASy Swiss-Prot
Match:
Q3EAF8 (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0
Query: 59 GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDE 118
G +++ D ++E E D++ S ST +V+RVCKVIDELFALDRNMEA+ DE
Sbjct: 95 GSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDE 154
Query: 119 CGFKLSHDLVLEVLARFKQARKPAFRFFCWAA 148
LSHDL++EVL RF+ ARKPAFRFFCWAA
Sbjct: 155 MKLDLSHDLIVEVLERFRHARKPAFRFFCWAA 186
BLAST of Lag0005369 vs. ExPASy Swiss-Prot
Match:
Q9LEQ7 (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14820 PE=2 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0
Query: 59 GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDE 118
G +++ D ++E E D++ S ST +V+RVCKVIDELFALDRNMEA+ DE
Sbjct: 94 GSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDE 153
Query: 119 CGFKLSHDLVLEVLARFKQARKPAFRFFCWAA 148
LSHDL++EVL RF+ ARKPAFRFFCWAA
Sbjct: 154 MKLDLSHDLIVEVLERFRHARKPAFRFFCWAA 185
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0048071.1 | 6.6e-59 | 80.41 | pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ96465... | [more] |
XP_008453445.1 | 1.6e-57 | 78.38 | PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-... | [more] |
XP_023537572.1 | 4.0e-56 | 77.55 | pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucur... | [more] |
XP_022937612.1 | 8.9e-56 | 76.87 | pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucur... | [more] |
XP_022965638.1 | 2.0e-55 | 76.87 | pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucur... | [more] |
Match Name | E-value | Identity | Description | |
Q9LZP3 | 1.6e-20 | 56.52 | Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop... | [more] |
Q3EAF8 | 1.6e-20 | 56.52 | Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop... | [more] |
Q9LEQ7 | 1.6e-20 | 56.52 | Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop... | [more] |