Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATGATCAAGAACTTCCTCCTCCAAGCCAAATTGTTCCTTTGAACTTCAGTTCAATTCAAACTATCCCTGAATCTCACTTGTGGACGGGCTCCAATGAGTTGGTACCGGCGATCGACTTAGACGAAATTTTTTCACTCCCATTGATCGACCTTCTCGATGACGATGCATCGGAGCACCTAGGGAGGGCTTGCGAGCAATGGGGAATGTTTCAGTTGATTAACCATGGTGTCCCCAAAACCCTAATAGCCGAAACGGAGGGGGAGGCTCAACGTCTTTTCGCTCTTCCAGCAAGACAGAAGATGAAGACGTTACAGTCTCCCAGCCACTTCACCGGCTACGGCATGGCCGGAATATCGAAGTATTATTCGAAATATATGTGGCATGAAGGATTCACCATCTTGGGTTCTCCGGTTGATGATGCCAAGAAGCTCTGGCCATCTGACTTCAAACGGTTTTGGTAA
mRNA sequence
ATGGCGGATGATCAAGAACTTCCTCCTCCAAGCCAAATTGTTCCTTTGAACTTCAGTTCAATTCAAACTATCCCTGAATCTCACTTGTGGACGGGCTCCAATGAGTTGGTACCGGCGATCGACTTAGACGAAATTTTTTCACTCCCATTGATCGACCTTCTCGATGACGATGCATCGGAGCACCTAGGGAGGGCTTGCGAGCAATGGGGAATGTTTCAGTTGATTAACCATGGTGTCCCCAAAACCCTAATAGCCGAAACGGAGGGGGAGGCTCAACGTCTTTTCGCTCTTCCAGCAAGACAGAAGATGAAGACGTTACAGTCTCCCAGCCACTTCACCGGCTACGGCATGGCCGGAATATCGAAGTATTATTCGAAATATATGTGGCATGAAGGATTCACCATCTTGGGTTCTCCGGTTGATGATGCCAAGAAGCTCTGGCCATCTGACTTCAAACGGTTTTGGTAA
Coding sequence (CDS)
ATGGCGGATGATCAAGAACTTCCTCCTCCAAGCCAAATTGTTCCTTTGAACTTCAGTTCAATTCAAACTATCCCTGAATCTCACTTGTGGACGGGCTCCAATGAGTTGGTACCGGCGATCGACTTAGACGAAATTTTTTCACTCCCATTGATCGACCTTCTCGATGACGATGCATCGGAGCACCTAGGGAGGGCTTGCGAGCAATGGGGAATGTTTCAGTTGATTAACCATGGTGTCCCCAAAACCCTAATAGCCGAAACGGAGGGGGAGGCTCAACGTCTTTTCGCTCTTCCAGCAAGACAGAAGATGAAGACGTTACAGTCTCCCAGCCACTTCACCGGCTACGGCATGGCCGGAATATCGAAGTATTATTCGAAATATATGTGGCATGAAGGATTCACCATCTTGGGTTCTCCGGTTGATGATGCCAAGAAGCTCTGGCCATCTGACTTCAAACGGTTTTGGTAA
Protein sequence
MADDQELPPPSQIVPLNFSSIQTIPESHLWTGSNELVPAIDLDEIFSLPLIDLLDDDASEHLGRACEQWGMFQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHFTGYGMAGISKYYSKYMWHEGFTILGSPVDDAKKLWPSDFKRFW
Homology
BLAST of Lag0005221 vs. NCBI nr
Match:
XP_038885582.1 (gibberellin 3-beta-dioxygenase 1-like [Benincasa hispida])
HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 123/155 (79.35%), Postives = 135/155 (87.10%), Query Frame = 0
Query: 1 MAD-DQELPPPSQIVPLNFSSIQTIPESHLWTGSNELVPAIDLDEIFSLPLIDLLDDDAS 60
MAD DQELPPPSQ VPL+FSSIQT+PESHLW SNEL A++LDE SLP+IDLLD+ AS
Sbjct: 1 MADHDQELPPPSQFVPLDFSSIQTVPESHLWPDSNELSLAVELDERVSLPIIDLLDNGAS 60
Query: 61 EHLGRACEQWGMFQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHFTGYGMAG 120
E LGRACE+WGMFQLINHGVPKTLI E E E +RLF LPARQKMK LQSPS TGYGMAG
Sbjct: 61 ELLGRACEEWGMFQLINHGVPKTLIDEAEEETRRLFTLPARQKMKALQSPSSITGYGMAG 120
Query: 121 ISKYYSKYMWHEGFTILGSPVDDAKKLWPSDFKRF 155
ISKY+ K MWHEGFT+LGSPVDDAKKLWP+D+KRF
Sbjct: 121 ISKYHPKLMWHEGFTVLGSPVDDAKKLWPNDYKRF 155
BLAST of Lag0005221 vs. NCBI nr
Match:
AAF80661.1 (putative gibberellin 3 beta hydroxylase [Citrullus lanatus subsp. vulgaris])
HSP 1 Score: 246.5 bits (628), Expect = 1.5e-61
Identity = 118/152 (77.63%), Postives = 131/152 (86.18%), Query Frame = 0
Query: 4 DQELPPPSQIVPLNFSSIQTIPESHLWTGSNELVPAIDLDEIFSLPLIDLLDDDASEHLG 63
DQELPPPSQ+VPL+F+SIQT+PESHLW S EL PAI LDE SLP+ID LDD ASE LG
Sbjct: 3 DQELPPPSQLVPLDFNSIQTVPESHLWPNSIELSPAIKLDERISLPIIDFLDDGASELLG 62
Query: 64 RACEQWGMFQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPS-HFTGYGMAGISK 123
RACEQWGMFQLINHGVPKTLI E E E +RLF+LPARQKMKTL++ S TGYGMAGISK
Sbjct: 63 RACEQWGMFQLINHGVPKTLIDEAEEETRRLFSLPARQKMKTLRTDSLTATGYGMAGISK 122
Query: 124 YYSKYMWHEGFTILGSPVDDAKKLWPSDFKRF 155
Y+ K MWHEGFT+ GSPVDDAKKLWP+D+KRF
Sbjct: 123 YHQKLMWHEGFTMSGSPVDDAKKLWPNDYKRF 154
BLAST of Lag0005221 vs. NCBI nr
Match:
KAA0064969.1 (gibberellin 3-beta-dioxygenase 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 237.7 bits (605), Expect = 6.9e-59
Identity = 111/155 (71.61%), Postives = 130/155 (83.87%), Query Frame = 0
Query: 4 DQELPPPSQIVPLNFSSIQT-IPESHLWTGSNELVPAIDLDEIFSLPLIDLLDDDASEHL 63
DQE+PPPSQ+VPLNF+S+QT +PESHLW EL A+ LD+ SLPLIDL++DDASE L
Sbjct: 3 DQEIPPPSQLVPLNFASVQTHVPESHLWPNIKELSAAVKLDKRVSLPLIDLVNDDASELL 62
Query: 64 GRACEQWGMFQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHF--TGYGMAGI 123
GRACE+WGMFQLINHGV +TLI E E E QRLF LPA QKMKTL+SP TGYGMAGI
Sbjct: 63 GRACEEWGMFQLINHGVSQTLIEEAEEETQRLFTLPAAQKMKTLRSPGSLTATGYGMAGI 122
Query: 124 SKYYSKYMWHEGFTILGSPVDDAKKLWPSDFKRFW 156
SKY+ K MWHEGFTI+GSP+++AKKLWP+D+KRFW
Sbjct: 123 SKYHPKLMWHEGFTIIGSPINEAKKLWPNDYKRFW 157
BLAST of Lag0005221 vs. NCBI nr
Match:
NP_001275523.1 (gibberellin 3-beta-dioxygenase 1-like [Cucumis sativus] >KAE8652189.1 hypothetical protein Csa_021993 [Cucumis sativus] >CCG14217.1 GA 3-oxidase [Cucumis sativus])
HSP 1 Score: 235.0 bits (598), Expect = 4.5e-58
Identity = 109/153 (71.24%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 4 DQELPPPSQIVPLNFSSIQTIPESHLWTGSNELVPAIDLDEIFSLPLIDLLDDDASEHLG 63
DQE+PPPSQ+VPL+F+S+QT+PESHLW + EL AI LD+ SLPLIDL+ D ASE LG
Sbjct: 3 DQEIPPPSQLVPLDFTSVQTVPESHLWPNATELSAAIKLDKRVSLPLIDLVSDGASELLG 62
Query: 64 RACEQWGMFQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHF--TGYGMAGIS 123
RACE+WGMFQLINHG+ KTLI E E E +RLF LPA QKMKTL+SP TGYGMAGIS
Sbjct: 63 RACEEWGMFQLINHGISKTLIEEAEEETRRLFTLPATQKMKTLRSPGSLTATGYGMAGIS 122
Query: 124 KYYSKYMWHEGFTILGSPVDDAKKLWPSDFKRF 155
KY+ K MWHEGFTILGSP+++AKKLWP+D+KRF
Sbjct: 123 KYHPKLMWHEGFTILGSPINEAKKLWPNDYKRF 155
BLAST of Lag0005221 vs. NCBI nr
Match:
XP_008445138.1 (PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Cucumis melo])
HSP 1 Score: 231.9 bits (590), Expect = 3.8e-57
Identity = 109/154 (70.78%), Postives = 129/154 (83.77%), Query Frame = 0
Query: 4 DQELPPPSQIVPLNFSSIQT-IPESHLWTGSNELVPAIDLDEIFSLPLIDLLDDDASEHL 63
DQE+PPPSQ+VPLNF+S+QT +PESHLW EL A+ LD+ SLPLIDL++DDASE L
Sbjct: 3 DQEIPPPSQLVPLNFASVQTHVPESHLWPNVKELSAAVKLDKRVSLPLIDLVNDDASELL 62
Query: 64 GRACEQWGMFQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHF--TGYGMAGI 123
GRACE+WGMFQLINHGV +TLI E E E +RLF LPA QKMKTL+SP TGYGMAGI
Sbjct: 63 GRACEEWGMFQLINHGVSQTLIEEAEEETRRLFTLPAAQKMKTLRSPGSLTATGYGMAGI 122
Query: 124 SKYYSKYMWHEGFTILGSPVDDAKKLWPSDFKRF 155
SKY+ K MWHEGFTI+GSP+++AKKLWP+D+KRF
Sbjct: 123 SKYHPKLMWHEGFTIIGSPINEAKKLWPNDYKRF 156
BLAST of Lag0005221 vs. ExPASy Swiss-Prot
Match:
O24648 (Gibberellin 3-beta-dioxygenase 1 OS=Pisum sativum OX=3888 GN=LE PE=1 SV=1)
HSP 1 Score: 140.6 bits (353), Expect = 1.5e-32
Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = 0
Query: 17 NFSSIQTIPESHLWTGSNELVPAIDLDEIF-----SLPLIDLLDDDASEHLGRACEQWGM 76
+F+S+Q +PES+ WT ++ ID + I ++P+IDL D +AS+ +G AC+ WG+
Sbjct: 21 DFNSLQELPESYNWTHLDDHT-LIDSNNIMKESTTTVPVIDLNDPNASKLIGLACKTWGV 80
Query: 77 FQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHFTGYGMAGISKYYSKYMWHE 136
+Q++NHG+P +L+ + + Q LF+LP+ QK K +SP +GYG+A IS ++ K MW+E
Sbjct: 81 YQVMNHGIPLSLLEDIQWLGQTLFSLPSHQKHKATRSPDGVSGYGIARISSFFPKLMWYE 140
Query: 137 GFTILGSPVDDAKKLWPSDFKRF 155
GFTI+GSP+D ++LWP D+ RF
Sbjct: 141 GFTIVGSPLDHFRELWPQDYTRF 162
BLAST of Lag0005221 vs. ExPASy Swiss-Prot
Match:
Q39103 (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=GA3OX1 PE=1 SV=2)
HSP 1 Score: 124.8 bits (312), Expect = 8.6e-28
Identity = 60/146 (41.10%), Postives = 93/146 (63.70%), Query Frame = 0
Query: 10 PSQIVPLNFSSIQTIPESHLWTGSNELV-------PAIDLDEIFSLPLIDLLDDDASEHL 69
P +P +F+S++ +P+S+ WT ++L+ PA ++PLIDL DA+ +
Sbjct: 17 PHSHIP-DFTSLRELPDSYKWTPKDDLLFSAAPSPPATG----ENIPLIDLDHPDATNQI 76
Query: 70 GRACEQWGMFQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHFTGYGMAGISK 129
G AC WG FQ+ NHGVP L+ + E LF LP ++K+K+ +S + +GYG+A I+
Sbjct: 77 GHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIAS 136
Query: 130 YYSKYMWHEGFTILGSPVDDAKKLWP 149
+++K MW EGFTI GSP++D +KLWP
Sbjct: 137 FFNKQMWSEGFTITGSPLNDFRKLWP 157
BLAST of Lag0005221 vs. ExPASy Swiss-Prot
Match:
Q9ZT84 (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=GA3OX2 PE=1 SV=2)
HSP 1 Score: 124.4 bits (311), Expect = 1.1e-27
Identity = 60/146 (41.10%), Postives = 91/146 (62.33%), Query Frame = 0
Query: 10 PSQIVPLNFSSIQTIPESHLWTGSNELV-PAIDLDEIFSLPLIDLLDDDASEHLGRACEQ 69
P I N +++P+S+ WT ++L+ A DE +LPLIDL D + +G AC
Sbjct: 13 PIHIPLSNPPDFKSLPDSYTWTPKDDLLFSASASDE--TLPLIDLSDIHVATLVGHACTT 72
Query: 70 WGMFQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHFTGYGMAGISKYYSKYM 129
WG FQ+ NHGVP L+ + E LF LP ++K+K +S + +GYG+A I+ +++K M
Sbjct: 73 WGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENGVSGYGVARIASFFNKKM 132
Query: 130 WHEGFTILGSPVDDAKKLWPSDFKRF 155
W EGFT++GSP+ D +KLWPS ++
Sbjct: 133 WSEGFTVIGSPLHDFRKLWPSHHLKY 156
BLAST of Lag0005221 vs. ExPASy Swiss-Prot
Match:
Q9SVS8 (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana OX=3702 GN=GA3OX3 PE=2 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 5.2e-25
Identity = 52/144 (36.11%), Postives = 88/144 (61.11%), Query Frame = 0
Query: 12 QIVPLNFSSIQTIPESHLWTGSNELVPAIDLDEIFSLPLIDLLDDDASEHLGRACEQWGM 71
+I+PL+F++ +T+P+SH+W+ + +P+I L + + L +ACE+WG+
Sbjct: 17 RIIPLDFTNTKTLPDSHVWSKPEPETTS------GPIPVISLSNPEEHGLLRQACEEWGV 76
Query: 72 FQLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHFTGYGMAGISKYYSKYMWHE 131
F + +HGV +L+ + + +RLF+LP +K+ ++SP TGYG+ IS +Y K MW E
Sbjct: 77 FHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGVVRISMFYDKLMWSE 136
Query: 132 GFTILGSPV-DDAKKLWPSDFKRF 155
GF+++GS + A LWP D F
Sbjct: 137 GFSVMGSSLRRHATLLWPDDHAEF 154
BLAST of Lag0005221 vs. ExPASy Swiss-Prot
Match:
Q3I409 (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum OX=4565 GN=GA3ox2-3 PE=2 SV=1)
HSP 1 Score: 108.6 bits (270), Expect = 6.4e-23
Identity = 55/148 (37.16%), Postives = 85/148 (57.43%), Query Frame = 0
Query: 17 NFSSIQTIPESHLWTGSNELVPAIDLD----EIFSLPLIDLLDDDASEHLGRACEQWGMF 76
+F + + +PE+H W G ++ P +D E ++P++D+ D A+E +G A + WG F
Sbjct: 15 DFRAARRVPETHAWPGLHD-HPVVDGSGAGGEPDAVPVVDMRDPFAAEAVGLAAQDWGAF 74
Query: 77 QLINHGVPKTLIAETEGEAQRLFALPARQKMKTLQSPSHFTGYGMAGISKYYSKYMWHEG 136
L+ HGVP L+ E +FALPA +KM+ ++ P GYG IS ++SK MW EG
Sbjct: 75 LLVGHGVPLDLLVRVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEG 134
Query: 137 FTILGSPVD---DAKKLWPS---DFKRF 155
+T SP + D +KLWP D++ F
Sbjct: 135 YTF--SPANLRSDLRKLWPKAGHDYRHF 159
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038885582.1 | 3.8e-65 | 79.35 | gibberellin 3-beta-dioxygenase 1-like [Benincasa hispida] | [more] |
AAF80661.1 | 1.5e-61 | 77.63 | putative gibberellin 3 beta hydroxylase [Citrullus lanatus subsp. vulgaris] | [more] |
KAA0064969.1 | 6.9e-59 | 71.61 | gibberellin 3-beta-dioxygenase 1-like [Cucumis melo var. makuwa] | [more] |
NP_001275523.1 | 4.5e-58 | 71.24 | gibberellin 3-beta-dioxygenase 1-like [Cucumis sativus] >KAE8652189.1 hypothetic... | [more] |
XP_008445138.1 | 3.8e-57 | 70.78 | PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
O24648 | 1.5e-32 | 44.06 | Gibberellin 3-beta-dioxygenase 1 OS=Pisum sativum OX=3888 GN=LE PE=1 SV=1 | [more] |
Q39103 | 8.6e-28 | 41.10 | Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=GA3OX1 PE=1 ... | [more] |
Q9ZT84 | 1.1e-27 | 41.10 | Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=GA3OX2 PE=1 ... | [more] |
Q9SVS8 | 5.2e-25 | 36.11 | Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana OX=3702 GN=GA3OX3 PE=2 ... | [more] |
Q3I409 | 6.4e-23 | 37.16 | Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum OX=4565 GN=GA3ox2-3 PE=2... | [more] |