Lag0004947 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0004947
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	dihydrofolate reductase-like
Location	chr6: 8834363 .. 8835834 (+)
RNA-Seq Expression	Lag0004947
Synteny	Lag0004947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGCCACGGAAGAATTCTCAGAAAACCTAGATTCCTTTGCCTCCATGGCTTCCGAACCAGTGGGAAATCCTCAAGAAGCAAGTCCGGAAATGGTCGGCTTCTGTCCTCGATCAATTCGATCTCGATTTCCTCGACGCTCCATTTCCTGTCGAAGGAAAATCCGACGTTGAAGGAATTTTCGATCCTCCCTATTTCGAGTGGTTTCAATTCAGTGCGGTACGATTGATTGACCTAATTTCAATTTCTTCTCAAATTCACAAACTCATGTTTAACTTATTTATTCTCTCCCTTCTTCCATTACAGGAATTTACAGAATACAGGAATTTCGACGAGTGTCTCCCATTCATTGAAGATTACATGCTTGAGCAAGGACCGTTTGATGGATTCCTCGGTTTCTCACAGGTAATTATCCTGAATTTCCTCTGTTCTTTTCCTAATTGGCGAAATAAAGCTTAATCGAGTATATATCAATTAAATTCGTGATCATCGTCAGCGGTGCGAAATTCAGATCGCAAACTGTGGCTGAGAAAGCTTACTCGACGTCCATTGGATGCCCATGCCCGTCCCTCCATTTTCTAGGTACCTTCAGGCTTCACACGTGTGTTTGTTTCTTTTTCGAAAGCCATGCACACTGCATTGTTTTCAAATAATCTAATTCTTTGCCATGTTATTTCTAAAAGAACCGACCACTGAATGCATGATTTTAGGCGAGGATCAAGTGTATGTTTCCAATTTTTTAAAAAATATATATTTATTTTGAATTAATGATTAAGCACTTTTGATCGGTAAAAATGTTATACATCTTATTATTAGTATTTATATAGATTGATGCTATTATATATATAGTTGAAAGTAACTGATTGATATTATTATTAATATTTTATGAGTTCTACTATGGGATATTAGATATATTTTAAATGGAAACAAGAGCAAGCTCAATTAAGAGGTCAGATGAGTAAATTACCCCCTCCAGATGTTGTAAAAAAAAAAAAGATATTTTTTAAATCTTAATTTCGTCGAACTCTCTAGTTACAACGATGTATAAATATTTTAATCTTTGAATATTTTAAGTGATTTTTTCAAATTTTAATATTAATTTACAATTTTTGCAATATTTAATATTAAGATAAAACAAAAACAAAACTCATATCTTGATTAGTTGATACTTCTGATAATTGTTATTGTATAGGGATAATGCTCTCATACATTTTTCAAAAATATAATAGACCACAATAATAGTTAACTAAACCATTTTTAGTGGTGATCTAGAATTGTTTATTTTGTGAATTAGCTTCTTTATTATTTAATTTAAGATGCCATCAATAGAATTGTTGACTAAAGTTATATGAATATAATTTAAAAATAAAATATTATTAACATTTGAAATAATTAATCAACTTCTCATACGATTGTGTTATTTAATTAATGGTGGCAGGAGAGGAAGACTTCTTGAAGCCTATGGATTGA

mRNA sequence

ATGGAAAGCCACGGAAGAATTCTCAGAAAACCTAGATTCCTTTGCCTCCATGGCTTCCGAACCAGTGGGAAATCCTCAAGAAGCAAGTCCGGAAATGGTCGGCTTCTGTCCTCGATCAATTCGATCTCGATTTCCTCGACGCTCCATTTCCTGTCGAAGGAAAATCCGACGTTGAAGGAATTTTCGATCCTCCCTATTTCGAGTGGTTTCAATTCAGTGCGGAATTTACAGAATACAGGAATTTCGACGAGTGTCTCCCATTCATTGAAGATTACATGCTTGAGCAAGGACCGTTTGATGGATTCCTCGGTTTCTCACAGCGGTGCGAAATTCAGATCGCAAACTGTGGCTGAGAAAGCTTACTCGACGTCCATTGGATGCCCATGCCCGTCCCTCCATTTTCTAGGAGAGGAAGACTTCTTGAAGCCTATGGATTGA

Coding sequence (CDS)

ATGGAAAGCCACGGAAGAATTCTCAGAAAACCTAGATTCCTTTGCCTCCATGGCTTCCGAACCAGTGGGAAATCCTCAAGAAGCAAGTCCGGAAATGGTCGGCTTCTGTCCTCGATCAATTCGATCTCGATTTCCTCGACGCTCCATTTCCTGTCGAAGGAAAATCCGACGTTGAAGGAATTTTCGATCCTCCCTATTTCGAGTGGTTTCAATTCAGTGCGGAATTTACAGAATACAGGAATTTCGACGAGTGTCTCCCATTCATTGAAGATTACATGCTTGAGCAAGGACCGTTTGATGGATTCCTCGGTTTCTCACAGCGGTGCGAAATTCAGATCGCAAACTGTGGCTGAGAAAGCTTACTCGACGTCCATTGGATGCCCATGCCCGTCCCTCCATTTTCTAGGAGAGGAAGACTTCTTGAAGCCTATGGATTGA

Protein sequence

MESHGRILRKPRFLCLHGFRTSGKSSRSKSGNGRLLSSINSISISSTLHFLSKENPTLKEFSILPISSGFNSVRNLQNTGISTSVSHSLKITCLSKDRLMDSSVSHSGAKFRSQTVAEKAYSTSIGCPCPSLHFLGEEDFLKPMD

Homology

[Close]

BLAST of Lag0004947 vs. NCBI nr
Match: KAE8652134.1 (hypothetical protein Csa_022239 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 64/179 (35.75%), Postives = 77/179 (43.02%), Query Frame = 0


Query: 1   MESHGRILRKPRFLCLHGFRTSGKSSRSKSGNGRLLSSINSISISSTLHFLSKENPTLKE 60
           M S  +   KPRFLCLHGFRTS    + + G   L     S+     LHFL    P   +
Sbjct: 1   MGSDQKFFTKPRFLCLHGFRTSAAILKKQVGKWPL-----SVLDQLDLHFLDAPFPAEGK 60

Query: 61  -----------FSILPISSGFNSVRNL------------------------QNTGISTSV 120
                      F     S  F   RN                         Q   +S ++
Sbjct: 61  SDVEGIFDPPYFEWFQFSPEFTEYRNFDECLSFIENYMIKHGPFDGFLGFSQGAILSAAL 120

Query: 121 -SHSLKITCLSKDRLMDSSVSHSGAKFRSQTVAEKAYSTSIGCPCPSLHFLGEEDFLKP 144
                K   L+K   +   +  SGAKFRS++VAEKAYST IG  CPSLHFLGEEDFL P
Sbjct: 121 PGFQAKGIALTKVPKIKFVIIVSGAKFRSESVAEKAYSTPIG--CPSLHFLGEEDFLMP 172

[Close]

BLAST of Lag0004947 vs. NCBI nr
Match: XP_023545459.1 (dihydrofolate reductase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 65/179 (36.31%), Postives = 78/179 (43.58%), Query Frame = 0


Query: 1   MESHGRILRKPRFLCLHGFRTSGKSSRSKSGNGRLLSSINSISISSTLHFLSKENPTLKE 60
           M + G I RKPRFLCLHGFRTSG   + + G        +S+     L FL    P   +
Sbjct: 28  MGTDGEIRRKPRFLCLHGFRTSGAILKKQVGKWP-----DSVLEQLDLDFLDAPFPAEGK 87

Query: 61  -----------FSILPISSGFNSVRNLQN------------------TGISTSVSHS--- 120
                      F     S  F   RN                      G S     S   
Sbjct: 88  SDIEGIFDPPYFEWFQFSPEFTEYRNFDECLSFIEDYMLKHGPFDGFLGFSQGAILSAAL 147

Query: 121 ----LKITCLSKDRLMDSSVSHSGAKFRSQTVAEKAYSTSIGCPCPSLHFLGEEDFLKP 144
                K   L+K   +   +  SGAKFRSQ+VAEKAYS++IG  CPSLHFLG+EDFL P
Sbjct: 148 PGLQAKGIALTKVPKIKFVIIVSGAKFRSQSVAEKAYSSAIG--CPSLHFLGKEDFLMP 199

[Close]

BLAST of Lag0004947 vs. NCBI nr
Match: XP_022997250.1 (dihydrofolate reductase-like [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 65/179 (36.31%), Postives = 78/179 (43.58%), Query Frame = 0


Query: 1   MESHGRILRKPRFLCLHGFRTSGKSSRSKSGNGRLLSSINSISISSTLHFLSKENPTLKE 60
           M + G I RKPRFLCLHGFRTSG   + + G        +S+     L FL    P   +
Sbjct: 28  MGTDGEIRRKPRFLCLHGFRTSGAILKKQVGKWP-----DSVLEQLDLDFLDAPFPAEGK 87

Query: 61  -----------FSILPISSGFNSVRNLQN------------------TGISTSVSHS--- 120
                      F     S  F   RN                      G S     S   
Sbjct: 88  SDIEGIFDPPYFEWFQFSPEFTEYRNFDECLSFIEDYMLKHGPFDGFLGFSQGAILSAAL 147

Query: 121 ----LKITCLSKDRLMDSSVSHSGAKFRSQTVAEKAYSTSIGCPCPSLHFLGEEDFLKP 144
                K   L+K   +   +  SGAKFRSQ+VAEKAYS++IG  CPSLHFLG+EDFL P
Sbjct: 148 PGLQAKGMALTKVPKIKFVIIVSGAKFRSQSVAEKAYSSAIG--CPSLHFLGKEDFLMP 199

[Close]

BLAST of Lag0004947 vs. NCBI nr
Match: XP_004152614.1 (dihydrofolate reductase [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 64/179 (35.75%), Postives = 77/179 (43.02%), Query Frame = 0


Query: 1   MESHGRILRKPRFLCLHGFRTSGKSSRSKSGNGRLLSSINSISISSTLHFLSKENPTLKE 60
           M S  +   KPRFLCLHGFRTS    + + G   L     S+     LHFL    P   +
Sbjct: 28  MGSDQKFFTKPRFLCLHGFRTSAAILKKQVGKWPL-----SVLDQLDLHFLDAPFPAEGK 87

Query: 61  -----------FSILPISSGFNSVRNL------------------------QNTGISTSV 120
                      F     S  F   RN                         Q   +S ++
Sbjct: 88  SDVEGIFDPPYFEWFQFSPEFTEYRNFDECLSFIENYMIKHGPFDGFLGFSQGAILSAAL 147

Query: 121 -SHSLKITCLSKDRLMDSSVSHSGAKFRSQTVAEKAYSTSIGCPCPSLHFLGEEDFLKP 144
                K   L+K   +   +  SGAKFRS++VAEKAYST IG  CPSLHFLGEEDFL P
Sbjct: 148 PGFQAKGIALTKVPKIKFVIIVSGAKFRSESVAEKAYSTPIG--CPSLHFLGEEDFLMP 199

[Close]

BLAST of Lag0004947 vs. NCBI nr
Match: XP_038885360.1 (dihydrofolate reductase-like [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-09
Identity = 63/179 (35.20%), Postives = 78/179 (43.58%), Query Frame = 0


Query: 1   MESHGRILRKPRFLCLHGFRTSGKSSRSKSGNGRLLSSINSISISSTLHFLSKENPTLKE 60
           M +  +I RKPRFLCLHGFRTS    + + G         S+     LHFL    P   +
Sbjct: 17  MGTDAKIHRKPRFLCLHGFRTSAAILKKQVGKWPA-----SVLDQFDLHFLDAPFPAEGK 76

Query: 61  -----------FSILPISSGFNSVRNL------------------------QNTGISTSV 120
                      F     S  F   RN                         Q   +S ++
Sbjct: 77  SDVEGIFDPPYFEWFQFSQEFTEYRNFDECLSFIEDYMLKHGPFDGFLGFSQGAILSAAL 136

Query: 121 -SHSLKITCLSKDRLMDSSVSHSGAKFRSQTVAEKAYSTSIGCPCPSLHFLGEEDFLKP 144
                K   L+K   +   +  SGAKFRS++VA+KAYST IG  CPSLHFLGEEDFL P
Sbjct: 137 PGFQAKGIALTKVPKIKFVIIVSGAKFRSESVAQKAYSTPIG--CPSLHFLGEEDFLMP 188

The following BLAST results are available for this feature:

BLAST of Lag0004947 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652134.1	1.6e-09	35.75	hypothetical protein Csa_022239 [Cucumis sativus]	[more]
XP_023545459.1	1.6e-09	36.31	dihydrofolate reductase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997250.1	1.6e-09	36.31	dihydrofolate reductase-like [Cucurbita maxima]	[more]
XP_004152614.1	1.6e-09	35.75	dihydrofolate reductase [Cucumis sativus]	[more]
XP_038885360.1	2.1e-09	35.20	dihydrofolate reductase-like [Benincasa hispida]	[more]

BLAST of Lag0004947 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48070:SF5	DIHYDROFOLATE REDUCTASE	coord: 7..27 coord: 104..143
None	No IPR available	PANTHER	PTHR48070	ESTERASE OVCA2	coord: 104..143
None	No IPR available	PANTHER	PTHR48070	ESTERASE OVCA2	coord: 7..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0004947.1	Lag0004947.1	mRNA