Lag0001365 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001365
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Sister chromatid cohesion protein
Location	chr4: 30265134 .. 30265742 (-)
RNA-Seq Expression	Lag0001365
Synteny	Lag0001365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTGCCGCCCTCCACTTCCGGCTCCGCCTCCGCCTCCGGCCCCGCCCACCGCGGTATCGGTTTGTCCAATACTATTCACTCCGAGGTTGCTCCCTGCTTGCCTTTGCCTTCGCTTCCGGTCTTCTTCGGCTCCTTCGAGCCCGAGCTCCGGCTCTTCGATGAGCCGGCTGGGGACCATGCTACTTTGAGGACTGATGTTCTCTCTCAGTCTAAGAAGATCGCTGATCTGCTTCGTGCTACTGACGTCTCTTACTTGTGAGTTCTTGATTTTTTCTTTTTTTTTTTTTGAACTGAATTCTTGTAATTCGAATTTTGTGATTCTTCAGTCCGGCGCCGGAGACGGAGGAGGGAGGTCCCTCCTCCCTCCCTTTTCTATTTTTTTTTTTAAAAAAATATTGAAGAAAAAAAGTGAAGAAGAAAGAAGGGAAGAAGGAGAAAGAAGGGAAGAAGAAGCAAGGAGAAAGAAGAAAAAAAAAAAAAAAAAAAAAATTCAGTCGCCGGCGGCGGCGGCGGCGGCGTGTGGTGGCCGCCGGTCGCCGGACTTAGGAAGAAGAAGAAGGAGGGAGAAGATGGAGAAGAAGGAAGATGTAGAATAAGGAGATGA

mRNA sequence

ATGACTTTGCCGCCCTCCACTTCCGGCTCCGCCTCCGCCTCCGGCCCCGCCCACCGCGGTATCGGTTTGTCCAATACTATTCACTCCGAGGTTGCTCCCTGCTTGCCTTTGCCTTCGCTTCCGGTCTTCTTCGGCTCCTTCGAGCCCGAGCTCCGGCTCTTCGATGAGCCGGCTGGGGACCATGCTACTTTGAGGACTGATGTTCTCTCTCAGTCTAAGAAGATCGCTGATCTGCTTCGTGCTACTGACGTCTCTTACTTTCCGGCGCCGGAGACGGAGGAGGGAGTCGCCGGCGGCGGCGGCGGCGGCGTGTGGTGGCCGCCGGTCGCCGGACTTAGGAAGAAGAAGAAGGAGGGAGAAGATGGAGAAGAAGGAAGATGTAGAATAAGGAGATGA

Coding sequence (CDS)

ATGACTTTGCCGCCCTCCACTTCCGGCTCCGCCTCCGCCTCCGGCCCCGCCCACCGCGGTATCGGTTTGTCCAATACTATTCACTCCGAGGTTGCTCCCTGCTTGCCTTTGCCTTCGCTTCCGGTCTTCTTCGGCTCCTTCGAGCCCGAGCTCCGGCTCTTCGATGAGCCGGCTGGGGACCATGCTACTTTGAGGACTGATGTTCTCTCTCAGTCTAAGAAGATCGCTGATCTGCTTCGTGCTACTGACGTCTCTTACTTTCCGGCGCCGGAGACGGAGGAGGGAGTCGCCGGCGGCGGCGGCGGCGGCGTGTGGTGGCCGCCGGTCGCCGGACTTAGGAAGAAGAAGAAGGAGGGAGAAGATGGAGAAGAAGGAAGATGTAGAATAAGGAGATGA

Protein sequence

MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSYFPAPETEEGVAGGGGGGVWWPPVAGLRKKKKEGEDGEEGRCRIRR

Homology

[Close]

BLAST of Lag0001365 vs. NCBI nr
Match: XP_038880409.1 (sister chromatid cohesion protein SCC2 isoform X1 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-28
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGD 60
          M LPPS S SASASG  +RGIGLSNTIHSEVAPCLPLPSLPVFFG+ EP+LRLFDEP G 
Sbjct: 1  MNLPPSASASASASG--NRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPDGS 60

Query: 61 HATLRTDVLSQSKKIADLLRATDVSY 87
          +AT  TD+L+QSKKIADLLRATDVSY
Sbjct: 61 YATSTTDLLAQSKKIADLLRATDVSY 84

[Close]

BLAST of Lag0001365 vs. NCBI nr
Match: XP_022998260.1 (sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGD 60
          M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG 
Sbjct: 1  MSLPPFASASASGSG--LRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGS 60

Query: 61 HATLRTDVLSQSKKIADLLRATDVSY 87
          +ATLR+DVL+QSKKIADLLRATDVSY
Sbjct: 61 YATLRSDVLAQSKKIADLLRATDVSY 84

[Close]

BLAST of Lag0001365 vs. NCBI nr
Match: XP_022948643.1 (sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGD 60
          M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG 
Sbjct: 1  MSLPPFASASASGSG--LRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGS 60

Query: 61 HATLRTDVLSQSKKIADLLRATDVSY 87
          +ATLR+DVL+QSKKIADLLRATDVSY
Sbjct: 61 YATLRSDVLAQSKKIADLLRATDVSY 84

[Close]

BLAST of Lag0001365 vs. NCBI nr
Match: KAG6607103.1 (Sister chromatid cohesion protein SCC2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGD 60
          M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG 
Sbjct: 1  MSLPPFASASASGSG--LRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGS 60

Query: 61 HATLRTDVLSQSKKIADLLRATDVSY 87
          +ATLR+DVL+QSKKIADLLRATDVSY
Sbjct: 61 YATLRSDVLAQSKKIADLLRATDVSY 84

[Close]

BLAST of Lag0001365 vs. NCBI nr
Match: XP_022998261.1 (sister chromatid cohesion protein SCC2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGD 60
          M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG 
Sbjct: 1  MSLPPFASASASGSG--LRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGS 60

Query: 61 HATLRTDVLSQSKKIADLLRATDVSY 87
          +ATLR+DVL+QSKKIADLLRATDVSY
Sbjct: 61 YATLRSDVLAQSKKIADLLRATDVSY 84

[Close]

BLAST of Lag0001365 vs. ExPASy Swiss-Prot
Match: A5HEI1 (Sister chromatid cohesion protein SCC2 OS=Arabidopsis thaliana OX=3702 GN=SCC2 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-16
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 5  PSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEP-ELRLFDE---PAGD 64
          PS+SG  S+SG  H GIGL+NT+ SEV P LPLPSLP+F G+ EP E +LFDE    +G 
Sbjct: 4  PSSSGLGSSSGLTHFGIGLANTVQSEVTPYLPLPSLPIFCGAAEPGEFKLFDEVGQGSGY 63

Query: 65 HATLRTDVLSQSKKIADLLRATDVSY 87
           +  R+++L+QS +IA++L  TDVSY
Sbjct: 64 RSLDRSEILAQSSRIANMLHETDVSY 89

The following BLAST results are available for this feature:

BLAST of Lag0001365 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880409.1	1.4e-28	81.40	sister chromatid cohesion protein SCC2 isoform X1 [Benincasa hispida]	[more]
XP_022998260.1	1.8e-28	82.56	sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita maxima]	[more]
XP_022948643.1	1.8e-28	82.56	sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita moschata]	[more]
KAG6607103.1	1.8e-28	82.56	Sister chromatid cohesion protein SCC2, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022998261.1	1.8e-28	82.56	sister chromatid cohesion protein SCC2 isoform X2 [Cucurbita maxima]	[more]

BLAST of Lag0001365 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5HEI1	1.3e-16	54.65	Sister chromatid cohesion protein SCC2 OS=Arabidopsis thaliana OX=3702 GN=SCC2 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001365.1	Lag0001365.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061780	mitotic cohesin loading
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity