Lag0000381 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000381
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr4: 5476776 .. 5477774 (-)
RNA-Seq Expression	Lag0000381
Synteny	Lag0000381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGATGAGGCATAATTTGGCTGAAATCTTGAGCATTTTGAAGAAACCCGATCAAACTCTGAACAACTTGGAAGATCAACCACCTCGAGATCCCAAGAAAGGGAAGGAAGCGATGATGGAGGAAGTAAGAGATTCAGAAAGTGTCACGAGCAGAATGTCGAACCCAAATCTGGAAAACGACTTGACTCTCAAAGACCCTGACCCAAGCGACAAAAGAACTCGCAGAAGCTTGTCTTCAAAACCGACACCAGACACGTATGTTAGGGTCAGTTTCAGGGAAAAAAATAGGGGTCGGAGTGGGATCAAAGGCCGAACAAGGTGGAGGGGATCGGGGCAGGAGTTTTTGAAGTGGCGGAAAGAGGAAGATAACCACTACGACTACCTGAGGAAGACATATAATGAGGATCTAGAAGACTTGATAGGGTACATATATCTGCCCTTCACATATGACATTATCGAAGCAAAGGTACCCCAAAAGTTCAAAATACCGACCTTTCAGCAGTACAATGGGAAGAAGGACACGATTTAACATCTAGACACATACAAAACCTAGATGGATTTCCATGGGGCCTCTGAGGCAACGAAGTGTCGGGCCTTCGCCCTCACCCTAACAGGGATGGCCAGGCAATGGTTTAGCAAGCTGCCTTGGAGGTCCATCGAATCGTTCAAAGAGTTCGTGTGGGCCTTTGTCACGCAATTTCTAGGAGTCAGGGATCGACACAAGCCACAAATAAACCTACTAACCATCAAACAGAGACGAAGAGAAAGTTTGTGAGACTATATAGCGAGGTTCAACAACGAGGTTCTGTAGGTGGAAGGATATGATGATGGAGTTGCACTAACTCTTGTTATTTCAGGTTTGCAGGACGAAAAACTACTGAACTCAATTGGTGAGAGTCAACTGCGCACCTATGTAGAATTCATGACTAGGGCGCAAAGATACATAAGTGCTAAAGAGTTGCTAAAGTTGAAGCAGACGAAAAGGGAAGCCTAG

mRNA sequence

ATGAACAAGATGAGGCATAATTTGGCTGAAATCTTGAGCATTTTGAAGAAACCCGATCAAACTCTGAACAACTTGGAAGATCAACCACCTCGAGATCCCAAGAAAGGGAAGGAAGCGATGATGGAGGAAGTAAGAGATTCAGAAAGTGTCACGAGCAGAATGTCGAACCCAAATCTGGAAAACGACTTGACTCTCAAAGACCCTGACCCAAGCGACAAAAGAACTCGCAGAAGCTTGTCTTCAAAACCGACACCAGACACGTATGTTAGGGTCAGTTTCAGGGAAAAAAATAGGGGTCGGAGTGGGATCAAAGGCCGAACAAGGTGGAGGGGATCGGGGCAGGAGTTTTTGAAGTGGCGGAAAGAGGAAGATAACCACTACGACTACCTGAGGAAGACATATAATGAGGATCTAGAAGACTTGATAGGGTACATATATCTGCCCTTCACATATGACATTATCGAAGCAAAGATGGATTTCCATGGGGCCTCTGAGGCAACGAAGTGTCGGGCCTTCGCCCTCACCCTAACAGGGATGGCCAGGCAATGGTTTAGCAAGCTGCCTTGGAGGTCCATCGAATCGTTCAAAGAGTTCGTGTGGGCCTTTGTCACGCAATTTCTAGGAGTCAGGGATCGACACAAGCCACAAATAAACCTACTAACCATCAAACAGAGACGAAGAGAAAGTTTGCAGGACGAAAAACTACTGAACTCAATTGGTGAGAGTCAACTGCGCACCTATGTAGAATTCATGACTAGGGCGCAAAGATACATAAGTGCTAAAGAGTTGCTAAAGTTGAAGCAGACGAAAAGGGAAGCCTAG

Coding sequence (CDS)

ATGAACAAGATGAGGCATAATTTGGCTGAAATCTTGAGCATTTTGAAGAAACCCGATCAAACTCTGAACAACTTGGAAGATCAACCACCTCGAGATCCCAAGAAAGGGAAGGAAGCGATGATGGAGGAAGTAAGAGATTCAGAAAGTGTCACGAGCAGAATGTCGAACCCAAATCTGGAAAACGACTTGACTCTCAAAGACCCTGACCCAAGCGACAAAAGAACTCGCAGAAGCTTGTCTTCAAAACCGACACCAGACACGTATGTTAGGGTCAGTTTCAGGGAAAAAAATAGGGGTCGGAGTGGGATCAAAGGCCGAACAAGGTGGAGGGGATCGGGGCAGGAGTTTTTGAAGTGGCGGAAAGAGGAAGATAACCACTACGACTACCTGAGGAAGACATATAATGAGGATCTAGAAGACTTGATAGGGTACATATATCTGCCCTTCACATATGACATTATCGAAGCAAAGATGGATTTCCATGGGGCCTCTGAGGCAACGAAGTGTCGGGCCTTCGCCCTCACCCTAACAGGGATGGCCAGGCAATGGTTTAGCAAGCTGCCTTGGAGGTCCATCGAATCGTTCAAAGAGTTCGTGTGGGCCTTTGTCACGCAATTTCTAGGAGTCAGGGATCGACACAAGCCACAAATAAACCTACTAACCATCAAACAGAGACGAAGAGAAAGTTTGCAGGACGAAAAACTACTGAACTCAATTGGTGAGAGTCAACTGCGCACCTATGTAGAATTCATGACTAGGGCGCAAAGATACATAAGTGCTAAAGAGTTGCTAAAGTTGAAGCAGACGAAAAGGGAAGCCTAG

Protein sequence

MNKMRHNLAEILSILKKPDQTLNNLEDQPPRDPKKGKEAMMEEVRDSESVTSRMSNPNLENDLTLKDPDPSDKRTRRSLSSKPTPDTYVRVSFREKNRGRSGIKGRTRWRGSGQEFLKWRKEEDNHYDYLRKTYNEDLEDLIGYIYLPFTYDIIEAKMDFHGASEATKCRAFALTLTGMARQWFSKLPWRSIESFKEFVWAFVTQFLGVRDRHKPQINLLTIKQRRRESLQDEKLLNSIGESQLRTYVEFMTRAQRYISAKELLKLKQTKREA

Homology

[Close]

BLAST of Lag0000381 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 4.1e-14
Identity = 56/140 (40.00%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 159 DFHGASEATKCRAFALTLTGMARQWFSKLPWRSIESFKEFVWAFVTQFLGVRDRHKPQIN 218
           D +   EA +CR F+ TLTG AR WF +L   SI SFKE   AFVTQF+G R + KP   
Sbjct: 35  DIYDIREAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTY 94

Query: 219 LLTIKQRRRESL------------------------------QDEKLLNSIGESQLRTYV 269
           LLTIKQ+  ESL                              +DE+L+ S G+    T++
Sbjct: 95  LLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFM 154

[Close]

BLAST of Lag0000381 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-14
Identity = 58/141 (41.13%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 158 MDFHGASEATKCRAFALTLTGMARQWFSKLPWRSIESFKEFVWAFVTQFLGVRDRHKPQI 217
           MD +G SEA KCR F+ TL+G AR WF +L   SI SFK    AFVTQF+G R R +P  
Sbjct: 38  MDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVA 97

Query: 218 NLLTIKQRRRESL------------------------------QDEKLLNSIGESQLRTY 269
            LLTIKQR  ESL                              +DE L  S G+    T+
Sbjct: 98  YLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTF 157

[Close]

BLAST of Lag0000381 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 7.8e-13
Identity = 55/147 (37.41%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 152 DIIEAKMDFHGASEATKCRAFALTLTGMARQWFSKLPWRSIESFKEFVWAFVTQFLGVRD 211
           D+     D +G +EA +CR F+ TLTG  R WF +L  +SI SFKE   AFVTQF G  +
Sbjct: 28  DVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWN 87

Query: 212 RHKPQINLLTIKQRRRESL------------------------------QDEKLLNSIGE 269
           R +P   LLTIKQ+  ESL                              +DE+L+ S G+
Sbjct: 88  RSRPVAYLLTIKQKATESLKDYVARFNKEKLQVEGLTDAVVLLVFISGVKDEQLVFSFGK 147

[Close]

BLAST of Lag0000381 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-12
Identity = 67/207 (32.37%), Postives = 90/207 (43.48%), Query Frame = 0


Query: 121 KEEDNHYDYLRKTYNEDLEDLIGYIYLPFTYDIIEAK----------------------- 180
           + E +   + +K    DLE+L+G    PFT +I+  K                       
Sbjct: 57  RPESSEKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHL 116

Query: 181 ------MDFHGASEATKCRAFALTLTGMARQWFSKLPWRSIESFKEFVWAFVTQFLGVRD 240
                 MD +G S+A +CR F+ TL G AR WF +L   SI SFK    AF+TQF+G R 
Sbjct: 117 DAYREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRC 176

Query: 241 RHKPQINLLTIKQRRRESL------------------------------QDEKLLNSIGE 269
           R +P   LLTIKQR  ESL                              +DE L  S  +
Sbjct: 177 RSRPVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEK 236

[Close]

BLAST of Lag0000381 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-12
Identity = 91/299 (30.43%), Postives = 121/299 (40.47%), Query Frame = 0


Query: 31  RDPKKGKEAMMEEVRDS-ESVTSRMS-NPNLENDLTLKDPDPSDKRTRRSLSSKPTPDTY 90
           RDPKKGK     +  +S  SV S++    N      + DP  + K+ +      P P   
Sbjct: 76  RDPKKGKGPTESDTEESTNSVGSKLRIGGNTRQRTRIFDPRKTKKQHK-----SPAP--- 135

Query: 91  VRVSFREKNRGRSGIKGRTRWRGSGQEFLKWRKEEDNHYDYLRKTYNEDLEDLIGYIYLP 150
                   N G+S    R     S  +     + E +   +  K    DLE+L+     P
Sbjct: 136 --------NGGKSDHDDRNSEPISLDKGKPADRPESSEKRHSHKEKGFDLEELLDQADSP 195

Query: 151 FTYDIIEAK-----------------------------MDFHGASEATKCRAFALTLTGM 210
           FT +I+  K                             MD +G SEA +CR F+ TL G 
Sbjct: 196 FTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGS 255

Query: 211 ARQWFSKLPWRSIESFKEFVWAFVTQFLGVRDRHKPQINLLTIKQRRRESL--------- 269
           AR WF +L   SI SFK    AFVTQF+G R R +P   LLTIKQR  ESL         
Sbjct: 256 ARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNE 315

[Close]

BLAST of Lag0000381 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-14
Identity = 56/140 (40.00%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 159 DFHGASEATKCRAFALTLTGMARQWFSKLPWRSIESFKEFVWAFVTQFLGVRDRHKPQIN 218
           D +   EA +CR F+ TLTG AR WF +L   SI SFKE   AFVTQF+G R + KP   
Sbjct: 35  DIYDIREAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTY 94

Query: 219 LLTIKQRRRESL------------------------------QDEKLLNSIGESQLRTYV 269
           LLTIKQ+  ESL                              +DE+L+ S G+    T++
Sbjct: 95  LLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFM 154

[Close]

BLAST of Lag0000381 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-14
Identity = 58/141 (41.13%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 158 MDFHGASEATKCRAFALTLTGMARQWFSKLPWRSIESFKEFVWAFVTQFLGVRDRHKPQI 217
           MD +G SEA KCR F+ TL+G AR WF +L   SI SFK    AFVTQF+G R R +P  
Sbjct: 38  MDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVA 97

Query: 218 NLLTIKQRRRESL------------------------------QDEKLLNSIGESQLRTY 269
            LLTIKQR  ESL                              +DE L  S G+    T+
Sbjct: 98  YLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTF 157

[Close]

BLAST of Lag0000381 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-13
Identity = 55/147 (37.41%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 152 DIIEAKMDFHGASEATKCRAFALTLTGMARQWFSKLPWRSIESFKEFVWAFVTQFLGVRD 211
           D+     D +G +EA +CR F+ TLTG  R WF +L  +SI SFKE   AFVTQF G  +
Sbjct: 28  DVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWN 87

Query: 212 RHKPQINLLTIKQRRRESL------------------------------QDEKLLNSIGE 269
           R +P   LLTIKQ+  ESL                              +DE+L+ S G+
Sbjct: 88  RSRPVAYLLTIKQKATESLKDYVARFNKEKLQVEGLTDAVVLLVFISGVKDEQLVFSFGK 147

[Close]

BLAST of Lag0000381 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.4e-13
Identity = 67/207 (32.37%), Postives = 90/207 (43.48%), Query Frame = 0


Query: 121 KEEDNHYDYLRKTYNEDLEDLIGYIYLPFTYDIIEAK----------------------- 180
           + E +   + +K    DLE+L+G    PFT +I+  K                       
Sbjct: 57  RPESSEKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHL 116

Query: 181 ------MDFHGASEATKCRAFALTLTGMARQWFSKLPWRSIESFKEFVWAFVTQFLGVRD 240
                 MD +G S+A +CR F+ TL G AR WF +L   SI SFK    AF+TQF+G R 
Sbjct: 117 DAYREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRC 176

Query: 241 RHKPQINLLTIKQRRRESL------------------------------QDEKLLNSIGE 269
           R +P   LLTIKQR  ESL                              +DE L  S  +
Sbjct: 177 RSRPVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEK 236

[Close]

BLAST of Lag0000381 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 91/299 (30.43%), Postives = 121/299 (40.47%), Query Frame = 0


Query: 31  RDPKKGKEAMMEEVRDS-ESVTSRMS-NPNLENDLTLKDPDPSDKRTRRSLSSKPTPDTY 90
           RDPKKGK     +  +S  SV S++    N      + DP  + K+ +      P P   
Sbjct: 76  RDPKKGKGPTESDTEESTNSVGSKLRIGGNTRQRTRIFDPRKTKKQHK-----SPAP--- 135

Query: 91  VRVSFREKNRGRSGIKGRTRWRGSGQEFLKWRKEEDNHYDYLRKTYNEDLEDLIGYIYLP 150
                   N G+S    R     S  +     + E +   +  K    DLE+L+     P
Sbjct: 136 --------NGGKSDHDDRNSEPISLDKGKPADRPESSEKRHSHKEKGFDLEELLDQADSP 195

Query: 151 FTYDIIEAK-----------------------------MDFHGASEATKCRAFALTLTGM 210
           FT +I+  K                             MD +G SEA +CR F+ TL G 
Sbjct: 196 FTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGS 255

Query: 211 ARQWFSKLPWRSIESFKEFVWAFVTQFLGVRDRHKPQINLLTIKQRRRESL--------- 269
           AR WF +L   SI SFK    AFVTQF+G R R +P   LLTIKQR  ESL         
Sbjct: 256 ARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNE 315

The following BLAST results are available for this feature:

BLAST of Lag0000381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158344.1	4.1e-14	40.00	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_022150035.1	5.4e-14	41.13	uncharacterized protein LOC111018307 [Momordica charantia]	[more]
XP_022147761.1	7.8e-13	37.41	uncharacterized protein LOC111016619 [Momordica charantia]	[more]
XP_022159109.1	1.7e-12	32.37	uncharacterized protein LOC111025548 [Momordica charantia]	[more]
XP_022158830.1	2.3e-12	30.43	uncharacterized protein LOC111025293 [Momordica charantia]	[more]

BLAST of Lag0000381 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0000381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZ49	2.0e-14	40.00	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D7D2	2.6e-14	41.13	uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1D3B7	3.8e-13	37.41	uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1E1E7	8.4e-13	32.37	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DWY0	1.1e-12	30.43	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Lag0000381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 171..231 e-value: 8.3E-6 score: 26.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000381.1	Lag0000381.1	mRNA