Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAATTGCTCGCAAAGTGCAATATAACCCATAAAGAGGCCACCACCTACCATCCAAAAATAAATGGTCAGGCAGAAGTGTCCAACAGAGAAATTAAGAAGATATTGGATCAAGTGGTAAATTCATCTAGTAAGGAATGGGCAGATCACCTGGATTATGCAATATGGGCATGTCGCACCGCGTACAAGACGCCTCTTGGAATGTCTCGTTATGCATTAGTCTTTGGGAAAGCATGCCACTTACCACTAGAGTTGGAACACAAGGCACTGTGA
mRNA sequence
ATGGCCAAATTGCTCGCAAAGTGCAATATAACCCATAAAGAGGCCACCACCTACCATCCAAAAATAAATGGTCAGGCAGAAGTGTCCAACAGAGAAATTAAGAAGATATTGGATCAAGTGGTAAATTCATCTAGTAAGGAATGGGCAGATCACCTGGATTATGCAATATGGGCATGTCGCACCGCGTACAAGACGCCTCTTGGAATGTCTCGTTATGCATTAGTCTTTGGGAAAGCATGCCACTTACCACTAGAGTTGGAACACAAGGCACTGTGA
Coding sequence (CDS)
ATGGCCAAATTGCTCGCAAAGTGCAATATAACCCATAAAGAGGCCACCACCTACCATCCAAAAATAAATGGTCAGGCAGAAGTGTCCAACAGAGAAATTAAGAAGATATTGGATCAAGTGGTAAATTCATCTAGTAAGGAATGGGCAGATCACCTGGATTATGCAATATGGGCATGTCGCACCGCGTACAAGACGCCTCTTGGAATGTCTCGTTATGCATTAGTCTTTGGGAAAGCATGCCACTTACCACTAGAGTTGGAACACAAGGCACTGTGA
Protein sequence
MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTAYKTPLGMSRYALVFGKACHLPLELEHKAL
Homology
BLAST of IVF0026967 vs. ExPASy TrEMBL
Match:
A0A5A7T814 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002370 PE=4 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0
Query: 1 MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACR 60
MAKL K NITHK ATTYH + NGQ EVSN +IKKIL++VVNSS K+W DHLD +W R
Sbjct: 1 MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60
Query: 61 TAYKTPLGMSRYALVFGKACHLPLELEHKAL 92
TAYKTPLG+S YALVFGK CHLPL+LEHK L
Sbjct: 61 TAYKTPLGISPYALVFGKPCHLPLKLEHKTL 91
BLAST of IVF0026967 vs. ExPASy TrEMBL
Match:
A0A5D3BD35 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0
Query: 1 MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACR 60
MAKL K NITHK ATTYH + NGQ EVSN +IKKIL++VVNSS K+W DHLD +W R
Sbjct: 1 MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60
Query: 61 TAYKTPLGMSRYALVFGKACHLPLELEHKAL 92
TAYKTPLG+S YALVFGK CHLPL+LEHK L
Sbjct: 61 TAYKTPLGISPYALVFGKPCHLPLKLEHKTL 91
BLAST of IVF0026967 vs. ExPASy TrEMBL
Match:
A0A5D3BX67 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00350 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 2.8e-29
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0
Query: 3 KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
KLLAK NITHK ATTYHP+ NGQA+VSNREI KIL+ VVNSS K+W DHLD+A++A +A
Sbjct: 156 KLLAKYNITHKIATTYHPQTNGQAKVSNREINKILEIVVNSSRKDWMDHLDFALYAYYSA 215
Query: 63 YKTPLGMSRYALVFGKACHLPLELEHKAL 92
YKTP+ MS YAL+FGKA HLPLELEHKAL
Sbjct: 216 YKTPIEMSPYALLFGKAYHLPLELEHKAL 244
BLAST of IVF0026967 vs. ExPASy TrEMBL
Match:
A0A5A7VH40 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold979G00860 PE=4 SV=1)
HSP 1 Score: 136.0 bits (341), Expect = 8.1e-29
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0
Query: 3 KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
KLLAK NITHK ATTYHP+ NGQA+VSNREI KIL+ VVNSS K+W DHLD+ ++A +A
Sbjct: 156 KLLAKYNITHKIATTYHPQTNGQAKVSNREINKILEIVVNSSRKDWMDHLDFVLYAYYSA 215
Query: 63 YKTPLGMSRYALVFGKACHLPLELEHKAL 92
YKTP+ MS YAL+FGKA HLPLELEHKAL
Sbjct: 216 YKTPIEMSPYALLFGKAYHLPLELEHKAL 244
BLAST of IVF0026967 vs. ExPASy TrEMBL
Match:
A0A151QL68 (Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_049186 PE=4 SV=1)
HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 0
Query: 4 LLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTAY 63
LLAK + HK +T YHP+ NGQAEVSNRE+KKIL++VV S K+W+ L+ A+WA RTAY
Sbjct: 1319 LLAKHGVRHKVSTPYHPQTNGQAEVSNREVKKILERVVQPSRKDWSSRLEEALWAYRTAY 1378
Query: 64 KTPLGMSRYALVFGKACHLPLELEHKA 91
KTP+GMS Y LVFGKACHLP+ELEHKA
Sbjct: 1379 KTPIGMSPYRLVFGKACHLPVELEHKA 1405
BLAST of IVF0026967 vs. NCBI nr
Match:
KAA0038356.1 (pol [Cucumis melo var. makuwa])
HSP 1 Score: 140 bits (354), Expect = 6.61e-39
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0
Query: 1 MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACR 60
MAKL K NITHK ATTYH + NGQ EVSN +IKKIL++VVNSS K+W DHLD +W R
Sbjct: 1 MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60
Query: 61 TAYKTPLGMSRYALVFGKACHLPLELEHKAL 91
TAYKTPLG+S YALVFGK CHLPL+LEHK L
Sbjct: 61 TAYKTPLGISPYALVFGKPCHLPLKLEHKTL 91
BLAST of IVF0026967 vs. NCBI nr
Match:
TYJ97037.1 (pol [Cucumis melo var. makuwa])
HSP 1 Score: 140 bits (354), Expect = 1.33e-37
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0
Query: 1 MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACR 60
MAKL K NITHK ATTYH + NGQ EVSN +IKKIL++VVNSS K+W DHLD +W R
Sbjct: 1 MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60
Query: 61 TAYKTPLGMSRYALVFGKACHLPLELEHKAL 91
TAYKTPLG+S YALVFGK CHLPL+LEHK L
Sbjct: 61 TAYKTPLGISPYALVFGKPCHLPLKLEHKTL 91
BLAST of IVF0026967 vs. NCBI nr
Match:
TYK04097.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 137 bits (346), Expect = 2.70e-37
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0
Query: 3 KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
KLLAK NITHK ATTYHP+ NGQA+VSNREI KIL+ VVNSS K+W DHLD+A++A +A
Sbjct: 156 KLLAKYNITHKIATTYHPQTNGQAKVSNREINKILEIVVNSSRKDWMDHLDFALYAYYSA 215
Query: 63 YKTPLGMSRYALVFGKACHLPLELEHKAL 91
YKTP+ MS YAL+FGKA HLPLELEHKAL
Sbjct: 216 YKTPIEMSPYALLFGKAYHLPLELEHKAL 244
BLAST of IVF0026967 vs. NCBI nr
Match:
KAA0066654.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 136 bits (342), Expect = 1.06e-36
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0
Query: 3 KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
KLLAK NITHK ATTYHP+ NGQA+VSNREI KIL+ VVNSS K+W DHLD+ ++A +A
Sbjct: 156 KLLAKYNITHKIATTYHPQTNGQAKVSNREINKILEIVVNSSRKDWMDHLDFVLYAYYSA 215
Query: 63 YKTPLGMSRYALVFGKACHLPLELEHKAL 91
YKTP+ MS YAL+FGKA HLPLELEHKAL
Sbjct: 216 YKTPIEMSPYALLFGKAYHLPLELEHKAL 244
BLAST of IVF0026967 vs. NCBI nr
Match:
XP_038877833.1 (uncharacterized protein LOC120070047 [Benincasa hispida])
HSP 1 Score: 130 bits (328), Expect = 1.64e-36
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 0
Query: 3 KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
KLL K N+ HK AT YHP+ NGQAEVSNREIK IL++VVN S K+WA L+ A+ A +TA
Sbjct: 42 KLLLKYNVCHKIATAYHPQTNGQAEVSNREIKLILEKVVNPSRKDWAMKLNDALCAYKTA 101
Query: 63 YKTPLGMSRYALVFGKACHLPLELEHKAL 91
YKTP+GMS YALVFGKACHLPLELEHK L
Sbjct: 102 YKTPIGMSLYALVFGKACHLPLELEHKVL 130
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T814 | 2.5e-30 | 72.53 | Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002370 PE=4 SV=1 | [more] |
A0A5D3BD35 | 2.5e-30 | 72.53 | Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1 | [more] |
A0A5D3BX67 | 2.8e-29 | 75.28 | Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7VH40 | 8.1e-29 | 74.16 | Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A151QL68 | 2.0e-27 | 68.97 | Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_049186 PE=4... | [more] |
Match Name | E-value | Identity | Description | |