IVF0026967 (gene) Melon (IVF77) v1

Overview


Name	IVF0026967
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol polyprotein
Location	chr10: 13582760 .. 13583035 (+)
RNA-Seq Expression	IVF0026967
Synteny	IVF0026967

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGCTCGCAAAGTGCAATATAACCCATAAAGAGGCCACCACCTACCATCCAAAAATAAATGGTCAGGCAGAAGTGTCCAACAGAGAAATTAAGAAGATATTGGATCAAGTGGTAAATTCATCTAGTAAGGAATGGGCAGATCACCTGGATTATGCAATATGGGCATGTCGCACCGCGTACAAGACGCCTCTTGGAATGTCTCGTTATGCATTAGTCTTTGGGAAAGCATGCCACTTACCACTAGAGTTGGAACACAAGGCACTGTGA

mRNA sequence

ATGGCCAAATTGCTCGCAAAGTGCAATATAACCCATAAAGAGGCCACCACCTACCATCCAAAAATAAATGGTCAGGCAGAAGTGTCCAACAGAGAAATTAAGAAGATATTGGATCAAGTGGTAAATTCATCTAGTAAGGAATGGGCAGATCACCTGGATTATGCAATATGGGCATGTCGCACCGCGTACAAGACGCCTCTTGGAATGTCTCGTTATGCATTAGTCTTTGGGAAAGCATGCCACTTACCACTAGAGTTGGAACACAAGGCACTGTGA

Coding sequence (CDS)

ATGGCCAAATTGCTCGCAAAGTGCAATATAACCCATAAAGAGGCCACCACCTACCATCCAAAAATAAATGGTCAGGCAGAAGTGTCCAACAGAGAAATTAAGAAGATATTGGATCAAGTGGTAAATTCATCTAGTAAGGAATGGGCAGATCACCTGGATTATGCAATATGGGCATGTCGCACCGCGTACAAGACGCCTCTTGGAATGTCTCGTTATGCATTAGTCTTTGGGAAAGCATGCCACTTACCACTAGAGTTGGAACACAAGGCACTGTGA

Protein sequence

MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTAYKTPLGMSRYALVFGKACHLPLELEHKAL

Homology

[Close]

BLAST of IVF0026967 vs. ExPASy TrEMBL
Match: A0A5A7T814 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002370 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACR 60
          MAKL  K NITHK ATTYH + NGQ EVSN +IKKIL++VVNSS K+W DHLD  +W  R
Sbjct: 1  MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60

Query: 61 TAYKTPLGMSRYALVFGKACHLPLELEHKAL 92
          TAYKTPLG+S YALVFGK CHLPL+LEHK L
Sbjct: 61 TAYKTPLGISPYALVFGKPCHLPLKLEHKTL 91

[Close]

BLAST of IVF0026967 vs. ExPASy TrEMBL
Match: A0A5D3BD35 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACR 60
          MAKL  K NITHK ATTYH + NGQ EVSN +IKKIL++VVNSS K+W DHLD  +W  R
Sbjct: 1  MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60

Query: 61 TAYKTPLGMSRYALVFGKACHLPLELEHKAL 92
          TAYKTPLG+S YALVFGK CHLPL+LEHK L
Sbjct: 61 TAYKTPLGISPYALVFGKPCHLPLKLEHKTL 91

[Close]

BLAST of IVF0026967 vs. ExPASy TrEMBL
Match: A0A5D3BX67 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00350 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.8e-29
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 3   KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
           KLLAK NITHK ATTYHP+ NGQA+VSNREI KIL+ VVNSS K+W DHLD+A++A  +A
Sbjct: 156 KLLAKYNITHKIATTYHPQTNGQAKVSNREINKILEIVVNSSRKDWMDHLDFALYAYYSA 215

Query: 63  YKTPLGMSRYALVFGKACHLPLELEHKAL 92
           YKTP+ MS YAL+FGKA HLPLELEHKAL
Sbjct: 216 YKTPIEMSPYALLFGKAYHLPLELEHKAL 244

[Close]

BLAST of IVF0026967 vs. ExPASy TrEMBL
Match: A0A5A7VH40 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold979G00860 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.1e-29
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 3   KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
           KLLAK NITHK ATTYHP+ NGQA+VSNREI KIL+ VVNSS K+W DHLD+ ++A  +A
Sbjct: 156 KLLAKYNITHKIATTYHPQTNGQAKVSNREINKILEIVVNSSRKDWMDHLDFVLYAYYSA 215

Query: 63  YKTPLGMSRYALVFGKACHLPLELEHKAL 92
           YKTP+ MS YAL+FGKA HLPLELEHKAL
Sbjct: 216 YKTPIEMSPYALLFGKAYHLPLELEHKAL 244

[Close]

BLAST of IVF0026967 vs. ExPASy TrEMBL
Match: A0A151QL68 (Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_049186 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 4    LLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTAY 63
            LLAK  + HK +T YHP+ NGQAEVSNRE+KKIL++VV  S K+W+  L+ A+WA RTAY
Sbjct: 1319 LLAKHGVRHKVSTPYHPQTNGQAEVSNREVKKILERVVQPSRKDWSSRLEEALWAYRTAY 1378

Query: 64   KTPLGMSRYALVFGKACHLPLELEHKA 91
            KTP+GMS Y LVFGKACHLP+ELEHKA
Sbjct: 1379 KTPIGMSPYRLVFGKACHLPVELEHKA 1405

[Close]

BLAST of IVF0026967 vs. NCBI nr
Match: KAA0038356.1 (pol [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (354), Expect = 6.61e-39
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACR 60
          MAKL  K NITHK ATTYH + NGQ EVSN +IKKIL++VVNSS K+W DHLD  +W  R
Sbjct: 1  MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60

Query: 61 TAYKTPLGMSRYALVFGKACHLPLELEHKAL 91
          TAYKTPLG+S YALVFGK CHLPL+LEHK L
Sbjct: 61 TAYKTPLGISPYALVFGKPCHLPLKLEHKTL 91

[Close]

BLAST of IVF0026967 vs. NCBI nr
Match: TYJ97037.1 (pol [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (354), Expect = 1.33e-37
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MAKLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACR 60
          MAKL  K NITHK ATTYH + NGQ EVSN +IKKIL++VVNSS K+W DHLD  +W  R
Sbjct: 1  MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60

Query: 61 TAYKTPLGMSRYALVFGKACHLPLELEHKAL 91
          TAYKTPLG+S YALVFGK CHLPL+LEHK L
Sbjct: 61 TAYKTPLGISPYALVFGKPCHLPLKLEHKTL 91

[Close]

BLAST of IVF0026967 vs. NCBI nr
Match: TYK04097.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 2.70e-37
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 3   KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
           KLLAK NITHK ATTYHP+ NGQA+VSNREI KIL+ VVNSS K+W DHLD+A++A  +A
Sbjct: 156 KLLAKYNITHKIATTYHPQTNGQAKVSNREINKILEIVVNSSRKDWMDHLDFALYAYYSA 215

Query: 63  YKTPLGMSRYALVFGKACHLPLELEHKAL 91
           YKTP+ MS YAL+FGKA HLPLELEHKAL
Sbjct: 216 YKTPIEMSPYALLFGKAYHLPLELEHKAL 244

[Close]

BLAST of IVF0026967 vs. NCBI nr
Match: KAA0066654.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 1.06e-36
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 3   KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
           KLLAK NITHK ATTYHP+ NGQA+VSNREI KIL+ VVNSS K+W DHLD+ ++A  +A
Sbjct: 156 KLLAKYNITHKIATTYHPQTNGQAKVSNREINKILEIVVNSSRKDWMDHLDFVLYAYYSA 215

Query: 63  YKTPLGMSRYALVFGKACHLPLELEHKAL 91
           YKTP+ MS YAL+FGKA HLPLELEHKAL
Sbjct: 216 YKTPIEMSPYALLFGKAYHLPLELEHKAL 244

[Close]

BLAST of IVF0026967 vs. NCBI nr
Match: XP_038877833.1 (uncharacterized protein LOC120070047 [Benincasa hispida])

HSP 1 Score: 130 bits (328), Expect = 1.64e-36
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 3   KLLAKCNITHKEATTYHPKINGQAEVSNREIKKILDQVVNSSSKEWADHLDYAIWACRTA 62
           KLL K N+ HK AT YHP+ NGQAEVSNREIK IL++VVN S K+WA  L+ A+ A +TA
Sbjct: 42  KLLLKYNVCHKIATAYHPQTNGQAEVSNREIKLILEKVVNPSRKDWAMKLNDALCAYKTA 101

Query: 63  YKTPLGMSRYALVFGKACHLPLELEHKAL 91
           YKTP+GMS YALVFGKACHLPLELEHK L
Sbjct: 102 YKTPIGMSLYALVFGKACHLPLELEHKVL 130

The following BLAST results are available for this feature:

BLAST of IVF0026967 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026967 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T814	2.5e-30	72.53	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002370 PE=4 SV=1	[more]
A0A5D3BD35	2.5e-30	72.53	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1	[more]
A0A5D3BX67	2.8e-29	75.28	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VH40	8.1e-29	74.16	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A151QL68	2.0e-27	68.97	Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_049186 PE=4...	[more]

BLAST of IVF0026967 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038356.1	6.61e-39	72.53	pol [Cucumis melo var. makuwa]	[more]
TYJ97037.1	1.33e-37	72.53	pol [Cucumis melo var. makuwa]	[more]
TYK04097.1	2.70e-37	75.28	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066654.1	1.06e-36	74.16	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_038877833.1	1.64e-36	71.91	uncharacterized protein LOC120070047 [Benincasa hispida]	[more]

BLAST of IVF0026967 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..90 e-value: 3.4E-21 score: 77.4
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 2..87
None	No IPR available	PANTHER	PTHR46148:SF31	PROTEIN NYNRIN-LIKE	coord: 2..87
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026967.1	IVF0026967.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding