IVF0026941 (gene) Melon (IVF77) v1

Overview


Name	IVF0026941
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1
Location	chr07: 11858732 .. 11858947 (+)
RNA-Seq Expression	IVF0026941
Synteny	IVF0026941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGTACTTGCTGTCGAACTGCAAACAATGTTATGCCGGTCGATTCCATCCAATCCAACACTCAGACTATTGGCCTGAGTTATCATTCACCGGAGTTCGCCCGAATGCGGACTTACTTAAAGGACCCAGTTGACCAAGAACTACCAGAATCCATAATGAAATGGATTGGAAAGAGTATGATCAATCACTCAGATGCACTCTCTGGAAAGTAG

mRNA sequence

ATGAATGGTACTTGCTGTCGAACTGCAAACAATGTTATGCCGGTCGATTCCATCCAATCCAACACTCAGACTATTGGCCTGAGTTATCATTCACCGGAGTTCGCCCGAATGCGGACTTACTTAAAGGACCCAGTTGACCAAGAACTACCAGAATCCATAATGAAATGGATTGGAAAGAGTATGATCAATCACTCAGATGCACTCTCTGGAAAGTAG

Coding sequence (CDS)

ATGAATGGTACTTGCTGTCGAACTGCAAACAATGTTATGCCGGTCGATTCCATCCAATCCAACACTCAGACTATTGGCCTGAGTTATCATTCACCGGAGTTCGCCCGAATGCGGACTTACTTAAAGGACCCAGTTGACCAAGAACTACCAGAATCCATAATGAAATGGATTGGAAAGAGTATGATCAATCACTCAGATGCACTCTCTGGAAAGTAG

Protein sequence

MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK

Homology

[Close]

BLAST of IVF0026941 vs. ExPASy TrEMBL
Match: A0A5D3CWN0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00530 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-25
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13 MPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK 72
          MPVDSIQSNTQTIGLSYHSP+FARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK
Sbjct: 1  MPVDSIQSNTQTIGLSYHSPKFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK 59

[Close]

BLAST of IVF0026941 vs. ExPASy TrEMBL
Match: A0A5A7TI34 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00540 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCCRT+NNVMPVDSIQSNTQ IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 342 MNATCCRTSNNVMPVDSIQSNTQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 401

Query: 61  MINHSDALSGK 72
           ++NHSDALS K
Sbjct: 402 LVNHSDALSVK 412

[Close]

BLAST of IVF0026941 vs. ExPASy TrEMBL
Match: A0A5A7SNK7 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00830 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCCRT+NNVMPVDSIQSNTQ IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 105 MNATCCRTSNNVMPVDSIQSNTQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 164

Query: 61  MINHSDALSGK 72
           ++NHSDALS K
Sbjct: 165 LVNHSDALSVK 175

[Close]

BLAST of IVF0026941 vs. ExPASy TrEMBL
Match: A0A5A7U7U0 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004770 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.1e-24
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
          MN TCCRT+NNVMPVDSIQSN Q IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 17 MNATCCRTSNNVMPVDSIQSNIQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 76

Query: 61 MINHSDALSGK 72
          ++NHSDALS K
Sbjct: 77 LVNHSDALSVK 87

[Close]

BLAST of IVF0026941 vs. ExPASy TrEMBL
Match: A0A5A7T0Q1 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002710 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCC+T N+VM VD IQSNTQTIGLSYHS +FA+MRTYLKD +DQELP SIMKWIGKS
Sbjct: 52  MNATCCQTLNDVMSVDYIQSNTQTIGLSYHSLKFAQMRTYLKDLIDQELPGSIMKWIGKS 111

Query: 61  MINHSDALS 70
           ++NHSDALS
Sbjct: 112 LVNHSDALS 120

[Close]

BLAST of IVF0026941 vs. NCBI nr
Match: TYK15875.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 2.96e-32
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13 MPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK 71
          MPVDSIQSNTQTIGLSYHSP+FARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK
Sbjct: 1  MPVDSIQSNTQTIGLSYHSPKFARMRTYLKDPVDQELPESIMKWIGKSMINHSDALSGK 59

[Close]

BLAST of IVF0026941 vs. NCBI nr
Match: KAA0031833.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 2.03e-29
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCCRT+NNVMPVDSIQSNTQ IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 105 MNATCCRTSNNVMPVDSIQSNTQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 164

Query: 61  MINHSDALSGK 71
           ++NHSDALS K
Sbjct: 165 LVNHSDALSVK 175

[Close]

BLAST of IVF0026941 vs. NCBI nr
Match: KAA0042980.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 2.35e-29
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCCRT+NNVMPVDSIQSNTQ IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 342 MNATCCRTSNNVMPVDSIQSNTQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 401

Query: 61  MINHSDALSGK 71
           ++NHSDALS K
Sbjct: 402 LVNHSDALSVK 412

[Close]

BLAST of IVF0026941 vs. NCBI nr
Match: KAA0035171.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (288), Expect = 8.24e-29
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
           MN TCC+T N+VM VD IQSNTQTIGLSYHS +FA+MRTYLKD +DQELP SIMKWIGKS
Sbjct: 52  MNATCCQTLNDVMSVDYIQSNTQTIGLSYHSLKFAQMRTYLKDLIDQELPGSIMKWIGKS 111

Query: 61  MINHSDALS 69
           ++NHSDALS
Sbjct: 112 LVNHSDALS 120

[Close]

BLAST of IVF0026941 vs. NCBI nr
Match: KAA0051993.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 9.27e-29
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MNGTCCRTANNVMPVDSIQSNTQTIGLSYHSPEFARMRTYLKDPVDQELPESIMKWIGKS 60
          MN TCCRT+NNVMPVDSIQSN Q IGLS HSP+FA+M+TYLKDPVD+E   SIMKWIGKS
Sbjct: 17 MNATCCRTSNNVMPVDSIQSNIQIIGLSCHSPKFAQMQTYLKDPVDREQQGSIMKWIGKS 76

Query: 61 MINHSDALSGK 71
          ++NHSDALS K
Sbjct: 77 LVNHSDALSVK 87

The following BLAST results are available for this feature:

BLAST of IVF0026941 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWN0	5.5e-25	98.31	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7TI34	1.2e-24	80.28	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]
A0A5A7SNK7	1.2e-24	80.28	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]
A0A5A7U7U0	6.1e-24	78.87	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]
A0A5A7T0Q1	2.3e-23	79.71	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of IVF0026941 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15875.1	2.96e-32	98.31	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0031833.1	2.03e-29	80.28	serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi...	[more]
KAA0042980.1	2.35e-29	80.28	serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi...	[more]
KAA0035171.1	8.24e-29	79.71	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0051993.1	9.27e-29	78.87	serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi...	[more]

BLAST of IVF0026941 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026941.1	IVF0026941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance