IVF0026725 (gene) Melon (IVF77) v1

Overview


Name	IVF0026725
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr01: 10895370 .. 10895528 (-)
RNA-Seq Expression	IVF0026725
Synteny	IVF0026725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAGAGTCGAGGGTACTGAAAAGGAACTCCTGAGTCTGAAAGAGATGCTGCTGGAAATGAAGAAGGCTGTAGATCGATTGGCTGACGAAATGAAGGAAAATCATAGTTACAAAAAAAAGAAGAATCAGGTACCACATCAGACGGATCAGTGA

mRNA sequence

ATGGAAGAAAGAGTCGAGGGTACTGAAAAGGAACTCCTGAGTCTGAAAGAGATGCTGCTGGAAATGAAGAAGGCTGTAGATCGATTGGCTGACGAAATGAAGGAAAATCATAGTTACAAAAAAAAGAAGAATCAGGTACCACATCAGACGGATCAGTGA

Coding sequence (CDS)

ATGGAAGAAAGAGTCGAGGGTACTGAAAAGGAACTCCTGAGTCTGAAAGAGATGCTGCTGGAAATGAAGAAGGCTGTAGATCGATTGGCTGACGAAATGAAGGAAAATCATAGTTACAAAAAAAAGAAGAATCAGGTACCACATCAGACGGATCAGTGA

Protein sequence

MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKKKNQVPHQTDQ

Homology

[Close]

BLAST of IVF0026725 vs. ExPASy TrEMBL
Match: A0A5D3C2Z9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00250 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.7e-11
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKKK 44
          MEERVEGTEKELLSLKEMLLEMKKAV+RLADEMKENHSYKKK+
Sbjct: 6  MEERVEGTEKELLSLKEMLLEMKKAVERLADEMKENHSYKKKE 48

[Close]

BLAST of IVF0026725 vs. ExPASy TrEMBL
Match: A0A5A7TB62 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00940 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.7e-11
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKKK 44
          MEERVEGTEKELLSLKEMLLEMKKAV+RLADEMKENHSYKKK+
Sbjct: 6  MEERVEGTEKELLSLKEMLLEMKKAVERLADEMKENHSYKKKE 48

[Close]

BLAST of IVF0026725 vs. ExPASy TrEMBL
Match: A0A5A7T8C0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00570 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKKK 44
          MEERVEGTEKELLS+KEMLLEMKKAVDRL DEMKENHSYKKK+
Sbjct: 6  MEERVEGTEKELLSMKEMLLEMKKAVDRLTDEMKENHSYKKKE 48

[Close]

BLAST of IVF0026725 vs. ExPASy TrEMBL
Match: A0A5D3BWN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00600 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKKK 44
          MEERVEGTEKELLS+KEMLLEMKKAV+RLADEMKENHSYKKK+
Sbjct: 6  MEERVEGTEKELLSMKEMLLEMKKAVERLADEMKENHSYKKKE 48

[Close]

BLAST of IVF0026725 vs. ExPASy TrEMBL
Match: A0A5A7UYM1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002110 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKKK 44
          MEERVEGTEKELLS+KEMLLEMKKAV+RLADEMKENHSYKKK+
Sbjct: 6  MEERVEGTEKELLSMKEMLLEMKKAVERLADEMKENHSYKKKE 48

[Close]

BLAST of IVF0026725 vs. NCBI nr
Match: TYK05582.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.54e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKK 42
          MEERVEGTEKELLSLKEMLLEMKKAV+RLADEMKENHSYKKK
Sbjct: 6  MEERVEGTEKELLSLKEMLLEMKKAVERLADEMKENHSYKKK 47

[Close]

BLAST of IVF0026725 vs. NCBI nr
Match: KAA0040540.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.54e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKK 42
          MEERVEGTEKELLSLKEMLLEMKKAV+RLADEMKENHSYKKK
Sbjct: 6  MEERVEGTEKELLSLKEMLLEMKKAVERLADEMKENHSYKKK 47

[Close]

BLAST of IVF0026725 vs. NCBI nr
Match: TYK14623.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK29307.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.15e-14
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKK 42
          MEERVEGTEKELLSLK+MLLEMKKAV+RLADEMKENHSYKKK
Sbjct: 6  MEERVEGTEKELLSLKDMLLEMKKAVERLADEMKENHSYKKK 47

[Close]

BLAST of IVF0026725 vs. NCBI nr
Match: TYK04121.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.70e-14
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKK 42
          MEERVEGTEKELLS+KEMLLEMKKAV+RLADEMKENHSYKKK
Sbjct: 6  MEERVEGTEKELLSMKEMLLEMKKAVERLADEMKENHSYKKK 47

[Close]

BLAST of IVF0026725 vs. NCBI nr
Match: KAA0061073.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.70e-14
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  MEERVEGTEKELLSLKEMLLEMKKAVDRLADEMKENHSYKKK 42
          MEERVEGTEKELLS+KEMLLEMKKAV+RLADEMKENHSYKKK
Sbjct: 6  MEERVEGTEKELLSMKEMLLEMKKAVERLADEMKENHSYKKK 47

The following BLAST results are available for this feature:

BLAST of IVF0026725 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026725 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2Z9	5.7e-11	95.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TB62	5.7e-11	95.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T8C0	9.7e-11	93.02	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BWN1	9.7e-11	93.02	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7UYM1	9.7e-11	93.02	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of IVF0026725 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05582.1	1.54e-15	97.62	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0040540.1	1.54e-15	97.62	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14623.1	1.15e-14	95.24	retrotransposon protein [Cucumis melo var. makuwa] >TYK29307.1 retrotransposon p...	[more]
TYK04121.1	3.70e-14	95.24	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0061073.1	3.70e-14	95.24	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026725 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026725.1	IVF0026725.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding