Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCAACCACCTCTCTCTATACACACGCTTGGAAACTTTTTGATTATTTGCCTATATAAACACACACTCACACACACTTCAACAATACACAAGCAATCCATCTCTTTCTCCTCTCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAAAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCACAAAACACACCTCCTCCTCCCCCGTCTCCACTCCATCTGCTGCCATGCACAAGAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAATCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACCTCTTTCTATGGCCTTTGAATCATATCGTTTTCTTATTATTATTAGTAGGCTAAGTTATAACAAATAGTCTTCAATTTTCTTCTTTGTTTCAAAATTATCCTCCATACTTTCAAAAGCTGCAATATTATCCTTAAACTATCCTAAACAATTACAAAACTATTCTTGAGAGTATAATATTTTATTTTAGAAATTTCCGATAGAGAATTGAATGTTTAGAAAACTACATGTGATAATGACTTAAAACGATGTAGTGACTCAAATTTTTGTTCTTTATTCATTATGTCACTTGCTACCCAATTTCGTATCTTAGTTTCTATCCAAATTCTTAAAGATTTCTATTTCAAGAGTATTTTTTGAATGTTTATGAAAATTTAAGGATAATATTGTAATTTTTGAAAGTATGATGATGTATTTTAAACAAATGAAAAAGTTTGAGGGTATTTTTTATAATTTAAACTTATTATTATTCTAAAATAATTAGGTTCTCTTATGCTTGAATATATTAATTTTAATTAGTATTCTATGTAGGCTCTCTCTCTCTCTATATATATATTTTATATGTCTTTAATTTTAAGCTCCCCCCTCTTTCTTAGCCTTAGGGGAAATTATGTAGTTAAGTTTCTAATCATTGAGAGCCTACAATGGCCTAAATGTCCTTTGGCGGAAAATAAAAGGAATCGAAATATGTTATATTTATGCAATTATTTATTATTATTATTCCTTATGTAAATA
mRNA sequence
CTCCAACCACCTCTCTCTATACACACGCTTGGAAACTTTTTGATTATTTGCCTATATAAACACACACTCACACACACTTCAACAATACACAAGCAATCCATCTCTTTCTCCTCTCTCTCTCTTCATATTAGGAAGCAAAGTATCCCACGCAAAAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCACAAAACACACCTCCTCCTCCCCCGTCTCCACTCCATCTGCTGCCATGCACAAGAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAATCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACCTCTTTCTATGGCCTTTGAATCATATCGTTTTCTTATTATTATTAGTAGGCTAAGTTATAACAAATAGTCTTCAATTTTCTTCTTTGTTTCAAAATTATCCTCCATACTTTCAAAAGCTGCAATATTATCCTTAAACTATCCTAAACAATTACAAAACTATTCTTGAGAGTATAATATTTTATTTTAGAAATTTCCGATAGAGAATTGAATGTTTAGAAAACTACATGTGATAATGACTTAAAACGATGTAGTGACTCAAATTTTTGTTCTTTATTCATTATGTCACTTGCTACCCAATTTCGTATCTTAGTTTCTATCCAAATTCTTAAAGATTTCTATTTCAAGAGTATTTTTTGAATGTTTATGAAAATTTAAGGATAATATTGTAATTTTTGAAAGTATGATGATGTATTTTAAACAAATGAAAAAGTTTGAGGGTATTTTTTATAATTTAAACTTATTATTATTCTAAAATAATTAGGTTCTCTTATGCTTGAATATATTAATTTTAATTAGTATTCTATGTAGGCTCTCTCTCTCTCTATATATATATTTTATATGTCTTTAATTTTAAGCTCCCCCCTCTTTCTTAGCCTTAGGGGAAATTATGTAGTTAAGTTTCTAATCATTGAGAGCCTACAATGGCCTAAATGTCCTTTGGCGGAAAATAAAAGGAATCGAAATATGTTATATTTATGCAATTATTTATTATTATTATTCCTTATGTAAATA
Coding sequence (CDS)
ATGAGGTCTATTCACTCATTCCGATCAAGAAGACAGGCTACCACCATTTCCAAACTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCACAAAACACACCTCCTCCTCCCCCGTCTCCACTCCATCTGCTGCCATGCACAAGAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAATCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA
Protein sequence
MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVSTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Homology
BLAST of IVF0026241 vs. ExPASy TrEMBL
Match:
A0A0A0LJ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 3.4e-41
Identity = 95/104 (91.35%), Postives = 96/104 (92.31%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVS------TPSAAMHKRLRN 60
MRSIHSFRSRRQATTISKLKPSRRRR+KLLHL KHTSSS VS TPSAAMHKRLRN
Sbjct: 1 MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60
Query: 61 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 99
LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 61 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104
BLAST of IVF0026241 vs. ExPASy TrEMBL
Match:
A0A1R3KLV4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 35/98 (35.71%), Postives = 63/98 (64.29%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVSTPSAAMHKRLRNLQRLVP 60
MRS S R RR+ +++ + R R++ L +L + +S S ++ ++L LQR++P
Sbjct: 1 MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNSVSESL-RTSVERKLEELQRILP 60
Query: 61 GHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 99
+E N++ LFQ TADYI L+ K+++L++L++FYG+
Sbjct: 61 DACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96
BLAST of IVF0026241 vs. NCBI nr
Match:
KAE8651649.1 (hypothetical protein Csa_021260, partial [Cucumis sativus])
HSP 1 Score: 178 bits (451), Expect = 4.72e-55
Identity = 95/104 (91.35%), Postives = 96/104 (92.31%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVS------TPSAAMHKRLRN 60
MRSIHSFRSRRQATTISKLKPSRRRR+KLLHL KHTSSS VS TPSAAMHKRLRN
Sbjct: 59 MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118
Query: 61 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 98
LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 162
BLAST of IVF0026241 vs. NCBI nr
Match:
KAG6598843.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 151 bits (382), Expect = 2.56e-45
Identity = 80/105 (76.19%), Postives = 89/105 (84.76%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPV-------STPSAAMHKRLR 60
MRSIHSFR RRQAT+ + LKP+RRRRLKL+HL K+T+SS +TPS AMHKRLR
Sbjct: 1 MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60
Query: 61 NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 98
NLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61 NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
BLAST of IVF0026241 vs. NCBI nr
Match:
OMP08066.1 (hypothetical protein COLO4_06805 [Corchorus olitorius])
HSP 1 Score: 55.5 bits (132), Expect = 1.87e-07
Identity = 35/97 (36.08%), Postives = 63/97 (64.95%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVSTPSAAMHKRLRNLQRLVP 60
MRS S R RR+ +++ + R R++ L +L + +S S ++ + ++L LQR++P
Sbjct: 1 MRSKRSPRGRRKVL-LTRGRKLRIRQINLSNLPNNNNSVSESLRTS-VERKLEELQRILP 60
Query: 61 GHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYG 97
+E N++ LFQ TADYI L+ K+++L++L++FYG
Sbjct: 61 DACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYG 95
BLAST of IVF0026241 vs. NCBI nr
Match:
KAG2692204.1 (hypothetical protein I3760_08G041500 [Carya illinoinensis] >KAG6644213.1 hypothetical protein CIPAW_08G040500 [Carya illinoinensis] >KAG6698878.1 hypothetical protein I3842_08G041400 [Carya illinoinensis] >KAG7966255.1 hypothetical protein I3843_08G041200 [Carya illinoinensis])
HSP 1 Score: 53.1 bits (126), Expect = 1.27e-06
Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = 0
Query: 23 RRRRLKLLHLTKHTSSSPVSTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIHAL 82
R RR K L L+ SS ++T +++ ++L+ LQR++PG E ++ +LF R A+YI L
Sbjct: 16 RTRRKKKLRLS-FVESSKLTTVKSSVQRKLKQLQRIIPGCL-EMDMENLFPRVANYILLL 75
Query: 83 QLKLNILKDLTSFYG 97
+ K+N+LK+L++ YG
Sbjct: 76 EEKVNVLKNLSTLYG 88
BLAST of IVF0026241 vs. NCBI nr
Match:
EOY31590.1 (Uncharacterized protein TCM_038540 [Theobroma cacao])
HSP 1 Score: 52.0 bits (123), Expect = 3.76e-06
Identity = 32/91 (35.16%), Postives = 55/91 (60.44%), Query Frame = 0
Query: 7 FRSRRQATTISKLKPSRRRRLKLLHLTKHTSSSPVSTPSAAMHKRLRNLQRLVPGHTHET 66
RS+R K+ R R+L+ L+ SS S ++ + ++L+ LQR++P E
Sbjct: 1 MRSKRTPRCRRKVLLMRGRKLRRQSLSSANDSSAESVRTS-IERKLQQLQRILPAACSEI 60
Query: 67 NLNHLFQRTADYIHALQLKLNILKDLTSFYG 97
N+ LF RTA+YI L+ K+++L++L++FYG
Sbjct: 61 NMETLFLRTAEYIFLLEAKVSLLQNLSTFYG 90
BLAST of IVF0026241 vs. TAIR 10
Match:
AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )
HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 23/71 (32.39%), Postives = 42/71 (59.15%), Query Frame = 0
Query: 22 SRRRRLKLLHLTKHTSSSPVSTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIHA 81
+RR +K + + S P A+H+R++ L+ LVP L+ LF++TADYI A
Sbjct: 22 ARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILA 81
Query: 82 LQLKLNILKDL 93
L++K+ +++ +
Sbjct: 82 LEMKVKVMQTM 92
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LJ57 | 3.4e-41 | 91.35 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1 | [more] |
A0A1R3KLV4 | 4.3e-04 | 35.71 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAE8651649.1 | 4.72e-55 | 91.35 | hypothetical protein Csa_021260, partial [Cucumis sativus] | [more] |
KAG6598843.1 | 2.56e-45 | 76.19 | Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
OMP08066.1 | 1.87e-07 | 36.08 | hypothetical protein COLO4_06805 [Corchorus olitorius] | [more] |
KAG2692204.1 | 1.27e-06 | 40.00 | hypothetical protein I3760_08G041500 [Carya illinoinensis] >KAG6644213.1 hypothe... | [more] |
EOY31590.1 | 3.76e-06 | 35.16 | Uncharacterized protein TCM_038540 [Theobroma cacao] | [more] |
Match Name | E-value | Identity | Description | |
AT2G47270.1 | 1.1e-04 | 32.39 | sequence-specific DNA binding transcription factors;transcription regulators | [more] |